Heatmap: Cluster_279 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - -0.35 -1.58 1.1 -3.69 - -4.15 - - -4.06 -6.74 -0.35 4.68 -5.53 2.22 - -6.63 -0.64 - -6.82 - - -7.22 -0.49 - -2.36 - - - -2.92 - -9.02 -3.75 -3.93 -3.7 -0.79
Zm00001d004788 (GRMZM2G315394)
- - - - -2.4 - 2.05 - - - - - - 4.39 - -0.21 - - -0.06 - 2.22 - - 2.08 - - - - - - - - -2.17 -0.9 -2.85 - -
-3.91 - -3.63 -3.78 -3.56 - -6.47 -2.65 -4.6 - -4.91 -2.67 -0.72 3.73 0.28 0.31 -5.71 -0.05 -1.43 -5.6 -0.54 -0.58 - -2.03 1.05 1.7 0.5 -0.34 - 1.06 1.02 0.78 -2.36 0.27 -0.02 -0.86 -0.55
Zm00001d009399 (GRMZM2G476069)
- - 1.23 - -0.96 -0.5 -2.43 0.09 -3.44 -4.52 -6.61 -1.33 - 3.83 -0.67 -4.07 - 0.41 -3.19 -5.58 - - -0.44 - -4.15 3.74 - -6.47 - - - - -6.33 -6.9 -1.61 -1.83 -0.91
- - - - -0.28 -2.39 -1.85 - - - - -2.83 - 4.76 - 1.53 - - -0.13 - -0.56 - - -1.14 - - - 1.28 - - - - -2.35 - - -3.41 -0.36
Zm00001d010921 (GRMZM2G383215)
- - - - - - - - - - - - - 4.84 - -1.1 - - - - - - - - - 2.74 - - - - - - -0.62 - - - -0.67
- - - 3.2 -5.7 - - - - - -1.11 -11.14 - 4.12 - 0.73 - - -7.11 -8.36 - - - - -5.07 - - 2.73 -0.38 - - - -0.69 - -5.42 -2.09 -
Zm00001d011290 (GRMZM2G175150)
- -5.88 -4.62 3.69 -4.03 -5.85 - -3.49 -5.6 -6.75 -2.21 -7.38 - 4.18 -5.78 -0.68 -1.86 -5.0 -5.33 - -1.99 -5.08 -1.31 -4.79 -6.55 - -4.74 1.37 - - -2.86 -2.65 -1.56 -6.8 -3.81 -2.01 -2.27
-1.31 -2.34 -1.64 -2.28 -0.66 -1.23 -1.17 -1.27 -0.2 -0.45 -1.25 0.0 0.75 2.05 0.54 0.01 -0.41 -0.61 -0.03 -10.41 0.31 0.16 -1.11 0.47 -0.75 2.6 -1.29 -0.75 -0.17 -0.38 -2.21 1.93 -0.93 -0.52 -3.87 -0.27 -0.76
Zm00001d014256 (GRMZM2G087944)
- - - - 0.34 -1.48 - - - - -1.34 -1.22 - 2.85 -2.15 1.42 1.62 - -0.72 - -1.95 -0.98 - - - 1.42 - - - -1.8 -2.2 0.52 2.94 2.55 - 0.04 -0.2
- - 0.93 - -4.27 - -1.6 - - - - -3.89 - 4.13 -6.74 -0.34 2.45 - 0.95 -3.31 0.92 - - - - -0.72 1.2 -0.29 - - -2.39 - 0.57 0.36 - -2.2 -3.52
Zm00001d016442 (GRMZM2G160273)
-1.93 -3.45 -0.85 -0.02 -0.98 -0.16 -1.43 -2.47 -3.58 -1.9 -3.99 -1.12 -1.04 4.14 -1.91 0.23 -1.6 -1.32 -0.55 -0.5 -2.16 1.52 -1.17 -0.55 -2.23 -4.47 -1.43 -1.52 - 1.26 -2.25 -2.98 -0.9 -0.28 -3.38 -1.08 -0.55
- - - - 0.77 - - - - - - 0.94 - 3.54 - 0.52 - - - 2.36 1.0 - - - - - - - - - - - 1.48 1.1 - 1.34 2.51
Zm00001d019469 (GRMZM2G062453)
- - 0.91 - 0.67 - - - - - - -1.45 - 4.94 - 1.24 - - - - - - - - - - - - - - - - - - - -3.79 -
Zm00001d019636 (GRMZM5G805566)
- - - - -0.8 - - - - - - -3.18 - 4.67 - 1.5 - - - - 2.82 - - - - - - - - - - - -0.05 - - - -
Zm00001d019825 (GRMZM2G448913)
-0.29 0.0 -0.27 - 0.95 - -3.48 -0.38 -3.65 - -2.72 -1.82 1.24 3.9 -3.2 1.42 -0.4 -0.55 0.26 -4.86 -1.65 -3.14 - -0.61 -1.19 -0.44 0.32 -2.08 - 1.68 -2.44 - -2.52 -2.24 -0.91 -2.47 -3.7
- - - - 0.46 - - - - - - -1.63 - 3.97 -0.67 1.39 - - - - 3.36 - - - - - - 1.63 - - - - 1.41 - - -1.44 -
Zm00001d020031 (GRMZM2G157933)
- - - - 0.41 0.39 -0.31 1.83 - - 2.62 0.5 - 2.93 -3.33 2.53 0.1 - 1.24 -2.55 - 0.36 - -2.27 -3.41 - - 0.06 - - - - -0.78 -5.31 - -1.2 0.76
- - - - - - - - - - - - - 4.68 - -2.21 - - 1.2 - - - - - - - 3.15 - - - - - - - - - -
-5.27 -5.09 -4.29 - 1.11 -0.59 -1.1 -1.85 - - 0.76 -0.29 - 3.54 -4.93 1.92 -1.91 -3.27 1.0 -1.08 -0.49 -1.91 0.16 -1.93 0.35 - -3.27 0.25 0.35 - 0.69 - -0.31 -2.33 -4.06 -0.23 1.49
Zm00001d022098 (GRMZM2G384516)
- - - 2.23 -4.43 - - - - - - -3.95 - 4.67 - -0.75 2.46 - -3.46 - - - - -4.16 - - - - - - - - -3.0 - -5.56 -1.42 -
- - - - -1.36 - - - - - - -0.24 - 5.09 - 0.7 - - - - - - - - - - - - - - - - - - - - -
Zm00001d023736 (GRMZM2G137510)
- - - - -9.2 -10.38 - -2.66 - -9.08 - -8.34 3.58 3.85 -4.59 -1.54 1.21 -0.39 -5.79 -7.52 -0.46 0.14 -7.77 0.81 1.61 -7.92 -4.74 -8.59 - - - - -6.44 -8.24 -3.77 -5.63 -3.17
- - -0.47 - 1.49 - - - - - -0.35 -0.91 - 2.92 - 2.69 -0.22 - -0.17 -0.05 2.33 - - - - 0.31 0.38 - - - 0.82 - 1.37 -1.78 - 0.38 0.95
Zm00001d024505 (GRMZM2G321023)
-4.95 - -4.8 0.97 -1.39 -1.46 -2.46 - - -4.51 -1.28 -2.97 - 4.13 -2.2 0.8 0.72 -1.24 1.7 -0.35 -1.32 - - -2.93 -6.49 -1.97 -1.91 1.35 - 1.76 -2.46 - -1.61 -3.59 - -1.55 -
- - - - 0.24 0.32 - - - - 0.6 -1.16 - 4.19 -2.57 1.24 2.39 - -1.04 - -1.49 -2.8 - -4.97 - - - - 1.16 - -2.64 - -1.2 -5.43 - 0.36 0.46
Zm00001d025556 (GRMZM2G158469)
- - - 0.54 -1.94 0.59 -0.84 -0.23 - - -2.29 -1.29 - 3.77 - -0.37 1.44 - 0.16 -5.95 -2.44 0.24 2.84 - - 1.16 - -1.74 - - - - -1.82 - - -0.19 0.39
Zm00001d028766 (GRMZM2G313272)
- - - -2.15 -0.25 -5.22 -5.01 - - - -1.16 -3.21 - 3.86 -5.49 0.44 -3.26 -1.77 -0.77 -0.66 0.9 2.53 - - -1.64 -0.68 -4.28 -2.74 0.34 1.48 1.87 - -1.96 -4.68 -2.49 -4.55 -0.39
- - - - - - - - - - - -0.09 - 4.32 0.41 -0.69 - 3.82 - - - - - - - - - - - - - - - - - - -
- - - - -3.66 - - - - - - -1.84 - 5.06 - -0.58 - - - - - - - - - - - 0.67 - - - - -1.43 -2.15 -1.23 - -
- - - - -0.79 - - - - - - 0.42 - 5.08 - - - - - - - - - - - - - - - - - - -1.37 - - -0.19 -
- - - - -0.17 -2.32 - - - - - -2.56 - 2.61 -4.77 1.53 - - 0.02 - 1.15 0.64 - - - - - - - 4.35 - - -1.2 -2.52 - -3.11 -0.26
- - - - -0.56 - - - - - - -2.5 - 3.4 - 1.9 - - - - 0.62 3.19 - - - 2.13 - -1.36 - - - - -2.0 - -0.71 -0.42 2.28
Zm00001d033694 (GRMZM5G857210)
- - - - - - - - - - - - - 5.21 - -3.45 - - - - - - - - - - - - - - - - - - - - -
- - - - -2.2 -2.68 - - - - 0.65 -1.66 - 4.65 - -0.08 - - -3.87 1.97 2.16 - - - - - - - - - -2.54 - -3.27 - - -4.27 -
-0.72 - - - -3.36 0.13 - - - - - -5.03 - 4.55 - -1.8 - - -1.51 0.06 - - - - - - - 2.56 - - - - 0.1 - - -3.31 1.61
0.14 - - - -3.53 -0.25 - - - - - -3.47 - 4.12 - -0.68 - - -1.85 - - 3.69 - -0.78 -3.22 0.67 - -0.93 - - - - -2.88 -0.54 -3.88 - -
Zm00001d036887 (GRMZM2G406331)
- -3.49 -2.61 - -0.26 -1.04 - -4.65 - - -1.13 -1.4 - 4.17 -6.24 2.12 -0.31 - -0.36 -3.71 - 0.7 -2.05 -3.57 -1.89 0.06 - -0.28 - - -5.03 - -1.12 -0.14 -6.64 -1.85 2.25
- - 0.84 - 1.08 - - - - - - 0.19 - - - 1.82 - - - -1.19 2.34 - - - -0.45 - 3.54 2.4 - - - - 0.42 -0.51 - - 1.69
Zm00001d037840 (GRMZM2G136161)
- - - - -0.26 -3.73 -2.16 - - - - -0.9 - 3.09 - 2.18 1.98 - 1.22 - -3.68 1.99 - -2.12 -1.28 2.34 - - - - - - -2.85 -0.44 -2.39 -0.22 2.12
Zm00001d038949 (GRMZM2G079754)
-3.39 - - 2.56 -1.03 - - - - - -1.04 -1.5 - 4.38 - -0.07 -3.01 -1.89 -3.74 -4.94 -1.08 - - -0.25 - - - -1.27 - - -2.68 - 0.53 - -1.14 -2.18 1.76
- - - - 1.08 - - - - - -0.3 -1.65 - 4.48 -1.91 1.57 - - -0.87 - -2.57 - - - - 2.39 - - - - - - -0.78 - - -4.17 0.69
- - - - 0.37 - - - - - - -0.83 - 4.21 - 2.36 - - 0.26 - 0.2 - - - - - - 0.99 - 2.46 - - -1.54 - -2.72 - 0.21
Zm00001d040708 (GRMZM2G044598)
- -4.86 - - -0.58 1.11 -5.44 0.7 - -4.27 -0.56 -1.55 - 3.71 -4.18 -0.71 0.65 -2.39 0.48 - -3.37 -3.06 - -0.07 -2.42 0.27 - -2.45 - -1.63 -0.32 - -2.75 - 3.21 -0.77 -0.67
- - -2.4 - -0.01 - - - - - 1.24 -1.28 - 4.91 -4.15 -0.3 - - -3.24 - -2.18 - - - -2.01 - - -3.82 - - - - -2.34 - - -2.5 0.27
- - - 0.9 0.06 -2.56 1.24 -1.59 - - - -1.09 - - -2.69 0.92 0.65 - 0.44 -2.72 - - 2.81 - 0.03 1.08 - -2.79 - 3.92 -4.7 - -3.68 - - -3.52 -
Zm00001d043419 (GRMZM2G127695)
-10.29 - -7.41 -6.06 -6.53 -7.59 -7.19 -1.37 -2.13 -2.85 - -2.67 3.63 3.03 1.3 -0.16 -2.74 0.49 0.11 -7.74 -0.9 -1.54 -3.71 -0.72 -0.37 0.41 -4.43 -2.58 - -4.49 -6.07 - -10.3 -2.25 0.49 1.06 0.86
- - - - -1.18 - - - - - - - - 4.34 - -1.75 - 3.21 -0.26 - 2.31 - - - - - - -1.68 - - - - - -0.57 - - -
- - - - -1.22 - - - - - - -2.45 - 4.75 - -2.26 - - 2.8 - - - - - - - - - - - - - 0.04 0.31 - - -
Zm00001d044863 (GRMZM2G103227)
- - - - -1.62 0.01 -2.53 - - - -1.25 -0.75 - 3.98 -8.97 0.49 0.51 -5.33 -0.84 -4.57 0.01 - 1.4 - -5.22 2.4 - -0.8 - - - - -2.2 - -4.51 -0.49 2.26
Zm00001d045048 (GRMZM2G046618)
-4.57 -1.88 - -0.71 -2.28 -4.92 -5.75 -0.69 0.67 0.38 -5.3 -0.78 1.49 3.28 0.63 0.24 -3.75 -0.93 -2.06 -7.6 0.36 -0.04 - -3.35 -0.21 - -0.19 -1.0 -2.46 -0.04 2.13 - -2.25 -2.31 1.21 0.93 -0.28
Zm00001d045344 (GRMZM2G003289)
- - - - - - - - - - - - - 5.19 - -0.7 - - - - - - - - - - - - - - - - - - - - -
Zm00001d046141 (GRMZM2G431691)
- - -3.0 -0.02 -0.38 - -0.87 1.39 - - -0.05 -0.92 - 4.4 -5.55 1.23 -1.57 -2.68 0.03 -2.72 - -0.32 - -0.72 -0.39 - -0.56 0.84 - - - - -2.68 -4.83 -5.24 -1.56 -2.97
- - -1.27 - -3.45 -1.24 -2.59 -0.07 - - - -0.96 - 4.39 -4.17 1.99 -1.14 - -1.36 - - -0.29 - -2.05 - 2.05 - -1.03 - - -0.86 - -4.47 -2.45 - 0.18 -0.03
- - 0.7 - -2.63 - - - -2.7 -1.88 - -5.15 - 3.42 -6.87 -1.59 - 0.39 -0.13 0.23 - - -2.54 -3.24 -1.38 - - 1.7 - - -2.57 0.83 2.65 2.99 -6.14 -2.4 -
- - - - -0.46 - - - - - - -3.39 - 4.83 - 0.31 0.61 - - 1.15 - - - - - - - - - - - - - - - - 1.41
Zm00001d048146 (GRMZM2G008751)
-4.99 -6.95 -2.55 1.01 -0.36 1.48 -0.93 -0.72 -0.81 -1.27 -0.73 0.33 -3.28 2.98 0.21 -0.73 -1.18 0.04 -0.54 -9.85 1.7 0.33 -0.3 0.62 -0.5 0.06 -0.66 -1.16 0.26 -0.5 -1.85 -1.72 -3.11 -0.91 -2.54 0.24 0.22
Zm00001d048468 (GRMZM2G382537)
- -1.76 -2.89 - -2.09 -3.39 -5.8 -3.84 - - -1.11 -4.76 -1.51 1.79 -6.07 -0.03 0.2 -1.57 -0.9 -5.09 -2.44 2.88 - -2.88 -0.25 -2.39 -0.71 -0.36 - 3.94 -0.03 -0.67 -1.4 -0.67 -1.91 -2.25 -1.93
- -2.25 - 0.85 1.18 - -1.64 - - - 0.21 -2.11 - 4.69 - 1.74 - - 0.43 -4.05 -5.03 - - -4.44 -2.71 - - -6.36 - - - - - - - -5.25 -2.91
- - - - -8.96 - -3.64 - - - - -4.25 - 3.96 -7.14 -4.37 - - - - - - - - - - - 0.76 - - -2.9 1.97 2.33 2.6 - - 2.15
- - 0.58 - 0.54 -1.21 -7.66 - - -7.49 1.21 -0.51 - 1.58 -8.61 1.74 2.16 - 1.05 -4.89 1.93 0.14 - - 0.11 1.45 1.76 -1.12 -2.31 - - - -0.45 -9.91 -8.12 -0.77 1.85
- - - - 0.56 - - - - - - 0.79 - - - 2.51 2.16 - 1.19 - 2.84 - - - 0.05 2.3 - - - - - - 2.04 - - -0.08 1.66
Zm00001d051216 (GRMZM2G078077)
-5.85 -9.07 -8.45 - -3.89 -5.14 -8.06 -1.23 -5.58 -5.62 - -3.53 0.26 3.63 -0.77 -0.3 -0.6 -1.22 -2.29 - 1.99 0.92 - 0.82 0.59 -0.58 -2.53 -0.51 0.37 2.03 -2.07 0.32 -4.56 -0.0 -0.95 -1.26 -0.98
Zm00001d051726 (GRMZM2G351636)
- - - - 0.81 - - - - - - 1.02 - 4.58 - 0.09 - - - 3.03 - - - - - - - - - - - - - - - - -
Zm00001d052127 (GRMZM2G331964)
- - - - - - - - - - - 0.73 - 4.97 - -0.11 - - - - - - - - - - - - - - - - 1.66 - - - -
- -6.94 - - -0.95 -3.0 - - - - -5.15 -1.29 - 4.4 -1.11 0.64 -2.08 - -2.09 -4.52 0.44 - - - -0.35 2.76 - -0.74 - - - - -2.61 -7.6 -4.96 -1.3 1.14

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.