Heatmap: Cluster_350 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d000107 (GRMZM2G120938)
1.3 0.78 2.98 2.91 2.89 - -10.33 -4.98 -7.44 -8.6 - -2.74 -3.97 -4.6 0.11 -4.36 -1.9 -1.28 -3.53 -9.15 -1.74 -3.61 - -2.66 -2.12 -1.65 -0.07 -6.07 - - -3.67 - -8.9 -5.26 1.91 0.23 -0.42
Zm00001d002338 (GRMZM2G044629)
1.63 -0.8 2.83 1.09 1.74 -2.33 -1.53 -2.18 -0.4 -1.2 -2.95 -1.46 -0.32 0.42 -0.04 -0.2 -0.88 0.47 -0.64 -5.39 -1.38 -0.54 -3.1 -1.32 -0.14 0.35 -1.97 -0.15 -0.64 -0.53 -2.54 -2.26 -0.66 0.2 0.34 0.37 -0.44
Zm00001d005002 (GRMZM2G115658)
2.59 0.34 1.99 2.22 1.46 -0.81 -0.61 -1.71 -3.53 -2.1 -1.78 -1.23 -1.16 -2.98 -2.63 1.57 -1.66 -0.95 -3.12 -9.64 -2.91 -2.69 -0.13 -3.32 -0.44 -1.69 2.09 -1.99 -3.08 -6.2 1.17 -6.51 -3.76 -0.97 -3.25 -1.0 -0.56
0.95 - 0.77 1.37 1.98 -1.74 -1.32 - -2.0 -3.09 -0.88 0.34 -1.07 0.29 1.62 0.51 -0.53 1.61 0.88 - -2.26 - -0.8 - -0.51 2.17 -2.07 -0.43 - - -1.71 - - -1.29 -0.45 0.81 1.02
Zm00001d009121 (GRMZM2G378054)
0.03 -6.23 -0.33 2.1 1.35 -0.37 -1.39 - -0.61 -3.26 -1.86 -0.9 1.11 0.25 1.29 0.32 0.64 1.05 -1.39 -8.77 -2.74 - -0.9 -3.06 -0.79 2.79 -1.78 -3.1 - -3.41 -5.13 - -5.63 -3.33 0.89 0.46 1.24
Zm00001d012109 (GRMZM2G061396)
2.44 1.67 1.13 0.79 1.66 -4.29 -2.7 -3.25 -1.99 -1.6 - -2.46 -0.68 -1.52 -1.69 0.89 -1.33 -0.89 -1.35 -7.69 -0.52 -0.25 - -3.36 0.96 -0.0 2.57 -1.31 - - -0.29 - -3.65 -0.02 0.87 -1.22 -0.49
Zm00001d013011 (GRMZM2G043802)
4.07 - - 2.96 2.81 -0.77 - - - - - -2.94 - - -4.06 -3.44 - - -0.07 1.29 -2.52 - - - -4.01 - - -3.5 - - - - -1.59 -1.64 - -2.11 -
Zm00001d013896 (GRMZM2G018695)
1.3 -2.61 1.87 -0.35 1.51 -1.1 -1.03 -2.31 0.26 -0.58 -0.61 -0.78 -1.17 -0.43 0.47 0.15 -1.23 0.13 -0.42 -7.5 -0.29 -0.82 -1.11 -0.55 -0.42 0.77 -1.49 -0.27 0.98 0.54 -1.47 0.57 -1.84 -0.54 1.67 -0.53 -0.77
1.93 -0.44 1.13 1.46 1.21 -0.68 -1.48 -1.13 -0.07 -0.8 -0.92 -0.66 -0.74 -0.68 0.38 0.18 -0.74 0.33 0.35 -0.82 -0.53 -2.13 -0.1 0.43 -1.29 -0.94 0.31 -0.76 -0.37 0.02 -0.3 0.3 -1.25 -1.93 0.65 -0.08 -0.48
Zm00001d015334 (GRMZM2G390350)
1.98 -5.01 3.33 -0.17 1.99 -1.48 -1.47 -3.74 1.46 1.67 -3.28 -1.7 - -1.76 0.37 -3.27 -1.52 -0.62 -3.62 -5.73 0.33 0.1 - -2.05 -0.35 0.3 -2.12 - - - -2.66 - -7.41 -4.71 0.2 0.54 -0.83
Zm00001d015977 (GRMZM5G886185)
2.31 -0.1 3.69 2.36 2.13 -4.96 -5.8 -3.33 -10.15 -7.37 -4.61 -4.48 1.34 1.31 -3.42 0.18 -2.7 -3.15 -7.71 -8.06 -1.84 -2.69 - -3.09 -1.87 - -1.64 -6.16 - -5.41 -3.62 - -9.24 -4.96 -2.3 -2.29 -2.57
Zm00001d016883 (GRMZM2G128029)
-0.94 - - - 3.43 - - - - - - -4.1 - - -7.88 -4.72 - -4.17 - -4.18 - - - - - 4.61 -3.74 -2.12 - - -1.98 - -2.34 -1.83 - -3.26 -
Zm00001d017485 (GRMZM2G056908)
4.0 -2.47 2.26 1.97 3.44 - -5.65 - - - - -6.07 - -8.63 -7.12 -6.51 - - -11.12 -6.74 - - - - -6.6 -2.63 -3.99 -8.16 -3.79 - - - -9.96 -7.84 -3.15 -1.0 -2.13
Zm00001d017494 (GRMZM2G327266)
1.36 -10.37 4.18 0.28 1.94 -5.31 -4.85 - 1.47 0.68 - -2.2 - 0.06 0.47 -4.2 -8.88 0.69 -0.06 -10.15 -9.25 - - - -7.24 -7.33 -1.91 -5.08 - - - - -4.75 -6.85 -3.26 -0.48 -1.21
4.41 - -3.99 1.17 3.6 - - - - - - -5.83 - - - -7.26 - -0.94 -2.84 -1.2 - - - - - - - - - - - - -3.86 -4.34 - -2.81 -
1.01 0.29 - - 2.95 - - - - - - - - - - -2.17 - - - - - - - - - - 1.89 - - - 4.32 - - 1.0 - -2.44 -
Zm00001d020773 (GRMZM2G070375)
-0.49 -1.65 1.41 0.4 1.79 -2.5 -3.99 -0.82 -0.38 -0.41 -3.12 -1.0 -4.02 -0.52 0.47 -1.45 -0.93 1.15 -1.48 -9.98 0.48 -1.56 -2.44 0.34 -0.21 0.05 0.81 0.6 1.18 2.16 -0.93 -1.84 -2.01 0.26 -0.2 0.3 -0.93
Zm00001d020903 (GRMZM2G174799)
2.7 -0.96 2.71 1.43 1.75 0.03 -0.61 -2.24 0.94 0.22 -5.75 -1.12 -1.58 0.55 0.26 -0.5 -6.08 0.03 -4.69 -7.51 -4.89 -4.59 -5.25 -6.34 -3.0 -1.47 -1.37 -1.71 0.85 -7.17 -5.74 -3.08 -5.22 -2.54 1.13 0.27 -1.59
Zm00001d020927 (GRMZM2G111152)
1.24 -2.64 3.04 2.37 2.2 - -4.87 -2.09 -1.53 -5.27 - -3.34 - -2.47 -1.01 0.47 -3.36 -0.58 0.55 -7.62 -0.66 -3.28 -3.96 -2.96 -0.77 - 1.87 -1.03 0.36 - 0.32 - -1.03 -0.95 -1.76 0.06 -0.14
Zm00001d021533 (GRMZM2G010640)
3.97 - -3.96 2.88 3.32 - - - - - - -6.16 - -6.55 -3.88 -5.33 -7.33 -1.0 -4.75 0.27 -7.5 - - -7.84 -7.76 - - -5.53 0.67 - - - -6.54 -5.04 - -1.95 -3.36
4.22 -3.09 -3.12 2.63 3.46 - - - - - - -6.8 - - -4.37 -2.63 - - - -3.52 -6.62 - - - - - - - - - - - - -5.59 -4.44 -1.28 -3.0
1.31 -3.92 3.98 1.57 1.78 -0.7 -2.51 -5.51 1.01 1.33 - -2.06 -3.14 -0.12 -0.08 -0.94 -8.58 -4.67 -8.02 -5.37 -5.6 -6.12 - -9.71 -5.55 -0.33 -2.27 -1.35 - -1.11 -4.14 -4.56 -4.35 -2.98 -1.26 0.24 -1.45
Zm00001d022279 (GRMZM2G427903)
4.29 -5.7 -3.87 2.67 3.4 - - - - - - - - -5.78 - -12.12 - - - -8.92 -7.21 - - - - - -3.55 - - - - - - - - -2.67 -2.46
Zm00001d022472 (GRMZM2G414475)
3.58 - - 3.89 2.99 - - - - - - -8.81 - -3.07 -3.6 -3.95 -3.78 -0.86 - - - -1.02 - -0.96 -5.37 - - -5.69 - - - - - -3.2 -7.14 -2.08 -
Zm00001d024237 (GRMZM2G147683)
3.86 - - 1.32 3.44 -1.15 0.03 - -2.03 -1.85 - -4.43 - - -4.07 -2.04 - - -2.96 0.44 - - - - - - - - - - - - - - 2.23 -2.61 -1.1
Zm00001d024738 (GRMZM2G060721)
3.23 - -5.34 4.48 2.21 -7.54 - - - - - -5.89 - - -4.73 -9.79 - -5.61 -4.98 -8.04 - - - - - - - -8.06 - - - - - -6.42 - -1.37 -2.99
Zm00001d024740 (GRMZM2G160062)
3.6 - -3.79 4.17 2.66 - - - - - - -5.74 - -4.31 -6.26 -10.31 - - -4.43 -5.86 -4.44 -4.43 - - - - -5.08 - - - - - - - -9.17 -3.04 -4.19
Zm00001d026169 (GRMZM2G100931)
4.48 -5.19 -3.32 -1.97 2.66 - - - - - - - - - -7.07 -4.33 - 1.67 1.22 -1.7 - -3.07 - - - - - - - - - - - -6.61 - 0.96 -
-0.21 -2.22 0.74 1.5 1.87 -0.53 -1.03 -0.49 -1.08 -1.24 - 0.5 - - -1.51 -1.45 0.72 0.78 -0.16 -5.03 -6.77 -1.14 3.41 0.37 0.78 -1.46 -2.23 -1.22 - -1.36 -1.95 -2.92 -3.65 -1.93 0.28 -0.89 -0.89
Zm00001d026605 (GRMZM2G343144)
3.77 - -4.39 3.48 3.55 - - - - - - -9.48 - - - -8.76 - - -4.94 -8.76 - - - - - - - -9.48 - - -4.58 - - -6.02 - -2.7 -2.4
Zm00001d027623 (GRMZM2G054111)
2.57 1.57 3.83 1.06 2.59 - -5.64 - - - -5.76 -4.97 -5.33 - -2.49 -1.45 - -2.88 - -9.71 -9.12 - -1.93 -1.5 -4.59 -0.21 0.29 -4.85 - - -2.96 - -8.58 -7.17 0.98 -3.6 -3.93
Zm00001d028798 (GRMZM2G365240)
3.25 1.01 3.59 - 2.97 -3.69 -3.96 - - - - -4.48 - -0.45 -3.21 -2.49 -3.23 - -0.32 -5.79 - - 1.2 - -3.94 - -1.77 -4.92 - - -2.22 - -5.29 - -2.25 -2.41 -3.01
Zm00001d029816 (GRMZM2G017011)
3.59 -6.86 -7.16 2.06 3.06 - -5.99 -4.75 1.1 1.64 - -2.56 1.49 -3.96 -0.82 -0.28 - -3.33 -5.78 0.04 -1.78 - - -6.35 -2.04 - - -5.98 - - - - -7.9 -4.91 -5.66 -0.65 -1.53
Zm00001d031977 (GRMZM2G149442)
1.51 -0.17 2.51 2.0 1.66 -2.54 -2.61 -0.51 -1.42 -1.13 -2.45 -2.1 -0.95 0.11 -1.54 0.45 0.39 0.54 0.38 -7.21 -1.27 -0.88 -2.88 0.76 -0.54 -1.65 -0.58 0.28 -3.08 -0.13 -1.38 -1.01 -0.99 0.24 -1.39 -0.62 -1.14
Zm00001d032005 (GRMZM2G329146)
3.36 -2.41 - 1.81 2.31 - - - - - - -1.1 0.75 1.82 -0.94 -0.19 - -1.63 -0.56 -4.63 -1.82 - -0.98 -1.78 -2.93 0.45 - - - - - 1.5 - -0.05 0.08 0.23 0.46
Zm00001d033358 (GRMZM2G329757)
1.27 - - - 3.02 - - - - - - -6.39 - - -5.66 -2.78 - - -4.16 - -0.99 - - -3.79 - - - -5.27 3.28 - - 3.99 - - - -3.86 -
Zm00001d034084 (GRMZM2G008029)
0.12 - - - 4.98 - - - - - - -1.4 - - - -1.42 - - 0.32 -1.57 -3.12 - - -0.99 -2.06 - - -4.6 - - -2.03 - -3.39 - - - -0.57
Zm00001d035214 (GRMZM2G055238)
1.74 -7.06 1.28 0.59 1.67 -2.25 -3.3 -3.85 -3.56 -4.38 -1.76 -0.9 - 1.11 1.43 -4.43 -2.34 -2.59 -1.76 -7.67 -1.7 -3.01 -3.8 -5.47 -0.4 3.23 -1.23 -0.41 0.83 -4.48 -1.55 -3.42 -2.63 -1.28 0.11 -0.26 1.61
3.22 - -2.92 3.6 3.8 - - - - - - -6.88 - - - -6.02 - - -4.34 -4.99 -1.77 - - - - - - -5.02 - - - - -2.84 - - -0.91 -1.03
Zm00001d036840 (GRMZM2G048192)
1.13 -8.01 3.49 1.72 2.04 -0.79 -0.44 -1.7 0.33 -0.38 -0.34 -1.02 -2.69 0.28 0.36 0.05 -6.8 -0.13 -0.97 -4.67 -8.42 -4.55 0.72 -9.08 -2.31 -3.87 -2.32 -3.38 -2.81 - -5.99 -3.8 -5.15 -3.75 0.28 0.39 -0.1
Zm00001d037057 (GRMZM2G134888)
0.97 -3.0 0.97 0.61 1.61 0.33 0.74 -1.79 -1.17 -0.61 0.1 0.68 -7.43 -0.79 0.89 -5.25 -0.36 -0.12 0.26 -7.93 -1.56 -0.8 0.48 -1.16 0.18 0.01 1.63 -1.22 - 1.6 -2.68 -5.68 -5.75 -1.24 -1.14 -0.5 1.48
Zm00001d037792 (GRMZM2G036436)
3.36 0.56 -1.6 1.52 2.6 -4.33 -8.05 -6.84 - - - -3.76 - 0.76 -3.22 -1.93 - -1.39 -2.91 2.16 -2.7 - - - -0.73 1.23 0.61 -0.02 -1.77 -0.54 -5.08 - - -3.2 -1.23 -0.77 0.12
Zm00001d038483 (GRMZM2G429840)
3.05 -4.45 0.19 1.48 2.19 -2.87 -4.41 -2.24 -1.0 -3.33 -4.02 -1.02 0.3 -0.1 -0.44 1.38 -2.78 -0.91 -0.55 0.62 -1.67 -0.85 -4.02 -0.6 -0.91 -1.59 -0.59 -1.46 - -0.7 -1.1 1.21 -2.81 -0.22 -0.4 -0.21 -0.51
Zm00001d039351 (GRMZM2G463986)
3.65 0.99 -0.97 0.41 2.85 - - - - - - -7.62 -5.47 -1.97 -3.5 -4.19 - -3.17 -2.31 - - -4.67 -3.88 - -0.95 2.34 0.36 -2.77 - - -3.67 - -6.47 -2.16 2.26 -2.04 -2.15
Zm00001d039748 (GRMZM5G826700)
4.06 -5.13 -3.7 2.71 3.63 - - - - - - -8.52 -3.77 -4.63 -1.66 -4.91 - -5.15 -5.4 -4.11 -6.54 - - -5.88 -3.02 -6.24 -5.92 -6.25 - -2.31 -8.06 - -8.37 -6.1 -4.24 -2.63 -3.94
Zm00001d045571 (GRMZM2G066862)
3.54 - -3.93 3.8 3.48 - - - - - - -7.37 - - - -9.0 - - - -5.69 -6.8 - - - - - - - - - -7.12 - - - - -2.92 -3.68
Zm00001d047064 (GRMZM2G116452)
3.83 -5.25 -4.69 2.81 3.03 - - - - - - -9.6 - -1.68 - -7.11 - -5.3 -4.1 -4.67 -6.17 - - - -6.95 - -4.42 -7.42 - - 2.74 - - - - -2.04 -4.06
Zm00001d047094 (GRMZM2G073260)
3.61 -6.98 -2.64 3.4 3.7 - - - - - - -7.79 - - - -8.58 - - -8.01 -6.06 - - - -6.35 -8.37 - -4.84 - -0.22 - - - - -5.48 - -3.1 -4.01
Zm00001d047353 (GRMZM2G127029)
3.6 - -3.28 4.42 1.58 -5.39 - - - - - -8.17 - - - -10.49 -4.52 - - -8.11 -5.22 - - -6.26 - - - -7.71 - - - - -7.33 - - -2.24 -3.06
Zm00001d048352 (GRMZM2G126802)
3.72 -4.5 -2.72 -1.28 3.61 - -4.09 -2.78 -3.22 -1.79 - -2.27 - -2.0 0.38 -1.09 - -2.24 - -1.63 -5.15 - - -2.51 -5.02 - - -3.85 - - 2.39 - -0.73 -4.42 -2.79 0.21 -3.18
Zm00001d048383 (GRMZM2G089686)
3.36 3.08 2.63 -1.18 2.93 - - - - - - -7.82 - -3.49 -6.37 -1.3 - -6.76 - - - - - - -6.19 -3.74 -0.19 -4.14 -0.27 - -1.3 -3.11 -6.24 -3.23 -1.98 -4.33 -0.57
Zm00001d049742 (GRMZM2G113252)
1.41 -3.3 2.93 1.87 1.99 0.02 -1.09 -0.61 0.64 -0.02 -1.36 -0.41 -2.26 0.48 0.21 -0.24 -2.77 0.61 0.32 -11.78 -2.16 -2.61 -1.8 -4.18 -1.9 -1.51 -1.45 -2.77 -2.12 -2.91 -3.23 -5.65 -4.6 -2.28 -0.11 1.02 0.09
Zm00001d052331 (GRMZM2G138949)
1.54 - 3.44 3.1 2.93 -3.06 -7.93 - -0.72 -1.49 - -4.18 - -1.22 -1.17 -2.39 -6.37 -2.03 -7.65 - -7.7 - - - -5.17 -6.13 -1.76 -1.81 - - -2.09 -2.18 -2.11 -2.37 1.03 -0.45 -1.93
Zm00001d053320 (GRMZM2G112619)
4.46 -6.75 -3.57 2.32 3.29 - - - - - - -10.15 - - -8.64 -8.76 - -7.13 - -9.66 - - - - -7.63 - -4.64 - - - - - - - -11.61 -3.57 -4.53

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.