Heatmap: Cluster_50 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d002474 (GRMZM2G035685)
-0.71 -2.89 -3.08 - 1.52 - - -0.07 - - - -1.55 -0.73 -0.94 -2.57 1.13 0.36 -0.3 -0.96 -0.97 -3.34 - - -3.26 0.85 - - 1.78 2.87 2.88 0.47 - -2.42 1.74 -2.04 -2.98 -
- - - - - - - - - - - -3.21 - - - -1.17 - - - -0.86 - - - - -2.16 - - -1.76 5.12 - - - - - -2.15 - -1.32
- 1.06 -0.59 - 1.04 1.8 -1.11 - - - - 0.72 - - -1.96 -1.25 - 0.19 -1.08 - - - - - -1.04 - - -0.26 - - -0.2 - -0.23 - 3.34 1.64 3.0
- - - - 1.98 - -1.88 - - - - -4.94 - - - 1.79 - - -1.15 - 1.54 - - - - - - - - - - - -2.43 - 0.88 - 4.58
-1.15 -0.02 2.32 -0.74 0.5 -4.13 -3.5 -0.72 -4.59 -2.51 -0.65 -1.63 -1.82 3.53 -2.7 0.76 - -0.52 -2.42 - -3.05 - -2.55 -1.37 -2.24 -2.71 2.33 0.88 - - -0.28 - -0.86 0.77 -0.98 -1.16 -2.81
- - - - - - - - - - - -0.82 - - - 5.19 - - - - - - - - - - - - - - - - - - - - -
- - - - 3.25 - - - - - - -0.16 - 2.83 - 3.95 - - - 1.57 - - - - - - - - - - - - -0.59 - -1.27 - -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - 2.48 - -0.92 - - - 4.39 - - - - 0.47 -2.26 - - -1.88 - - - - - - - 0.55 - - - 1.93 -0.83 -0.83 -3.08 - 0.67
- - - - - - - - - - - -0.44 - - - 1.02 2.71 - 0.81 - - - - - - 4.24 - - - - - - - - - - 2.83
-4.17 4.67 - - -0.13 - - -3.47 - - - -1.01 - 1.4 - 1.15 - - -1.5 - 1.03 - - - - - -2.02 -3.85 - - -2.58 - -2.49 - - -2.51 0.9
- - -3.2 0.78 0.36 0.96 -3.09 1.89 - - 2.35 -0.99 - - -3.09 1.84 2.88 -2.71 0.44 -1.96 - - - -3.92 -2.02 2.8 - -2.39 - - - - -4.89 - -2.6 0.38 -0.46
- - - - 1.01 - - - - - - -2.34 - - - 4.29 -2.34 - - -1.19 - - - - - 0.68 - 3.43 - - - - 0.54 -0.59 - -5.43 -
- - - - 4.18 - - - - - - 1.85 - - - 2.94 - - - - - - - - - - - - - - - - - - 2.93 - -
- - - - 2.2 - - - - - - -0.16 - - - 4.37 - - - - 3.45 - - - - - - - - - - - - - - - -
- - - - - - -1.33 - - - - -1.86 - - - 0.61 2.57 -1.45 -0.04 1.27 3.67 3.17 - 1.27 -1.43 - - - - - -1.08 - -3.11 - - -4.09 -
- - - - - - - - - - - 2.08 - - - 5.03 - - - - - - - - - - - - - - - - - - - - -
- - - - -6.9 -3.61 - - - - - -5.82 - - - 0.87 2.28 -1.12 -2.06 -3.51 - - 3.13 - - - - - - - - - -3.6 - -1.07 2.47 3.86
- - - - - - - - - - - 1.13 - - - 3.58 3.82 - - - 3.12 - - - - - - - - - - - - - - - -
Zm00001d013650 (GRMZM2G364373)
- - - - - - - - - - - - - - - 1.95 - - - - - - - - - - - - - - - - - - 5.05 - -
- - - - 0.1 - - - - - - -3.1 - 4.51 -3.07 1.23 0.06 - -0.12 - - - - - - - 1.07 1.61 - - - - 0.05 - -0.82 -2.05 0.64
Zm00001d014263 (GRMZM2G088348)
- - - 4.31 -0.08 -2.74 -0.21 1.63 - - -0.2 -2.2 - - -4.33 1.15 -2.96 - 0.05 - -1.1 - - -1.29 -4.73 - - -4.02 - 2.1 -0.36 - -2.39 - -0.55 -5.17 -0.55
Zm00001d014908 (GRMZM2G387471)
- - - - 2.36 - - - - - - -1.49 - - - 4.98 - - - - - - - - - - - - - - - - - - - - -
- - 3.72 - -1.08 - - - - - - -1.63 - - - 3.2 - - 2.62 0.8 1.47 - - - - - - 1.66 - - - - - - - - -
- - 4.08 - 0.93 - - - - - - -0.07 - - - 2.03 - - - - - - - - 1.73 - 3.16 - - - -0.67 - - - - -1.87 -
Zm00001d019999 (GRMZM2G542753)
-4.06 -3.26 -1.53 - 0.59 -1.7 -2.85 1.0 - - -0.71 0.72 -1.1 -1.35 -3.7 2.03 -2.09 -1.46 0.85 -2.52 1.84 -1.14 - -3.64 0.8 1.7 1.26 -0.66 - 2.71 - - 0.07 -3.71 0.1 -1.36 0.51
- - - - -0.11 - - - - - - 1.24 - - - 4.14 - - 3.15 - 0.45 - - - - - - - - - - - - - - -1.06 2.41
Zm00001d020096 (GRMZM2G116939)
- - - - 2.2 2.79 -0.82 -1.88 - - - -5.58 - - - 3.76 -1.85 - - - -4.2 1.22 - - - - - 1.35 - 0.57 0.48 - -4.99 -3.84 -2.65 -2.26 1.32
- - - - 3.16 - - - - - - -0.64 - - - 2.45 - - - -0.66 - - - - 1.04 - - 1.76 - - 3.52 - - - 0.9 -1.11 1.07
- - - - 1.28 - - - - - - - - - - 0.86 - - - - - - - 3.06 2.05 - - - - - - - - - 2.08 1.29 3.76
- 1.37 - 3.64 1.93 - - - - - - -0.29 - - - 1.84 1.86 2.23 0.19 - - - - - - - - - - - - - 1.49 -0.17 -0.99 -3.4 -
-3.71 - - - -0.82 -3.12 -3.36 - - - 1.32 -1.91 - 1.35 -4.83 0.96 0.13 -3.39 -1.65 -2.73 -0.8 2.89 - -5.37 0.64 - -1.42 2.08 - 0.94 -1.33 1.1 2.13 1.74 -1.89 -2.57 -1.34
Zm00001d025260 (GRMZM2G103725)
- - - - 0.97 -3.27 - - - - 2.0 1.24 -1.3 4.04 - 2.51 - - 0.0 -3.51 - - - - - - - - 2.29 - - - -5.65 - -3.69 -7.06 -
Zm00001d025295 (GRMZM2G424261)
- 4.85 0.63 - -1.9 - - - - - - -9.44 - - - -2.2 0.94 - -3.12 -3.29 - - - -0.72 0.01 - - - - 1.16 - - - - -2.81 -5.97 -
Zm00001d025552 (GRMZM2G453978)
- - - - -0.9 1.98 - - - - - -1.5 - - - 0.12 - - - - - 4.6 - - 1.97 - - - - - - - - - - 1.51 -
- - - - 3.86 - - - - - - - - - - 2.01 - - - - - - - - 4.2 - - - - - - - - - - - -
- - - - -0.58 0.46 -0.56 - - - - -2.19 - - - 2.26 - - 3.12 -0.26 3.73 - - - - - - -2.86 - - 0.54 - 1.58 - -3.2 -0.9 0.28
Zm00001d030183 (GRMZM2G079774)
- - - - 0.63 2.51 2.02 0.72 - - -2.59 1.66 - - -1.04 1.04 -3.56 - -2.14 - -3.95 - - -4.5 -0.03 1.34 - -0.07 - 0.46 -3.71 - -4.31 - 2.41 1.3 2.0
- - - - 0.77 - -1.77 - - - - -3.11 - 1.42 -1.05 0.89 -0.02 - -0.03 -2.38 3.04 - - - - - -0.01 1.21 - - - 2.76 2.39 -0.49 - -2.93 1.75
Zm00001d031391 (GRMZM2G037493)
- - - - 0.42 - - 0.01 - - - -0.45 1.49 - 0.41 1.16 -0.54 - - - 2.9 1.45 - 1.12 -1.51 - - 0.49 - - 2.43 - 0.74 - -3.62 -0.6 2.29
- - - - 0.94 - -1.33 1.97 - - - 0.17 - - - 2.73 - - 4.32 -0.86 - - - - - - - - - - - - 1.33 - - - -
Zm00001d032484 (GRMZM2G063798)
- - - - 2.1 -2.62 0.32 3.18 - - - -2.08 - -0.99 - 2.94 - - 2.82 -0.69 -3.74 - - - -1.55 - - -5.88 - - - - 1.61 -6.03 -2.29 - 1.3
- - - - 2.52 - - - - - 3.95 - - - - 0.25 - 2.5 -0.52 -0.94 - - - - - - - 2.53 - - - - 1.02 - - - -
- - - - - - - - - - - - - - - 4.18 - - - 4.24 - - - - - - - - - - - - - - - - -
Zm00001d034083 (GRMZM2G007997)
- - - - -0.89 - - - - 4.08 - -0.72 - 3.66 - 1.39 - - - - - - - - - - - - - - - - - - - 1.87 -
Zm00001d034231 (GRMZM2G313536)
-2.01 - 0.88 - 1.95 - - - - - 0.55 -0.3 - - -2.89 3.24 - - 0.26 -2.44 0.68 - - -0.82 - 0.52 - -4.09 3.54 - -2.76 - -0.22 - -2.16 -1.64 -0.12
- - - - 2.57 - 1.57 - - - - 0.39 - - - 0.98 - - 1.37 - - - 4.48 - - - - - - - - - - - - - -
-2.92 0.03 -1.37 -1.09 0.64 -0.8 -1.26 1.77 -2.08 -0.82 2.18 -0.36 -2.2 - -2.19 2.15 2.65 -4.15 0.78 -1.18 - - -0.93 0.15 -1.78 1.35 -1.09 -1.1 - -1.13 -1.75 - -3.42 -0.82 -7.31 0.49 0.43
Zm00001d034776 (GRMZM2G040369)
1.49 4.02 -1.08 - -0.43 - -4.05 -1.16 -1.25 -3.41 - -1.75 0.22 - -1.61 -1.78 2.24 -2.92 -0.76 - -0.92 0.07 -2.1 1.24 -1.15 - - -1.0 - - 0.71 - -1.33 -1.71 -1.05 -2.13 -4.03
- - - - - - - - - - - - - - - 3.51 - - 4.64 - - - - - - - - - - - - - - - -0.92 -1.98 -
- - - - - - - - - - - - - - - 4.87 - - - 0.88 - - - - - - - 1.09 - - - - -0.18 1.52 - - -
- - - - -0.2 - - - - - 1.32 -1.23 - - -4.23 -0.6 -0.43 0.31 -3.93 -3.39 -2.57 0.65 4.42 -1.52 -1.66 - - - - 1.99 -1.68 - -2.43 - 0.14 -1.53 -0.82
-2.24 - - - 1.64 - - - - - - -0.11 - - -0.63 2.7 - - 1.82 1.93 - - - - 1.73 2.31 - -4.27 - - -1.81 - 1.31 - -4.6 -0.52 2.67
-0.33 - - - 0.0 -0.03 - - - - - -2.26 - - - -0.29 0.6 - -0.14 - -0.75 - - - - - - -1.31 - - - - - - 4.87 -1.13 -
Zm00001d040332 (GRMZM2G701441)
- - - - - - - - - - - - - - - 2.02 - - - - - - - - - - - 4.83 - - - - 1.03 1.29 - - -
- - - - 1.63 4.43 - - - - - -1.57 - - - 1.1 - - -0.09 - - - - - - - - - - - - - - - - - 3.17
- - - - 2.64 4.39 - - - 1.22 - -1.78 - - - 2.33 0.85 - - - - - - - - - - - - - - - - - -1.51 - -
- - - - 3.26 - - - - - - 0.48 - - - 4.22 - - 2.88 - - - - - - - - - - - - - - - - - -
- - - - 0.95 - - - - - - - - - - 0.45 - - - - - - - - - - - - 5.07 - - - - - - - -
- - - - -0.08 -2.29 - - - - 2.14 0.32 - 3.21 -3.12 2.92 - - 1.75 2.2 -2.52 - - - -2.3 - - 1.89 - - - - -2.75 -0.72 - -3.33 -1.4
- - - - 1.64 - - - - - - - - - - 5.08 - - - - - - - - - - - - - - - - - - - - -
- - - - -5.84 2.51 1.49 2.85 0.66 -0.17 - 0.76 - - -0.13 0.71 - - - - -2.68 - 3.51 - - - - - - - - - -3.77 - -1.95 0.69 0.11
- - - - -3.07 0.41 - - - - - -1.47 - - - 3.89 - 3.99 - -1.65 0.02 - - - - - - -1.06 - - - - -1.15 - -2.38 -0.82 0.45
Zm00001d044743 (GRMZM2G412137)
- - - - -0.19 - - - - - - -4.94 - - - -0.35 - - - - - - - - - - - - 5.12 - - - - - - - -1.13
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
Zm00001d045356 (GRMZM2G124616)
-2.09 -0.33 - - 1.2 4.2 -1.26 - - - - -2.65 - - - 2.13 - - 0.0 - -2.01 - - -3.26 -3.63 - - -0.22 - - - - -0.73 -3.76 0.82 -2.84 2.43
Zm00001d045909 (GRMZM2G475673)
0.09 - - - 0.68 0.38 - - - - - -3.54 - - - 3.49 1.6 - - -1.34 - 2.68 - 0.86 -0.51 - - - - - - - - - 1.77 0.4 2.21
Zm00001d046288 (GRMZM2G026744)
- - - -1.18 1.54 -1.34 -1.89 - - -4.82 1.21 0.43 - - -0.08 -0.81 -2.41 - - 3.55 -4.66 - 2.36 - - -4.12 - - - - -2.33 - -6.5 -2.76 -1.62 -0.37 3.2
Zm00001d046426 (GRMZM2G428740)
- - - - 1.27 0.69 - - - - 1.24 0.55 - - -1.61 2.44 -0.62 - 1.78 -4.0 -2.26 3.06 - -3.45 -0.15 2.43 - -2.55 - -1.56 -5.06 - 0.74 - -0.61 0.3 -2.28
- - - - 1.28 -1.05 - - - - 1.28 0.2 - -3.17 -3.52 1.85 -0.19 - 1.11 -5.4 -3.32 3.05 - - 0.7 3.32 - -0.39 - - -2.45 - 0.21 - -0.78 -0.24 -3.58
- - - - 0.51 - - - - - - - - - - 2.07 - - - - -0.66 - - 1.67 -0.4 4.42 - 1.14 - - - - 0.23 - - 1.0 -
Zm00001d047295 (GRMZM5G842555)
- 0.52 - - -0.63 - - - - - - -2.77 2.68 - -3.11 -0.16 2.9 - -0.15 - - - - - -0.2 - - - - - 0.15 - 0.16 -1.08 3.93 -3.08 -
- 5.16 - - - - - - - - - -2.68 - - - 0.1 - - - - - - - - - - - - - - - - - - - - -
- 5.04 0.59 - -3.96 0.89 - - - - - -1.0 - - - -4.61 - - -3.07 - - - - - - - - - - - - - - - - - -
Zm00001d050231 (GRMZM2G434549)
- -1.72 -1.91 - -1.18 - - -2.03 - - -0.17 1.66 0.45 -0.81 0.15 0.17 -0.06 -1.51 1.05 - -1.5 - - -1.12 -2.44 - - 0.26 - 3.25 2.77 - - -3.0 -1.81 -0.05 2.08
- - - - - - - - - - - - - - -0.81 0.32 - 2.5 -0.51 0.06 0.86 - - - 1.89 - - 1.14 - - - - 1.57 3.3 - 0.18 2.61
- -0.77 - - -2.19 -0.94 0.25 - - - - -2.61 - - - 1.8 0.18 - 0.72 - -0.55 - - -0.94 - - - - - - - - -2.16 - 4.3 -1.68 2.73
- 5.18 - - - - - - - - - - - - - -1.88 - - -1.42 - - - - - - - - - - - - - - - - - -
- - - - 1.65 - 2.75 - - - - 2.29 - - - 3.48 - 2.15 -1.06 1.09 - - - - - - - - - - - - 2.03 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.