Heatmap: Cluster_40 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - 3.35 - 2.19 2.54 - - - 1.27 - - - 1.37 - - - - 1.28 - - - 3.18 - - - - - - - - - - - -
Zm00001d002994 (GRMZM2G306793)
- - - - -5.4 - - - - - - -2.04 - - - -4.91 -1.89 - - - - - 3.96 - - - - - 4.15 1.53 - - - - -4.76 - -2.1
Zm00001d004134 (GRMZM2G471395)
- - - - 0.43 - 0.05 - - - 0.45 -0.93 - - -3.86 -2.71 - -0.55 -1.76 -0.38 -1.59 - - 0.01 - 0.77 - - 4.79 - - - - - - -4.34 -
Zm00001d004197 (GRMZM2G057136)
- - - - -0.06 -1.82 -1.54 - -0.26 - -0.1 -2.12 - - -3.55 -0.5 - -1.87 -3.86 - - - 3.91 - - - - 1.46 3.11 - - - 1.87 -0.81 -1.52 -1.26 -0.18
Zm00001d004355 (GRMZM2G019742)
- - - - 4.94 - - - - - - 0.52 - - - -1.83 - - - - - - - - - - - 1.57 - - - - 0.62 - - - -
Zm00001d004560 (GRMZM2G165613)
-4.09 -4.05 -5.28 - 1.94 -4.52 0.5 -1.25 -2.93 -3.63 -1.25 -0.84 - -4.3 -3.26 -0.87 -1.25 -2.22 -0.77 -6.52 -1.48 - 0.43 -2.2 -3.71 -2.69 - 4.12 - 2.89 -2.77 - -2.34 -4.47 -3.04 -2.46 -1.38
- - - 1.42 - - - - - - - -2.91 - - - -3.12 - - - - - - 3.72 - - - - -3.49 3.91 - - 2.07 0.19 -1.22 - - -
- - -0.3 0.79 4.06 -3.7 -6.65 -6.01 - -9.33 -5.18 -4.64 - 3.01 -7.92 -0.1 - -9.7 -4.91 -10.05 -1.0 0.55 - - 1.55 -3.71 -2.88 0.68 -3.15 - - - -1.15 -10.28 -3.26 -4.33 0.26
Zm00001d005913 (GRMZM2G168196)
- - 0.16 - 3.44 - - - - - - -2.22 - - -0.69 1.97 - - 1.02 1.63 -2.53 - - -1.48 -1.0 - - 2.1 - - - - 2.76 1.03 -2.1 -1.28 -1.6
Zm00001d005974 (GRMZM2G703293)
- - - - 5.0 - - - - - - 1.15 - - -2.04 -2.54 - - - -0.08 -1.81 - - - - - - - - - - - -0.71 - - -1.23 -
- -2.67 - - -4.71 - -2.59 - - - - -4.55 - - - -5.53 -2.86 0.9 -4.69 2.73 - - - -4.55 -3.08 -1.26 - - 4.76 - - - - -3.61 - -3.85 -
Zm00001d007015 (GRMZM2G053833)
-1.6 -6.32 -2.22 -0.56 -0.73 -0.61 -2.82 -1.02 -3.56 -3.08 -1.08 -1.15 -5.32 -0.62 -2.64 -2.74 -7.35 -2.99 -2.03 - -5.88 - 3.17 -5.01 -3.44 -1.51 -2.89 -0.74 3.99 -2.77 -4.08 1.98 -4.62 -2.53 -1.88 -0.91 -4.46
Zm00001d007451 (GRMZM2G056977)
- - - - 1.37 - - - - - - -4.91 - - - -2.06 - - - -1.84 - - 4.92 - - - - 1.03 - - - - -1.54 -0.33 - - -1.14
Zm00001d007899 (GRMZM2G322279)
- - - - 0.94 - - - - - - -0.84 - - -0.38 -3.97 - - -0.82 -0.69 - - - - - - - -2.73 4.97 - -1.33 - -2.07 - - -1.42 -
- - - - 3.38 - - - - - - -1.57 - - - 1.56 2.64 - 2.19 -0.26 - - - - - - - - - - - - - - - 3.45 -0.48
Zm00001d011498 (GRMZM5G881088)
-3.75 - - 0.48 3.69 - -2.34 -1.47 - - 2.41 -0.85 - - -1.39 -0.01 - - -2.01 -3.97 - - -1.3 - - -1.0 -0.6 2.12 - - 0.98 - 0.47 1.42 -5.9 -0.11 0.66
Zm00001d014136 (GRMZM2G067591)
- - - - 4.65 -1.32 - - - - - 0.08 - - -2.0 -1.03 - - - -2.37 - - - - - - - -1.87 - - - - - - 1.58 2.64 -
- - - - 1.87 1.53 -1.03 - - - -1.06 -0.63 - - -1.96 1.21 0.8 0.99 -0.96 3.51 1.81 - - 0.93 -3.02 - - -2.85 - - -2.87 - -3.23 - -1.62 0.42 1.61
Zm00001d015068 (GRMZM2G146209)
- - - - 4.53 - - - - - - - - - - - - - - 3.53 - - - - - - - - - - - - - - - 1.27 -
Zm00001d015079 (GRMZM2G382009)
- - - - -0.19 - - - - - - - - - - -1.22 - - - -1.7 - - 5.09 - - - - -0.72 - - - - -0.51 - - -3.05 -
- - - - 4.32 - - - - - - - - - 0.77 0.4 - - - - 0.56 - - - 2.19 - - -0.23 - - - - -0.24 - 0.16 2.36 -
Zm00001d016433 (GRMZM2G151344)
- - - 0.3 -3.15 -1.34 - - - - -1.51 -7.4 - - - -2.22 - - -2.79 -2.44 - -1.13 3.96 - -3.44 - - -3.96 4.16 - - - -2.45 - - -3.29 -
Zm00001d016632 (GRMZM2G320287)
- - -1.74 - 4.47 -0.08 - - - - - -0.46 - - - -2.54 - 0.86 2.79 - -0.71 - -0.24 - - - - -3.34 - - -0.84 - -4.15 -3.88 - 0.57 -2.16
- - - - 3.98 - - - - - - 1.12 - - - 2.8 - - - 2.69 - - - - - - - - - - - - - 2.49 - - -
- - - - -1.6 -1.52 -1.97 -1.61 - - - -2.51 - - -1.53 -1.94 -1.43 -0.53 -0.56 -2.28 -0.29 1.42 3.27 1.09 -0.72 - - -1.26 3.39 1.81 -1.42 0.85 -4.85 - -1.74 -2.2 -
Zm00001d018748 (GRMZM2G450866)
-7.15 -8.32 -2.48 1.27 4.84 - - -7.95 - - - -9.31 - -7.54 -4.27 -3.31 - - -8.43 -5.61 - - - - -6.41 - - -10.29 - - -6.24 - -6.95 -10.02 2.03 -1.26 0.09
Zm00001d018877 (GRMZM2G463441)
- - - - 4.54 - - - - - - -2.18 - - - -2.28 - - -1.83 1.05 -2.25 - - - -1.14 - - 0.95 - - 2.71 - 0.29 -1.01 - -2.51 -
Zm00001d018879 (GRMZM2G102693)
- - - - 2.51 - - - - - - -0.1 - - 0.57 1.06 4.07 - - - 1.68 - - - - - - 2.2 - - - - - - -0.15 0.44 -
Zm00001d019064 (GRMZM2G448583)
- - - - 3.6 - - - - - - -1.5 - 3.21 - -1.73 - - - 3.62 - - - - - - - - - - - - 0.62 0.29 - - -
Zm00001d019066 (GRMZM5G830839)
- - - - 4.97 - - - - - - -1.8 - - - -3.71 - - - -1.66 - - - - - 2.3 - - - - - - - - - - -
Zm00001d020750 (GRMZM2G405708)
- - - - 4.4 - - - - - - 2.48 - - - 2.25 - - - - - - - 2.24 - - - - - - - - - - -0.34 - -
Zm00001d020857 (GRMZM2G404929)
- - - - 4.32 - -0.18 - - - - 0.3 - - -1.01 3.15 - - -2.37 - -1.02 - - - 1.03 - - -2.26 - - - - - - - - 1.4
- - - - 4.15 - - - - - - 3.54 - - - -1.35 - - - - - - - - 2.51 - - - - - - - - - - 0.65 -
- - - 3.81 2.72 - -0.91 0.4 - - - -1.18 - - -0.75 -0.68 1.19 -1.16 -3.22 -0.58 -0.07 - - -0.81 0.78 - - -0.27 - - -0.11 - - 0.59 - 0.84 0.07
Zm00001d022146 (GRMZM2G062651)
- - - - -6.11 - - - -1.13 -0.69 - - - - -0.06 -9.5 - - 2.43 -4.81 - - 3.16 - - - - - 4.35 - - - - - -4.35 -2.61 -
Zm00001d024694 (GRMZM2G123963)
- - - - 3.77 - 0.7 - - - - -0.52 - - -0.24 -0.06 - - - - - - 2.6 - - - 2.31 - - - - - -0.93 - 1.77 2.1 -
Zm00001d026491 (GRMZM2G058588)
- - - - -7.38 - -4.45 - - - - -3.45 - - -0.63 -2.61 1.83 2.74 -3.19 - -2.39 -0.46 3.31 - -0.64 - - - 3.5 - - - - - -0.1 -1.77 0.73
- - - - - - - - - - - -9.97 - - - -7.18 - - 2.83 - -4.1 - - - - - - -5.27 4.89 - - - -3.61 - - - -
- - - - - - - - - - - -3.7 - - - - - - - - - - 2.99 - - 0.75 - - 4.77 - - - - - -3.94 - -
Zm00001d030696 (GRMZM5G847387)
- - -2.97 0.49 -0.39 - - - -2.38 - -1.37 -5.43 - 1.5 - -2.96 - - - -3.1 -2.48 - 3.79 - - - - -5.4 3.98 - -1.34 - - -0.29 - -4.34 -
- - - - 2.36 - - - - - - 2.65 - - - 1.4 - - 4.39 - 0.97 - - - - - - - - - - - - - - - -
- - - - 4.25 - - - - - - - - - - 1.57 - - - - - - - - - - - - - - - - - - - 3.9 -
- - - - 1.97 - - - - - - 1.67 - - - -2.7 - - - - - - - - - - - - - - - - - - - - 4.89
- - - - 3.94 - - - - - - 3.24 - - - 0.4 - - - 3.45 - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -6.56 - - - - - - 3.49 - - - - - 4.69 - - - - - - - -
- - - - - - - - - - - -10.7 - - - - - -0.42 -1.37 -1.9 - - 2.38 - - - - -5.8 4.9 - - - - - - - -1.05
Zm00001d037409 (GRMZM2G405498)
- - - - 5.14 - - - - - - -2.05 - - - -0.54 - - - -2.36 - - - - - - - -2.82 - - - - - -1.42 - - -
Zm00001d037411 (GRMZM2G174129)
- - - - 1.6 0.6 1.96 3.2 1.6 1.05 - 1.93 - - 0.01 -4.12 - -1.85 -3.27 -4.01 -2.75 - - -2.25 -2.99 2.47 - -5.14 - - - - -4.8 - - 0.68 0.39
Zm00001d037567 (GRMZM2G037323)
- - - - 0.07 - - - - - - -2.4 - - - -0.6 - - - -0.68 - - 5.11 - - - - - - - - - - - - - -
- 0.23 - - 2.8 - - - - - - -3.56 - - -2.03 -2.28 - - - 0.5 - - - 3.29 - - - - - - - - -2.53 - 3.47 - 2.56
Zm00001d039233 (GRMZM2G455926)
- - - 4.85 1.34 - - - - - - -2.58 - - - -2.05 - - 0.55 - - - - - - - - - - - - - - - - - 1.9
Zm00001d040620 (GRMZM2G102014)
- - - - 2.35 4.26 1.46 - 2.31 - - -1.63 - - 1.48 -4.7 - - 0.54 - - - - - - - - - - - - - -1.42 - - - -
Zm00001d041086 (GRMZM2G120943)
- - - - 2.6 - - - - - - -1.43 - - - -6.77 - - - - - - - - - - - - 4.93 - - - - - - - -
- - - - - - - - - - - -2.51 - - - -4.75 - - - - - - 3.34 - - 1.83 - - 4.53 - - - - - - - -
Zm00001d044013 (GRMZM2G408436)
- - - - - - - - - - - -4.72 - - - -4.57 - -1.98 0.89 -0.8 - - 3.38 - - - - -3.85 4.57 - - - - - - -4.88 -
Zm00001d045842 (GRMZM5G868431)
- - - - 2.88 1.7 1.56 - 1.43 1.62 - 1.68 - 3.06 - 1.63 - - - -0.19 - - - - - - - -0.51 - - - - - - - - 0.54
Zm00001d045855 (GRMZM2G439459)
- - - - 5.08 - - - - - - 1.42 - - - -1.14 - - - - - - - - - - - - - - - - - - - - -
Zm00001d046281 (GRMZM2G084947)
-6.7 - 1.33 2.97 2.27 1.06 0.29 0.39 -1.62 -3.75 -0.16 -0.23 -2.16 0.87 -0.59 0.43 -3.81 -0.86 -4.61 -9.48 -2.25 -0.92 0.94 -4.34 0.17 0.64 -2.4 -2.02 -2.33 - -8.91 -4.32 -6.77 -2.23 -2.15 0.87 0.96
- - - - 3.61 3.43 - - - 1.53 - 2.66 - - - -1.35 - - 1.55 - - - - - - - - - - - - - - - - 0.56 -
Zm00001d047161 (GRMZM2G019430)
- - - - -5.53 - -2.11 - - - - -3.77 - - - -6.97 - 1.42 - -1.75 - - 3.97 - - - - - 4.16 - - - - - -4.75 -3.83 -
Zm00001d049578 (GRMZM2G000471)
- - 0.29 - -0.33 - - - - - - - - - - -2.4 - -0.92 -5.38 2.45 - 0.21 2.98 - - - - -4.21 4.17 0.55 - - - - -3.1 - -3.08
- - - - - - - - - - - -3.99 - - - -7.13 - - - - - - 4.1 - - - - - 4.3 - - - - - - -3.71 -
Zm00001d050625 (GRMZM2G468929)
- - - - 3.54 - - - - - - -1.98 - - - -2.88 - - - 2.5 - - - - - - - 0.09 - - 1.93 - 2.92 2.25 -0.2 0.32 -
Zm00001d053689 (GRMZM2G105892)
-4.14 - 1.36 2.12 2.22 -0.32 -0.95 -3.26 -2.07 -2.76 - -2.28 - -1.22 -2.32 -0.42 -4.18 1.32 2.15 -6.43 -5.24 -1.65 -1.91 - -1.77 -2.22 -0.88 0.19 - 0.53 -1.69 2.41 -2.41 -0.56 -3.03 0.18 1.58
- - - - 4.59 - - - - - - - - - - -6.38 - - -1.5 -2.18 - - - 2.36 - - - 2.73 - - - - - -0.93 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.