Heatmap: Cluster_252 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d000066 (GRMZM2G363310)
-3.61 -2.6 0.02 - -0.32 - -3.2 -1.91 - - - -0.3 - - - 4.09 - -1.29 -3.44 0.78 1.46 - - -1.04 - 1.72 -0.45 0.72 - - - - -3.7 - 0.26 - 2.12
- - 1.81 1.07 0.91 0.01 0.36 -2.21 - - 1.89 0.77 - 0.71 -4.07 1.89 -0.7 - 0.83 -6.16 -2.3 -2.63 - -1.5 -0.28 -3.01 0.86 1.75 1.01 -1.52 - - 1.19 - -2.41 -1.03 0.71
-4.29 -6.12 -2.02 -1.85 1.28 -2.94 -1.14 - - - 1.27 -0.45 - 2.51 -4.75 2.37 -0.85 - 1.27 -1.29 1.02 -0.23 - -7.67 -0.55 1.02 -0.65 0.52 - -0.12 -0.89 - -0.24 - -1.31 -1.8 2.41
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
Zm00001d005162 (GRMZM2G468367)
-1.53 -2.68 -1.21 - -1.63 - - - - - -1.27 -3.14 - - - 0.92 -2.54 - -2.68 - 4.76 - - - - - -0.08 -4.56 - - -2.85 - -0.4 -4.22 -0.49 1.61 -2.36
- - - - -3.76 - - - - - - -5.79 - - - 1.06 - - - -3.29 4.96 - - - - 0.18 - -4.38 - - - - - - - 1.17 -2.05
- - - - - - - - - - - -0.48 - - - 0.22 - - - - - - - - - 4.97 - - - - - - - - - 1.95 -
Zm00001d005815 (GRMZM2G444393)
- - - - 1.5 - - - - - - -5.03 - - -5.05 2.67 - - - -2.8 - - - - - - - - 4.6 - - - - -3.68 1.21 -1.33 -0.65
Zm00001d006068 (GRMZM2G703299)
- -2.17 - 1.1 -0.66 - - 0.73 - - - 1.58 - - -3.19 3.13 -2.03 - -1.63 -3.49 - -0.05 - -1.11 1.5 - - -0.24 - - - - 3.77 -2.66 -3.11 -4.23 -0.34
- - - - - - - - - - - -1.48 - - - 3.02 - - - - 3.55 - - - - - - - - - - - - - 4.07 - -
-0.98 1.73 -0.05 0.57 -1.13 -3.69 1.17 0.23 -0.32 -4.68 0.53 -1.7 0.15 -1.93 -0.55 0.58 0.8 -0.99 -0.49 -4.82 -4.07 -0.89 -0.16 1.19 0.96 -1.45 -0.29 0.66 - - 0.68 -1.19 1.47 1.66 -1.39 -1.35 -1.38
- - - 4.03 -1.26 - - 3.24 - - 0.72 -1.64 - - - 2.59 - - 0.78 - - - - - -1.27 - - - - - - - -3.92 - - - -0.79
- - - - - -1.55 - - - - 4.04 -0.9 - - - 1.82 - - 2.72 2.01 - - - - - - - -3.0 - - - - 2.43 - - - -
- - - - -0.11 -3.47 - - - - -0.1 0.59 - - -1.82 1.95 - - 1.43 -4.19 - - 3.59 - - - -1.83 1.49 - 0.16 0.52 - -1.24 - 1.11 -0.07 2.44
- - - - 0.75 - - 1.41 - - - -0.37 - - - 1.96 - - - 1.88 -1.38 - - - - - - 3.71 - - - - 3.39 - - -1.58 -
- - 2.4 - 1.72 - - 2.22 - - - 0.18 - 2.45 -0.36 0.56 1.25 - - - - - - 2.16 - - - - - - - - 0.09 1.16 -0.62 - 2.04
- - -0.75 - 0.31 -1.06 - - - - - -1.54 - 0.36 -1.99 2.56 -0.84 - 3.21 0.26 - - - - - - 2.59 -0.36 - - 1.08 - - - -0.6 0.33 2.35
- - - - -2.15 0.64 -2.32 1.65 - - - -0.62 - - -4.69 1.81 - - -0.23 -2.44 -3.22 - - - - - - -0.1 - - 4.45 - -0.98 -0.34 1.28 - -
Zm00001d014142 (GRMZM2G133891)
- - - - -0.71 3.1 - - - - - -0.66 - - - 1.58 - - 2.92 -3.54 - - 0.14 - - - - 1.16 - 1.94 2.93 - -1.9 - -2.58 - 0.35
- - 0.96 - -1.14 - -1.43 - - - 1.17 0.37 - - - 2.98 -1.2 - 3.89 -2.2 -2.13 - - - - 2.41 0.23 - - - - - -1.72 - -3.86 -2.54 -
Zm00001d015062 (GRMZM2G475620)
- - - - - - - - - - 4.04 -1.28 - - - 2.72 - - 2.6 - - - - - - - - -1.56 - - - - 2.81 -2.3 - - -
- - - - - - 4.08 - - - 3.19 -0.09 - - - 0.41 - - - -2.03 - - - - - - - 1.74 - - - - - - 2.34 - -
Zm00001d017843 (GRMZM2G161854)
- - - - - - - - - - - - - - - 1.9 - - - 5.06 - - - - - - - - - - - - - - - - -
- - - - 1.03 - - - - - - 2.18 - - 3.35 2.97 - - 2.1 2.57 - - - - - - - - - - - - - - - 1.13 -
- - - - 2.05 - - - - - - -3.16 - - - 2.58 - - -0.49 - 3.53 - - - - - - 1.36 - - - - 1.44 - - - 3.22
- - - - -0.16 - - - - - - -0.57 - - - 1.27 - - 0.92 -3.7 4.45 - - - -1.98 - - - - - -1.13 - -3.87 - 1.45 2.44 -1.95
- - - - - - - - - - - - - - - 2.67 - - - - - - - - - - - - - - - - - - 3.13 - 4.45
- - - - -0.35 0.21 - 0.28 - - - -0.67 - 4.35 - 1.1 - - - - - 1.65 - - -2.68 - - -0.3 - - - - -1.31 - 0.59 - 2.24
- - - - 0.35 - - - - - - 0.96 - - - 1.65 4.05 - - 1.51 -0.3 - - - - - - 2.93 - - - - - - - - 1.47
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - - - 3.46 - - - - -0.66 - - - 1.63 - - - 4.48 - - - - - - - - - - - - - - - - -
Zm00001d025589 (GRMZM2G425920)
- - -0.6 -4.58 -0.33 -0.56 -1.49 1.18 - -7.72 0.3 -2.72 -5.68 2.07 -3.29 1.97 1.87 -3.75 0.38 2.04 1.87 0.21 1.18 -3.09 -4.11 0.59 1.09 -0.81 - -3.06 -3.58 - -1.57 -5.12 -5.08 -1.16 -0.05
- - - - 2.56 - - - - - - - - - - 4.96 - - - - - - - - - - - - - - - - - - - - -
- - - - -8.02 - -1.6 - - - 2.13 -2.08 - - - 1.82 - - -1.46 - - - - - - - - - 4.67 - - - - - -0.16 0.81 -
Zm00001d026508 (GRMZM2G084473)
- - - - -1.0 2.01 - - - - - -1.05 - - - -0.95 2.49 -2.08 0.18 -2.86 - - 3.91 -4.42 - 0.99 - 0.34 - - -0.96 -0.17 -4.05 - 1.52 0.15 -0.74
- 0.75 -3.53 0.6 -0.11 -1.05 -1.08 -1.63 - - -3.75 -1.73 - 2.34 -9.57 0.68 0.96 -6.36 -0.06 -4.02 0.21 -4.78 0.57 -6.75 -2.05 -0.78 -1.63 -2.55 - 3.8 -0.5 - -0.48 -3.36 -9.73 -1.99 0.78
Zm00001d028582 (GRMZM2G441511)
- - - - 2.34 - 0.5 - - - - 0.83 - - 0.03 2.37 - 2.69 - - - - - 0.79 - - - 3.27 - - - - - - 1.49 0.95 -
Zm00001d029087 (GRMZM2G011240)
-3.66 -3.15 2.35 - 0.23 - -3.27 -2.01 -1.43 -2.93 -4.24 0.29 -0.77 -2.19 -1.9 1.38 -1.04 -0.34 -4.81 -6.91 -0.11 -0.42 0.4 -2.52 -0.42 -1.1 0.31 -0.26 - - 1.86 -1.64 1.22 2.24 0.35 -0.14 1.91
Zm00001d029091 (GRMZM2G318780)
-4.78 -4.05 1.05 -3.26 -0.24 -1.64 -1.03 -2.05 -3.32 -2.95 -0.94 -0.58 -2.96 0.63 -2.01 1.19 -4.03 -1.25 -3.87 -7.69 -2.09 -3.09 2.77 -3.42 -0.04 -3.83 -1.3 1.16 -0.86 -0.13 2.58 -2.57 0.78 1.35 0.42 -0.18 0.64
- - - - 0.78 - - - - - - 0.87 - - - 2.44 -0.97 - -0.07 1.99 -2.13 - - - 0.38 - - -0.82 - - - - 4.2 - -2.26 0.9 -
- - - - - 3.45 - - - - - - - - - 3.72 - - 1.83 - - - - - 3.23 - - - - - - - - - - - -
Zm00001d033380 (GRMZM2G163796)
- - - - 1.37 2.21 -3.49 -2.36 - - -0.79 -0.78 - - - 2.24 - - 0.04 -2.56 -4.78 4.11 1.63 - 0.45 - - -2.84 - - - - -1.45 - -5.04 -4.99 -3.75
- - - - 2.09 0.8 - - - - - - - - - 3.41 - - - - 0.21 - - - - - - - - - - - -3.22 - -3.94 - 4.25
Zm00001d033411 (GRMZM2G371839)
- - - 1.25 0.92 -3.14 - - - - 0.12 -1.68 - - - 3.2 - - -3.66 - 3.12 - - -2.34 - - - -3.38 - 1.26 0.76 - - - - -3.77 3.14
Zm00001d034441 (GRMZM2G068989)
- - -1.64 -0.3 -1.21 2.76 2.36 -0.21 -1.12 -0.34 0.12 1.43 -1.35 - -0.16 0.35 -2.22 -1.72 0.09 - 0.12 -1.72 -1.08 -1.32 -2.3 - - -0.08 - -0.29 -0.16 - -1.73 -2.33 0.87 1.68 1.49
-3.06 - -5.22 3.47 -1.49 1.84 -1.19 -2.38 -2.73 -1.6 0.24 -1.44 -3.22 -1.4 -0.31 -0.29 2.33 -0.62 1.25 - -2.44 -5.18 -1.11 -1.39 -3.43 1.3 -1.2 -2.97 - -1.81 -3.84 - -3.6 -4.81 -5.09 1.37 0.81
- - - - 1.2 0.53 - - - - 1.17 -0.39 - 0.04 - 2.21 - - -0.4 1.45 1.72 - - - -1.43 0.83 - 2.58 - - 2.08 - 2.07 - - 0.31 -
Zm00001d036434 (GRMZM2G180307)
- - - - -0.26 - 2.23 - - - 0.95 - - 0.42 - 2.74 - - 3.67 0.04 - - - - - - - 1.13 - - - - 1.71 0.27 - 0.14 -
- - - - 0.36 - - - - - - 2.26 - - - 3.66 - - - - 3.62 - - - - - - - - - - - 2.59 - - - -
Zm00001d037921 (GRMZM2G055606)
- - -0.4 1.7 -0.27 -0.63 -2.21 -3.46 - - -1.69 -1.29 - 3.25 -3.25 1.55 -2.84 -3.31 -0.57 -7.2 -2.56 0.97 - - -2.74 -2.47 1.34 1.26 - 1.79 0.46 - -0.49 -9.28 1.12 -2.87 0.85
Zm00001d037947 (GRMZM2G020998)
- -4.35 - - -3.04 -2.58 - -0.08 -4.28 - - -4.76 -0.92 - -7.55 -0.31 2.31 1.33 1.69 -2.92 -0.58 -2.55 - 0.43 -0.33 -1.55 - 1.09 1.09 2.24 1.13 0.14 1.52 2.01 -0.96 -1.13 -
Zm00001d038434 (GRMZM2G095646)
-5.82 - - - -0.05 -0.37 - -1.37 - - - -0.12 - 4.36 - 1.28 - - - -4.84 - 1.52 - -4.78 -2.75 - - 1.44 - - - - -1.45 - 0.17 -6.19 1.88
- - - - 3.02 2.65 - - - - - - - - - 4.5 - - - - - - - - - - - - - - - - - - - - -
Zm00001d040104 (GRMZM2G012472)
- - - - -4.24 - -2.75 -1.23 - - - -0.44 - -1.14 - 1.82 -2.1 - -0.93 - 3.73 - - - - - - -3.09 - 1.0 - - 1.81 - 1.14 -4.9 3.3
- - -1.15 - -4.43 - - - - - - -8.4 - - - 1.09 - - 0.02 - - 4.81 - - - - - - - - - - -4.21 - -1.78 2.29 -
Zm00001d041448 (GRMZM2G139624)
- - - - 2.27 - - - - - - -1.2 - - - 2.78 - - -0.04 - - - - - - - - 3.57 - - - - - - 2.17 - 2.92
Zm00001d042150 (GRMZM2G170689)
- - - - -0.76 0.71 -1.0 - - - 0.26 -0.64 - -6.52 -10.33 1.38 2.94 -6.12 1.0 -6.87 - 2.21 -6.0 - -3.06 -0.13 - -0.29 - 3.43 -1.16 - -1.13 -2.85 - 0.3 -0.75
Zm00001d042157 (GRMZM2G179332)
- - -2.22 - 1.69 - 0.3 - - - - 0.97 - - 0.46 3.36 -1.95 - 0.27 - -0.15 2.5 - -3.71 -0.08 - - -1.6 - - 0.54 - 1.7 1.22 -4.2 1.17 -
- - - - 2.64 - -3.39 - - - 0.88 -2.33 - - - 2.65 - - 1.43 - - - - - - - - 1.99 - - - - - - - 1.96 3.56
- -0.85 0.42 - -1.14 1.11 - 2.59 - -0.73 - -3.45 1.31 - -1.85 0.54 - - 0.04 1.01 1.13 0.94 - - - 2.43 - -0.54 - - - 2.37 - -2.12 -4.01 0.39 0.65
Zm00001d044508 (GRMZM2G352858)
- -3.38 -1.77 - 1.49 -0.45 0.2 -0.73 -1.72 -0.99 1.92 1.05 -1.53 1.45 -1.55 1.41 -4.98 -0.82 -2.17 - -5.92 -2.91 0.83 -3.25 0.8 -1.38 0.15 -0.65 - - 1.98 - -2.82 -1.12 -0.26 1.16 2.08
Zm00001d044829 (GRMZM2G003167)
- - - 1.78 1.74 -0.48 2.22 -1.73 - - 1.13 -0.35 - 0.93 - 2.32 -5.46 -2.05 2.76 - -1.14 -2.21 0.38 - -3.64 -0.27 - 0.25 - -1.95 -4.86 0.26 -1.29 -4.88 -7.23 -0.54 -0.1
- - - - -2.86 - - - - - - -2.02 - - - 2.39 - - - - 4.89 - - - - - - - - - 0.56 - - - - -1.49 -
- - - - - - - - - - - 1.08 - - - 1.46 - - - - - - - - - - - - - - 4.06 - 2.89 3.01 - - -
- - - - -1.84 -1.35 -1.76 -1.34 - - - -1.79 - - - 0.34 -1.04 - 0.07 - - 2.62 - - -1.7 - - -3.84 - 4.59 -1.54 - - - 0.47 -2.71 -
- - - - 2.85 - - - - - - 0.08 - - - 4.39 - - - - - - - - - - - - - - - - 0.51 - - 2.66 -
- - - - - - - - - - - - - - - 2.13 - - - 5.03 - - - - - - - - - - - - - - - - -
- - - - -1.35 -1.39 - - - - - -5.03 - - -3.48 0.61 - - -3.07 - - 3.99 - - -0.52 - -0.45 -4.21 - 3.93 0.33 - - - -4.75 -0.72 -
- - - - -1.15 -1.36 -3.13 - - - - -1.65 - -0.3 -2.5 1.32 - - -2.8 -1.31 2.8 - - - -1.94 - - 0.87 - 0.59 1.1 - 0.46 - 3.76 - 2.02
- - - - 3.05 - - - - - - 2.32 - - - 3.92 - - - - - - - - - - - - - - - - 2.29 - - 1.85 -
- - - - -0.39 -1.81 -1.83 - - - - 0.33 - - -2.49 3.74 - - - 0.72 -1.73 - - - -0.24 - 0.29 2.67 - - - - - - 2.86 -0.67 1.37
- - -2.45 - -1.46 - 2.43 - - - 2.5 0.56 - - -0.05 2.24 - 1.37 2.14 -2.96 - -0.14 - - - - - 1.46 - - - - 1.51 1.9 -0.5 -2.45 -
Zm00001d050655 (GRMZM2G156105)
- - - - -7.17 -6.6 - - - - 1.86 -0.42 - 4.29 -1.31 0.82 -3.98 - 3.29 -3.25 - - - - - - - -7.03 - - - - -7.82 - -5.52 -6.15 -0.09
-1.0 - 3.76 - -2.66 - - -1.46 - - - -1.52 - - - 2.11 - - 2.21 - - - - - - - 3.64 - - - - - - - - -0.69 -
Zm00001d051851 (GRMZM2G006006)
-3.16 -1.85 -0.57 0.64 0.56 0.95 -0.41 1.35 - -4.87 -3.53 -2.05 -1.83 -3.44 -1.91 1.04 1.19 -1.97 -1.0 -3.5 -2.31 1.31 -4.88 -0.68 -0.35 3.15 -1.72 0.77 - 1.64 -0.43 - -3.35 -4.19 -0.35 -0.24 -0.31
- -1.28 -1.89 2.52 1.83 -0.25 -3.8 -0.32 - -3.15 -0.52 -1.64 - 1.19 -1.12 2.96 1.7 0.11 -4.07 -2.8 -1.48 - -0.26 1.57 - - 0.32 0.47 - - 0.14 - -1.67 -3.09 -5.33 -2.02 -0.96
-0.05 0.05 1.7 - 0.93 - - 0.08 -0.47 - - -1.5 - - -1.1 2.63 1.58 0.52 -1.42 -1.98 -0.59 1.37 0.68 1.65 0.18 - 0.85 0.38 - - -1.29 - -0.17 -0.09 -3.32 -0.54 -0.43
Zm00001d052467 (GRMZM2G403493)
- -3.36 -2.56 - 0.35 -2.22 -0.24 - - - 1.09 0.22 - - -4.67 1.08 -3.16 - -1.73 -3.8 2.16 - - -1.78 -3.08 0.86 -2.54 -1.44 - -0.55 -2.36 - 0.74 - 3.77 -3.24 2.29
Zm00001d052537 (GRMZM2G132880)
-4.91 - -0.12 - 2.91 -5.84 -5.93 -1.4 - -4.49 -3.21 1.01 0.29 0.31 -2.38 3.24 - -3.82 -3.57 -6.71 - -4.8 - - 2.9 - -4.19 -6.33 - - - - - -9.13 2.33 -0.87 -0.94
- - 5.12 - - - - - - - - - - - - 1.13 - - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.