Heatmap: Cluster_170 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - 1.92 - - - - - - 0.24 2.42 1.35 -0.84 1.38 - - 0.4 -0.44 -0.96 - - - - - 3.15 1.9 - - 0.08 - 0.21 -0.37 1.3 -1.6 -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - 2.14 - - - - - - 1.21 - - - 0.54 - - - - - 4.56 - - - - - - - - 2.4 - - - - - -
Zm00001d004462 (GRMZM2G120132)
- - - - 4.77 - - - - - - -0.79 - - -1.16 0.9 - - 1.26 - - - - - - - - - - - - - - - 2.0 -1.16 -
Zm00001d004582 (GRMZM2G055162)
- - - - - - - - - - - 3.72 - - - 4.58 - - - - - - - - - - - - - - - - - - - - -
- - - 1.41 -1.87 -0.18 - - - - 1.01 -1.71 - - -3.85 0.83 - -1.1 -3.02 -0.86 - 1.57 - - -0.43 - - -3.65 3.95 2.91 -2.18 - -1.63 - -4.76 -1.58 -1.93
- - - - 0.9 - - - - - - 3.05 - - - 2.97 - - - - - - - - 4.25 - - - - - - - - - - - -
- - - - 1.82 0.75 1.15 - - - -0.83 0.18 - - -4.18 0.45 - - -3.68 - -4.37 - - - -3.04 3.42 - - - - - - -5.14 - -2.16 -2.27 3.91
Zm00001d006857 (GRMZM2G058364)
-3.46 -0.02 -1.41 - 1.03 - - - - -0.39 2.83 -0.44 - - -3.75 1.92 -0.82 -1.14 -1.22 - -2.13 3.45 0.77 0.82 -1.02 - - -0.37 - - 0.45 - -5.08 0.55 - -0.25 -
1.99 -2.15 - - 4.32 - - - - - - -6.09 0.69 - -3.1 -1.99 - -2.26 -1.85 -4.77 - - - - 1.04 - - -3.41 - - - - - -1.65 -4.63 1.76 2.13
Zm00001d007681 (GRMZM2G131440)
- - - - 3.46 - - - - - - -1.11 - 3.73 0.11 2.07 - - - - 1.42 - - - - - - - - - - - - - 2.12 - -
-5.04 -4.25 0.56 - -1.38 - - -2.97 -0.38 -1.53 0.96 -1.12 -0.08 -0.96 0.25 2.72 -2.2 -0.35 -4.73 - -3.21 -0.28 - - -1.15 - -0.49 -1.66 - - -3.61 - -0.67 -3.43 3.73 1.39 0.98
- - 2.78 - 0.52 - - - - - - -0.14 - - - 2.89 3.5 - - 2.51 - - - - - - - - - - - - 0.56 - - 0.89 -
- - - - -1.0 -0.24 - - - - - - - - - 1.33 1.54 - - - - - - - - 4.59 - -0.54 - - 1.14 - -2.31 -1.91 0.65 -3.45 0.24
- - - - 2.29 -0.83 3.23 - - - 1.75 2.38 - - - 2.26 - - 1.94 1.78 - - - - -1.05 - - -2.48 - - - - - - - - -0.15
-1.22 - - 4.26 2.32 - - - - - - -2.76 - - - -2.24 2.73 -1.75 0.03 - 0.13 - - - - - - - - - - - -2.8 -1.98 - -1.22 1.15
Zm00001d010046 (GRMZM2G544990)
- - - - 2.68 - - - - - - 0.94 - - - 1.61 - - -0.5 - 1.87 - - - - - - 0.57 - - - - - 0.08 4.12 0.46 -
Zm00001d010770 (GRMZM5G891056)
- 2.96 - - 2.45 - - - - - - -4.07 - - -0.92 2.08 - 2.58 - - 1.51 - - 2.78 - - - -0.71 - - - - - 0.68 0.01 - -
- - - - - - - - - - - -8.22 - - - -0.41 - - - 0.03 - - - - - - - - 5.06 - - - 0.23 - - - -0.38
-1.82 -1.95 -1.29 - 1.07 -3.06 - -2.58 - - 0.76 1.59 - -0.26 -0.82 0.24 - -1.01 2.79 0.83 -3.91 - -0.83 - - 0.05 - -2.71 - - -2.94 - - - -0.54 -1.63 3.83
- - - - 2.29 - 0.99 - - - - -2.43 - - - 0.69 - - -0.06 0.55 - - - 2.61 - - - 0.38 - - 2.9 - 1.07 -0.01 2.23 0.28 1.01
Zm00001d016179 (GRMZM2G129543)
-0.37 - - 2.13 4.18 - - - - - - -2.26 - - - -4.26 - - - - - 1.03 - - -1.48 0.64 - - - - - - -0.7 -1.69 - 2.22 2.0
Zm00001d016348 (GRMZM2G467391)
- - 0.41 - 1.91 - - - 2.4 - - -1.75 - - - 1.38 -0.16 - - 0.15 - - - 3.36 - - 1.26 -0.88 - - - - -0.8 -1.25 1.0 1.29 1.63
Zm00001d016919 (GRMZM2G049372)
- - -0.03 4.57 2.49 -2.29 -4.42 -2.23 - - - -3.91 - -1.27 -8.68 -1.86 - - -3.78 -7.32 -0.62 - -0.11 - -4.16 -1.23 -1.73 -2.89 - - -2.04 -3.45 -2.92 -5.15 -2.81 -1.25 0.81
- - 3.47 - 3.01 - - - 1.5 0.72 - -4.25 - 2.83 -0.48 0.35 - -0.02 -0.09 -3.31 - - - -2.44 - - - - - - -2.65 - - -3.37 -0.09 -0.41 -
Zm00001d018833 (GRMZM2G301699)
- - - - 0.35 -2.45 - - - - - -1.28 - 4.73 - 1.42 - - - -5.26 - - - - -0.09 -2.57 - 0.51 - - -3.99 0.92 -2.14 - -0.25 -2.1 -2.48
Zm00001d019144 (GRMZM2G432631)
- - - - 1.05 1.56 0.87 - - - - -0.09 - - -1.73 -0.29 - -1.43 -3.02 - - - - - -2.61 0.69 - - - - - - -4.15 -3.64 -1.53 0.58 4.57
Zm00001d019213 (GRMZM2G472100)
1.22 - - - 0.48 2.52 - - - 2.15 - 0.46 - - - 1.45 - - 1.22 0.77 - - - - - - - 3.56 - - - - - - 0.07 1.12 -
Zm00001d020073 (GRMZM2G461592)
-1.35 -0.34 - 2.68 1.46 - - - - -0.21 0.52 -2.37 - - -2.88 -2.21 - 0.54 1.24 - -3.17 - - - - 2.79 2.17 -0.51 - - -0.51 - -0.66 0.25 2.04 -1.28 -0.45
Zm00001d020447 (GRMZM2G340325)
- - - - 1.52 4.12 3.03 - - - - 1.46 - - - -2.27 - - 1.46 - - - - - - - - - - - - - - - -0.19 1.01 -
Zm00001d020751 (GRMZM2G072218)
- - - 3.46 2.9 -1.33 -3.67 - - - - -3.25 - -0.99 - -2.36 - - -5.87 - - - - - -3.6 - - 2.86 - - - - 2.21 2.25 - -4.0 -1.11
- - - - -0.58 - - - - - - -5.93 - 4.86 - 0.54 - - - -6.09 - - - - - - -3.29 - - - - 1.24 0.26 -0.93 - - 0.77
-4.05 0.08 -1.25 0.38 1.1 -0.07 -1.73 -4.07 1.65 1.57 -1.81 -0.74 - -2.34 -2.14 -0.54 1.98 -2.13 -2.29 -0.67 2.02 0.51 - 1.0 -0.34 -0.13 -3.24 -1.35 - 0.64 -0.18 -1.61 -3.11 -1.4 -0.44 1.43 0.28
Zm00001d021463 (GRMZM2G105245)
- -2.79 - - 1.27 0.82 -0.91 - 1.79 2.09 - -0.07 - -2.19 -0.92 -1.37 1.84 -0.59 -0.91 -2.91 2.15 -1.32 - 1.21 0.15 -0.2 -1.51 -4.61 - 1.29 -1.83 - -3.23 - -2.06 1.98 -0.19
-1.07 -0.67 0.4 -1.69 -1.09 -3.89 -3.8 -0.33 -1.97 -1.36 - -1.77 -2.75 - -2.25 0.92 1.79 0.93 0.72 -5.55 0.89 0.05 3.24 0.75 0.37 - 0.01 -1.06 - -1.78 -0.66 - -2.67 0.1 0.96 0.15 -0.59
Zm00001d025539 (GRMZM2G097504)
-1.27 0.54 3.09 - 1.0 -4.13 - - 0.65 -1.58 - -0.57 - -0.42 -1.78 0.22 - - - -5.18 -0.4 - - -0.51 -0.33 1.95 2.31 1.46 - - 0.12 - -2.39 1.56 - 0.43 -1.34
Zm00001d026650 (GRMZM2G074754)
- - - 1.09 0.32 0.41 -4.84 0.99 - - -0.44 -2.51 - 1.19 -3.96 1.86 -0.43 -1.21 1.92 -7.55 -1.38 1.49 - -4.35 -2.13 - - -2.55 - 2.61 -0.1 - 0.09 -0.46 0.9 -1.4 1.9
- - - - 2.59 - - - - - - - - - - 1.42 - - - -1.63 - - - - 0.25 - 3.23 3.2 - - - - 1.75 - - - 2.28
- - - - 3.99 - - - - - - 0.9 - - - 1.19 - - 3.43 - - - - - - - - - - - - - - - - 2.61 -
- - - - 1.11 -0.69 - - - - 1.94 -1.16 - - - 0.01 4.07 -1.17 -1.09 -4.3 - - - 1.25 - 1.24 - - - - -1.56 - -3.99 -3.26 - 2.21 0.33
- - - - -0.04 - - - - - - -2.84 - - - 2.96 - - -1.23 -3.65 - - - - - - - -3.2 - 4.59 1.67 - -3.53 - - -2.09 -
Zm00001d032792 (GRMZM2G069357)
- - - - -0.56 - - - - - 2.43 -3.09 - 1.91 - 0.67 - -0.4 -0.95 -0.23 - 4.45 - -2.37 - - - - - - - - - -1.02 -1.19 -1.48 -
Zm00001d034552 (GRMZM2G111609)
- - -3.41 2.0 2.61 -1.63 -0.2 - - - - -0.12 - 4.23 -0.11 -3.76 -1.86 - -0.28 0.39 -4.48 - - - -2.74 - - -0.15 - - - - -1.13 -1.53 -5.61 -0.61 -
- - 2.47 - 1.67 - - - - - - -3.24 - - - -1.02 - 2.15 - - - - - 0.51 - - - - - - - - 2.14 - 0.04 - 4.03
- - - - 2.6 - - - - - - -0.33 - 2.06 - 1.41 -0.72 - 0.6 - - - 2.1 - - - - - - - -1.29 - 0.32 -3.13 - - 3.92
Zm00001d035069 (GRMZM2G104877)
- - - 2.91 4.67 -5.23 - - - - - -2.88 - - -5.71 -4.98 - - -4.5 - - - - - - - -3.93 - - - -3.75 - - - -6.43 1.57 -0.75
Zm00001d035385 (GRMZM2G040833)
-1.43 -0.92 0.45 3.51 1.45 - -1.4 - 1.32 -0.05 - -1.47 - - -0.91 -3.07 - 2.02 -3.17 -0.78 - - 2.32 -1.88 -2.96 - -1.0 -3.86 - - - - -5.91 -2.07 0.14 -0.72 1.61
- - -1.17 - 2.52 - - - - - - -0.88 - - - 0.71 - - -0.65 -5.75 -2.69 0.47 - - - 3.34 3.32 -1.7 - - -2.23 - -0.97 - - -2.5 2.37
Zm00001d037138 (GRMZM2G016574)
0.02 - - 3.1 -0.8 2.4 0.28 - - - - 1.06 - - -1.56 1.2 - - - - -1.55 - - -0.5 2.9 - - - - - 1.71 - -0.07 - 0.59 0.49 -
Zm00001d037260 (GRMZM2G425647)
-0.86 -0.12 0.77 - -0.9 0.38 -1.49 -1.09 -0.23 -1.93 -0.37 -1.02 - - -0.92 2.72 2.35 0.39 0.96 -0.17 -1.63 0.99 -1.07 -0.53 -0.86 0.23 0.22 0.51 - - -0.49 - -2.0 0.15 0.74 -0.49 -2.62
- -2.04 - - 1.21 2.56 - - -1.64 - - 0.06 - 4.0 - 2.12 - - - - - 1.67 -0.6 - 0.31 - - -3.56 - - -2.21 - -3.44 - - 0.45 -
Zm00001d038307 (GRMZM2G129344)
-0.87 0.14 - 3.41 1.55 0.33 - - - - 1.87 -2.87 - - -3.49 0.43 -0.15 - - -0.13 -1.51 - - - - - 1.73 -0.36 - - -0.23 - 1.82 - 2.18 -2.95 -
-1.02 0.31 1.77 - 1.7 - - - - - - -3.15 - 2.87 -1.03 -0.8 0.93 - -0.67 - -0.43 - - - - - - -1.79 - - - 3.9 -2.49 -1.43 -2.06 -0.26 -
- - - - 1.82 - 0.03 - - - 2.06 -0.1 - - - 0.76 - - 3.05 - -1.08 - - - - - - -1.01 - 3.68 0.18 - -1.9 - - -1.37 0.87
Zm00001d038554 (GRMZM2G140805)
- - 0.29 - 2.27 0.53 -1.86 - 1.41 3.05 -3.19 0.29 - - 1.55 -4.05 -3.51 1.68 1.95 - -2.0 - - -5.04 -1.87 - - -3.79 - - 0.87 - -5.11 -6.54 0.24 1.37 -0.82
Zm00001d038649 (GRMZM2G006207)
- 0.27 - - 3.22 - - - - - - 0.95 - - -3.82 3.28 - - 0.32 -2.95 0.98 - - - - - - 0.1 - - - - -2.91 -1.4 0.17 -1.39 3.05
Zm00001d038703 (GRMZM2G124799)
-4.55 -3.72 -1.16 -2.39 4.57 - -8.89 -3.3 -4.48 - -4.43 0.32 -5.25 -0.57 -2.3 0.63 - -3.16 -3.13 - - - - - -1.1 -1.01 -1.28 -1.42 - - - - - -6.84 -0.76 1.94 1.17
Zm00001d038943 (GRMZM2G181111)
- - 0.72 - -2.43 - 1.71 -3.8 - - - 1.16 - - -2.6 3.49 -3.35 -2.87 1.93 - 0.93 - - -1.49 -1.89 - 2.47 -6.15 - 2.05 -3.85 - - - - -2.11 0.75
- - - - - - - - - - - - - - - 1.5 - - - - - - - - - - - 4.3 - - - - - 3.85 - - -
- - 1.56 - 1.8 - - - - - - -3.09 - 3.89 - 2.18 - - - - 1.74 - - - - - - - - - 2.6 - 0.49 - - -1.82 -
-5.55 -0.64 -2.87 - -2.95 - - 1.03 -3.47 -3.46 - -4.79 0.8 0.27 -4.78 2.09 0.53 0.2 -0.68 -3.34 3.12 - - 2.31 0.91 - -0.91 -0.35 - -1.62 1.75 - -6.68 -1.44 1.05 -3.86 -2.18
- - - - 4.29 - - - - - - 2.27 - - - 1.67 - - - - - - - - - - - - - - - - 3.24 - - - -
Zm00001d040607 (GRMZM2G464662)
- - - - 4.02 - - - - - - -1.22 - - - - - - - 4.35 - - - - - - - - - - - - - - - - -
- - - - 1.6 1.81 - - - - 1.65 -0.27 - - -1.34 0.07 4.33 - -0.26 -3.02 -0.74 - - - -3.01 0.63 - -1.99 - - - - - - -5.65 0.54 -
Zm00001d042048 (GRMZM2G059711)
- - - - -0.12 - - - - 0.63 - -2.81 - 0.17 - 1.14 -0.61 - - - - - 4.82 - - - - - - - - - 0.76 - -3.9 -1.38 -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
Zm00001d044419 (GRMZM2G458159)
-6.9 -5.89 0.0 -2.67 0.32 -2.49 -0.45 -1.13 -1.52 -1.76 -2.36 -2.36 -2.73 -0.27 -2.32 1.0 -0.42 1.28 1.34 2.56 0.04 -2.4 -0.33 -1.44 -0.85 3.08 -1.68 -0.1 0.87 0.29 -1.82 - -1.19 -2.89 -1.38 -2.03 -2.14
Zm00001d044739 (GRMZM5G878542)
- - - - 4.18 - - - - - - 2.29 - - 0.83 -2.71 - - 0.92 - - - - - - - - - - - - - - - - 3.35 -
- - - - 4.38 - - - - - - - - - - -1.0 - - - - - - - - 3.83 - - - - - - - - - - 0.53 -
Zm00001d045645 (GRMZM2G434839)
- - - - 0.69 -3.4 -3.67 -1.81 - - -1.27 -0.07 - - - 2.48 -4.0 - 2.72 0.04 3.67 0.61 - - 0.58 - -2.57 -0.88 - - -3.39 - -0.71 -5.23 -0.86 -0.48 0.89
- - - - 0.75 - - - - - - -1.02 - - - 3.72 - - - - 3.59 - - 3.15 - - - - - - - - - - -0.53 - -
Zm00001d046124 (GRMZM2G155675)
- - - - 3.1 - - - - - - -2.39 - - - 3.45 - - 3.56 - - - - - - - - 2.46 - - - - - - - - -
- - - - 2.94 2.36 - - - - - -0.0 - - - 0.49 - 2.95 2.56 - 0.74 - - - - - - 2.43 - - - - - - - 0.11 -
Zm00001d046754 (GRMZM2G518751)
-10.43 - - 0.56 -0.18 -2.26 -3.09 -1.38 - - -6.67 -3.25 - 3.5 - 1.03 3.15 - 0.58 -1.36 -0.02 -3.19 -3.86 - -8.94 1.97 - -0.06 - -2.77 0.57 - -3.8 -3.22 -1.42 -0.93 -0.09
Zm00001d047311 (GRMZM2G412254)
- - - - -0.94 0.57 - - - - 1.91 -1.82 - 3.75 -7.82 0.5 3.21 - -6.88 0.91 - 1.91 - - -3.45 -4.77 - - - - - - -5.9 -2.64 - -0.2 -
Zm00001d048814 (GRMZM2G044104)
-6.38 -7.09 -0.01 -3.87 2.1 1.87 0.82 1.42 0.23 -0.07 1.46 1.26 - 0.27 0.23 -1.82 -4.05 -2.69 -0.7 - -3.92 -1.74 -0.04 -5.88 0.76 - -3.91 0.32 -0.2 -2.28 -2.27 -0.43 -1.12 -0.57 0.21 1.02 1.05
Zm00001d048819 (GRMZM2G161169)
-7.59 - -3.31 2.67 2.81 2.27 0.69 1.04 -0.15 0.42 1.56 1.34 -4.63 -6.88 0.46 -5.3 -8.07 - -6.17 - -9.24 - 0.49 - -5.08 - -4.65 -5.83 - - -7.16 - - -6.49 -1.19 1.4 0.33
Zm00001d048867 (GRMZM2G445854)
- - - 0.72 3.91 - - - - - - -3.65 - - - -1.58 - -1.93 - 2.72 - - - - - - - -5.17 - - - - - - - 3.26 1.77
- - 1.91 -2.39 4.77 - - - - - - -5.36 - - - -2.09 - - - -4.91 -6.88 - - - - - - - - - -5.03 - - - -6.06 1.94 0.64
Zm00001d049151 (GRMZM2G118534)
- - - 3.08 2.62 -0.29 - - - - 2.37 -2.06 - - - 2.31 - - 1.09 -2.55 -1.75 - - - - - 1.45 0.24 - - - - -0.46 0.48 - - 1.36
Zm00001d049599 (GRMZM2G446189)
- - - - 2.6 1.81 1.54 - - - 2.17 -1.12 - - -2.03 -0.8 1.73 - 0.08 -3.84 0.31 - - -1.0 -0.68 0.14 - -0.37 - - -1.27 - -0.86 - 1.89 0.0 2.13
- - - - 1.63 2.3 - - - - - 0.44 - - - -0.27 2.58 - 0.87 - - - - - - - - - - - - - - - 3.54 -0.7 2.76
Zm00001d050243 (GRMZM2G146177)
- - - 4.1 2.95 - - - - - - - - - - 1.67 0.73 -2.05 2.41 -2.22 -2.97 - - -2.34 -3.15 - - - - - - - - - -0.09 -3.03 -
- - - - 4.14 - - - - - - - - - - 4.28 - - - - - - - - - - - - - - - - - - - - -
Zm00001d050563 (GRMZM2G119270)
- - - - 1.97 - -0.52 - - - - -1.56 - - - -4.1 - 4.12 -1.68 3.56 -3.26 - - - - -1.0 - -0.87 - - - - -0.97 -4.0 - - -0.42
- - - - 3.45 - - - - - - 2.54 - - - 1.38 - - - 3.7 - - - - - - - 2.2 - - - - - - - - -
- - - - 1.52 - - - - - - - - 3.15 - 2.65 - - - - 1.84 - - - - - - - - - - - - - - - 3.94
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - 1.3 - 1.13 - - - 0.98 -0.07 - - - 3.52 - - - -4.02 - - - - - - - - 3.96 - -2.47 - -2.09 -4.17 -2.58 0.31 -1.47

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.