Heatmap: Cluster_57 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
- - - - 4.01 - - - - - - 3.92 2.11 1.99 3.47 - - - - - - - - - - -2.86 - - - - - 0.91 - - - - - - - 0.54 - 0.94 - - - - - - - - - - - - - -
- -2.73 -1.51 -1.22 1.0 0.33 - -1.94 -1.98 0.31 -1.32 3.66 2.64 2.5 2.45 -2.83 3.49 - 0.72 -0.77 -2.52 - - - -2.69 -0.6 -2.53 - - -1.09 -3.41 - - - -3.32 -3.68 - -2.75 -3.78 - -2.01 - -3.94 - -3.6 -3.6 -1.43 -3.27 -3.35 -0.37 -1.66 -0.97 - -1.62 -0.15 -4.04
- - - -3.48 -3.0 -4.61 - - -8.33 2.19 -4.91 3.72 -2.62 -2.21 2.47 - 4.65 - 1.82 - - - - - - -4.65 - -3.93 - - -4.52 - - -4.7 -1.4 -4.67 -2.53 - -4.71 -2.96 - -2.94 - - - - - - - -0.8 -2.28 -1.25 -2.39 -1.18 -0.74 -6.22
- - 1.45 1.6 2.07 -3.9 2.69 - - -1.81 -1.31 3.26 -1.89 -2.03 1.99 0.39 4.47 -2.28 -1.78 - - - - - - -4.82 - - - - - - - - -2.9 - -2.13 -3.21 - -1.81 - - - - - -3.18 - - - - - - - - - -
- - - -1.36 0.94 -3.18 - -3.29 - -5.06 -3.47 3.08 -1.22 1.29 1.59 -1.11 4.68 -2.56 - 0.24 - - - - 1.45 -1.97 -2.39 1.59 1.37 1.27 - - - - - - - - - - - - - - - - -2.3 - - - - -2.42 - - - -
-3.26 -3.37 1.94 2.24 1.68 -0.26 1.41 -4.07 - -1.55 -2.32 2.71 2.07 1.46 1.92 2.08 3.16 1.87 -2.32 -4.22 - - - - -3.34 -3.46 - - - - -2.61 -0.75 -1.22 -0.39 -1.7 -1.73 -2.4 -2.79 -1.18 -0.58 -2.21 -4.28 - - - - -2.08 -6.5 -5.83 - -3.15 -1.43 -4.34 -2.79 -2.54 -4.72
- - 1.45 1.6 2.07 -3.9 2.69 - - -1.81 -1.31 3.26 -1.89 -2.03 1.99 0.39 4.47 -2.28 -1.78 - - - - - - -4.82 - - - - - - - - -2.9 - -2.13 -3.21 - -1.81 - - - - - -3.18 - - - - - - - - - -
- - - - 3.57 - - - - 1.51 - 3.26 - - 3.88 - - - 3.1 - - - - - - - - - - - - - - - - - - - - - - - - 3.07 - - - - - - - - - - - -
-0.71 -3.24 -0.31 -1.71 2.02 2.01 3.52 -2.4 -0.59 -2.16 -4.12 0.05 0.25 0.61 -0.86 0.69 3.74 -0.62 -2.14 -0.79 -1.75 -1.28 0.97 -1.87 -1.49 -2.49 -0.5 -0.04 -0.32 0.29 -2.45 -2.76 -4.61 -4.08 -3.56 -2.69 -4.22 -2.0 -2.83 - -2.48 - -2.78 - -2.03 -3.94 0.08 -2.66 -2.56 -2.01 -1.34 -0.96 -1.38 -2.29 -0.9 -3.8
- - 1.45 1.6 2.07 -3.9 2.69 - - -1.81 -1.31 3.26 -1.89 -2.03 1.99 0.39 4.47 -2.28 -1.78 - - - - - - -4.82 - - - - - - - - -2.9 - -2.13 -3.21 - -1.81 - - - - - -3.18 - - - - - - - - - -
- -5.24 -1.65 -1.15 -2.21 -0.67 -5.05 -5.66 -9.32 2.25 -4.04 3.7 -3.48 -2.69 2.44 -2.34 4.76 - 1.42 - - - - - - -7.0 - - - - -4.3 -5.18 -4.3 - -4.27 -2.46 - -4.71 -3.64 -3.29 -3.52 -3.42 - -4.83 - - - -8.89 - - -6.08 -6.15 - - -4.63 -5.81
- - 2.43 2.67 2.84 1.17 2.4 - -0.1 - 0.09 -0.25 1.13 1.06 1.01 2.79 - 2.46 - - - - - - - -4.32 - - - - - - - - - - - - - - - - -0.8 -1.56 1.67 - - -0.77 0.01 - - - -2.78 - - 1.11
- - - -2.7 - - - - -6.09 -0.15 0.86 3.41 0.4 1.18 2.05 - 4.88 - -0.41 - - - - - - -2.43 - - - - - - - - -1.56 -1.87 -3.2 -2.98 - - - - - - - -2.8 - - -3.6 -1.45 -0.48 -2.69 -0.92 -2.56 0.25 -2.33
-5.22 - -3.5 -2.38 -1.61 -1.84 -5.13 - - 1.67 -5.0 3.32 -2.73 -1.91 2.14 - 5.17 - -2.77 - - - - - -5.29 -3.63 - - - - -5.39 -5.15 - -5.12 -6.02 -5.1 -4.46 - -4.71 -2.46 -6.24 -3.71 - - -6.2 - - - -8.76 -3.94 -5.83 - -6.14 - -4.03 -6.52
-0.26 - 3.23 1.83 2.58 -1.95 - 1.0 - -1.18 - 3.89 0.71 0.63 2.73 - 1.0 - -2.44 - - 0.28 - - - 1.78 - - - - - - - - - - - - - - - - - - - -0.02 0.13 - - - - - - - - -
- - - - 3.88 - - - 1.3 -1.25 - 3.92 - - 1.73 1.05 - 3.77 -1.1 - 1.36 - - - - -3.63 - - - - - - 0.28 - - - - - - - - - - - - - - - - - - - - - - -
- - - - 3.93 - 5.11 - - 0.44 - 1.89 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 0.0 2.94 1.78 - - -1.62 -1.06 - 3.83 1.73 1.68 2.58 - - 1.39 2.25 - - - - - - -3.62 - 0.59 0.53 - - - - - - - - - - - -0.55 -0.14 - - -0.48 - 0.66 -2.58 -1.09 - 0.6 - - - -7.59 -
-0.41 -0.52 -0.3 -0.88 2.58 - - -0.27 -2.3 -2.91 1.75 2.45 2.95 2.11 2.78 - - -0.49 -1.13 - - -1.37 -0.32 - -0.49 0.02 - - - - -2.02 - - -1.32 - - - - - -1.05 - - - -2.36 - -0.28 -0.23 -0.59 -0.23 0.32 -1.24 0.2 0.56 -0.01 1.05 1.24
- - 1.45 1.6 2.07 -3.9 2.69 - - -1.81 -1.31 3.26 -1.89 -2.03 1.99 0.39 4.47 -2.28 -1.78 - - - - - - -4.82 - - - - - - - - -2.9 - -2.13 -3.21 - -1.81 - - - - - -3.18 - - - - - - - - - -
- - 1.76 2.28 4.14 1.96 - - - -0.93 - 2.92 3.93 - - 1.44 - - - - - - - - - -2.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 4.49 - - - - 0.44 - - 4.23 3.12 1.79 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.41
- - -0.75 - 2.24 0.25 - - - - - 3.77 1.42 2.07 1.57 - 4.48 1.64 - - - - - - - -3.9 - - - - - - -0.84 - - - - - - - - - - - - - - - - - - - - - - -
- -3.43 -1.41 -0.15 2.27 1.69 3.55 -5.13 -6.22 -1.39 -2.78 0.88 -0.88 -0.29 -1.07 2.31 4.08 0.35 -1.3 - -4.23 -5.24 - - -2.4 -3.79 - -4.35 - - -6.13 -4.23 - - - - - -3.8 -3.16 - -5.35 -5.34 -5.43 - -5.31 - - -7.51 -5.52 -0.11 0.07 0.13 -0.14 -1.36 0.98 -5.75
- - 1.15 - 3.56 2.12 2.7 - -2.18 -0.43 - 1.89 0.26 4.18 2.22 - - - -1.14 - - - - - - -3.48 - - - - - - - - - - - - - - - - - - - - - - - - -0.03 0.01 - - - -
- - - - 4.19 - - - - 1.06 - 2.94 - - - - - - 2.06 - - - - - 4.56 -2.77 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 0.4 - -1.96 2.19 2.78 2.33 - -3.14 - - 3.1 1.03 1.44 2.53 1.71 3.87 -1.16 - - - - - - - -5.59 - - - - - - - - - - - - - - - - -3.15 - - - - - - - - -2.1 - - - -
-0.4 -1.58 -1.15 -0.24 -0.49 -0.99 -0.59 -1.16 -0.25 0.1 -1.45 1.17 1.19 1.16 1.22 -0.21 2.92 -0.16 0.07 -0.56 -0.44 -1.05 -0.3 -1.27 -1.13 -0.25 -0.62 -0.61 -1.05 -0.84 -0.26 -0.43 -0.13 -0.25 -0.32 -0.27 -0.32 -0.34 -0.23 -0.31 0.11 -0.73 0.08 -0.18 -0.01 -0.83 -0.58 -1.11 -0.94 -0.14 0.42 0.46 -0.04 -0.27 0.38 -0.07
-0.2 0.26 -0.46 0.18 0.19 0.04 -0.75 -0.03 -0.03 0.65 1.06 0.61 1.05 0.83 0.49 -0.67 2.45 -0.43 0.6 -0.83 -0.33 -0.64 -0.94 -0.74 -0.39 -0.49 -0.72 -0.91 -0.74 -0.92 -0.26 -0.45 -0.3 -0.31 -0.64 -0.28 -0.41 -0.57 -0.54 -0.47 -0.02 -0.55 0.09 -0.32 -0.25 -0.2 -0.4 -0.37 -0.32 -0.04 -0.03 -0.06 -0.19 -0.28 0.04 -0.01
-0.19 -2.84 -0.0 1.65 -1.96 -0.1 -0.37 2.89 -0.04 -0.46 -2.77 2.29 1.12 2.01 3.17 -2.95 3.59 -4.04 -0.07 - -0.19 -2.9 -1.12 - -3.29 -0.38 - -4.56 - -5.6 -2.6 -2.94 -2.81 -3.75 -2.42 -2.92 -3.99 -3.06 -2.92 -2.51 -2.49 -4.06 -1.24 -0.84 -2.35 -2.7 -1.55 -2.39 -2.45 -6.65 - - - - - -1.79
-1.46 -3.16 0.23 0.06 -0.19 -0.37 0.03 1.78 -2.34 0.32 -1.79 2.61 1.77 1.82 1.96 - 3.41 - 1.19 -4.01 0.95 0.09 -0.15 -1.49 -1.54 -2.72 - - -2.2 -3.11 -3.47 - - - - -4.18 - -2.63 - - -3.93 - -0.81 -1.08 0.79 1.17 -0.28 - -3.79 -0.7 -0.67 -0.54 -0.54 -1.11 -1.33 -0.58
-3.45 -4.05 -0.56 1.89 -0.83 0.08 1.7 0.35 -1.74 0.97 -1.6 -0.26 2.02 1.8 0.42 2.17 4.33 2.69 -1.61 -4.35 -0.64 -4.63 -4.58 -4.28 -4.75 -6.94 - - -5.41 - -6.4 - -4.97 -5.94 -6.22 -7.02 -6.92 -5.39 -6.02 - -6.39 -7.27 -4.14 -8.2 -6.64 -6.03 -3.27 -5.25 -4.01 -6.4 -2.67 -6.24 -5.29 -6.1 -3.42 -5.52
- -3.75 -2.2 -1.37 0.41 1.11 0.4 -3.96 -5.42 -0.5 -0.47 3.33 1.55 2.34 2.02 0.36 3.97 0.37 -0.63 -3.28 - -5.6 - -4.66 -3.71 -2.89 -2.23 - -3.79 -2.11 -3.55 -5.63 -3.46 -3.77 -5.28 - -4.89 -4.22 -2.49 -2.23 -3.93 -3.73 -4.59 -4.57 -3.44 -3.51 -4.46 - -5.54 0.11 -0.27 -0.16 -0.93 -0.2 0.71 -5.11
- 0.44 - 0.78 1.04 -1.15 1.44 1.63 -3.41 - -0.49 2.78 0.64 0.3 1.0 - 3.97 - -2.96 -1.59 -1.36 -2.41 - - 1.28 -0.52 -0.36 1.53 1.56 1.49 - - - -2.36 - -2.51 - - - - - - -2.11 - - - - -1.5 -3.4 -1.05 -1.41 -2.39 -1.03 -1.61 - -
-2.61 -1.72 -1.5 0.81 2.08 0.64 2.68 -0.37 -2.5 0.78 0.44 -0.29 -2.37 0.92 -2.16 - 4.17 0.48 0.36 -0.81 -0.93 -3.53 -2.51 - 0.49 -0.32 -0.2 -2.63 -1.18 -2.67 -1.63 -2.02 -2.59 - - -0.73 -1.95 -3.87 -3.78 -1.24 -0.4 -3.22 -3.69 -4.55 -1.0 -2.0 -0.1 -0.98 -1.64 -0.45 -1.61 -1.19 -1.74 -2.67 -1.13 -2.48
- - 1.45 3.37 3.22 0.65 - - - 1.44 - - - 3.53 - - - - 2.68 1.2 - - - - - -1.77 - 1.32 1.19 - - - - - - - - - - - - 0.47 - - - - - - - - - - - 0.25 0.48 -
0.13 0.0 0.06 0.2 -0.87 -0.46 -0.59 0.02 -0.53 -1.21 1.82 0.1 1.02 0.61 0.09 -1.46 2.65 -0.5 -1.57 -0.78 0.07 0.3 0.27 -0.99 -0.07 -0.5 -0.75 -0.12 -0.16 -0.62 -0.25 -0.88 -0.39 -0.58 -0.11 -0.6 -0.37 -0.46 -0.16 -0.2 -0.51 -0.78 -0.17 0.01 0.04 0.25 -0.58 -0.82 -0.82 -0.33 0.08 -0.05 -0.34 -0.7 -0.38 0.64
- - - - 4.12 - - - - - - 3.87 2.56 0.3 3.51 2.44 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 1.76 - - - -0.79 - - 1.31 2.47 4.01 1.47 3.52 - - -2.9 - - - - - - -1.85 - - - - - - - - - - - - - - - - - - - - - -1.4 -2.49 0.86 0.09 1.69 0.56 1.31 0.78 -0.15
- - - - 3.85 - 5.38 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 4.53 - - - - - - 2.95 - - - - - - - - - - - - 3.58 - - - - - - - - - - - - - - - - - - - - 2.88 - - - 2.54 - - - - - -
- - - - 1.64 0.2 3.46 - - 0.19 - 2.87 1.03 0.07 1.82 - 4.63 - -3.19 - - - - - - -4.93 - - - - -2.79 - - - - -0.87 - - - - - - - - - - - - - - - - - - - -
- - - - 3.56 - - - -3.4 - - 3.84 0.41 3.4 1.55 - 2.35 3.02 -1.84 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.03 - - -1.3
- -2.44 -0.49 0.18 0.76 1.65 1.49 -2.23 -2.03 -0.19 0.04 1.33 2.77 2.86 1.79 -0.81 3.82 0.39 -0.45 -1.19 - - -1.5 - -3.99 -3.27 -1.24 -2.35 -4.07 -2.39 -4.93 -4.82 -3.29 - -5.06 - - - - - -3.64 - -0.17 -0.35 0.35 -0.86 - -2.6 -2.56 -2.19 -2.52 -2.9 -2.73 -2.29 -1.96 -4.81
- - -1.02 0.9 4.05 1.85 - 0.58 -1.3 - 2.09 -1.85 0.73 3.46 0.05 - - 1.96 -2.44 -0.27 - -1.09 - - - -2.44 - -1.15 -1.28 -0.19 -2.07 - - - - -1.19 -2.06 -1.14 - -0.77 -0.91 -2.01 - -1.83 0.7 -1.9 - -1.48 -2.02 -2.11 - - -2.05 - - -3.71
- - - - 3.96 - - - - - - 3.06 4.07 - 2.65 - - - 1.24 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.75 - - - - -
- - - 2.42 3.64 - - - - 0.94 - 3.1 3.96 2.42 2.35 - - - 0.13 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.91
-2.96 - -1.27 0.4 1.45 2.11 2.76 -3.77 -3.49 1.78 -0.29 1.8 0.49 0.27 0.86 -0.85 4.02 -0.04 1.29 -3.1 - - - - - -0.17 - -1.98 -3.11 -3.02 -2.23 -2.86 -3.81 -2.7 - -1.94 -2.59 -2.49 -4.13 -1.87 -2.19 -3.57 -2.73 -3.16 -2.93 -2.83 -2.78 -4.12 -1.92 -0.39 -1.34 -0.46 -0.86 -4.06 -0.13 -3.4
- - - - 3.05 - - - - - - 4.06 1.02 - 2.6 - - - - 0.55 - 0.73 - - - -2.04 - 1.67 - - - - - - 0.99 - - 0.42 - 0.41 - - - -0.25 0.73 - - -0.21 -1.79 0.58 1.84 - - 1.59 - -
- - - - 4.74 - - - - - - 3.65 2.62 - 3.21 - - - - - - - - - - 0.39 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- -0.08 1.95 1.96 3.7 1.86 - -1.88 - 2.06 0.59 - 0.32 2.69 - 2.62 - 1.95 1.52 - - -1.93 - - - -4.33 - -0.99 - - -1.67 - - - - -2.03 -1.6 - - - - - - - - -1.74 - - -4.71 -0.01 - - -0.36 -2.07 - -3.45
- -2.01 0.53 1.3 1.13 2.73 -1.81 -2.81 -6.29 -1.48 - 3.5 1.7 1.52 1.64 1.89 - 3.02 -1.6 - - - - -0.92 - -5.85 - - - - -4.05 - - -2.68 -2.04 - -2.82 - - -2.51 - - - -3.84 - -2.67 - -3.75 -1.26 -0.81 -0.07 1.15 -0.11 0.51 0.42 -4.34
- - - - 3.08 - - - -1.96 1.93 0.36 0.59 3.21 4.5 - - - - 1.37 - - - - - - -2.63 - - - - - - 0.37 - - - - - 0.19 - - - - - - - - - - 0.24 - 0.33 - 0.26 - -
- - 0.97 - 2.85 - 1.94 - - -1.65 - 3.07 1.76 3.9 1.72 2.64 - 1.78 -1.01 - - - - - - - - - - - -1.15 - - - - - - - - - - - - - - - 1.04 - - - - - - - - -
0.55 2.9 0.24 1.25 -0.37 -0.45 - 0.66 -5.5 -3.96 1.77 0.64 -0.19 1.18 0.21 -0.08 3.38 - -3.63 -1.5 - 0.42 - 0.11 0.47 -0.6 -1.36 - - - -1.4 -0.37 -2.3 -2.36 -0.24 - - -1.71 -0.23 -1.08 0.59 -0.12 - - - -2.22 - - -4.99 0.0 0.59 0.19 0.27 -0.48 0.01 0.19
1.09 - - - 1.05 - - 1.23 -3.33 2.35 - 3.6 1.33 4.34 1.53 - - - 1.33 - - - - - - -2.08 - - - - - - - - - - - - 0.37 - - 0.48 - - - - - - -2.45 - - - -0.12 - - -
- - 1.43 2.05 3.2 1.94 - - - - - -2.85 -0.95 - - 1.76 - -15.9 - - - - - - - -1.48 - - - - -0.42 -0.87 -0.2 1.91 1.63 -2.55 -4.37 0.37 0.96 1.6 -2.55 1.22 - - - - - - - 1.7 -1.76 0.44 -0.37 1.94 1.05 1.13
- - - - 2.32 - - - - -0.44 0.44 1.7 2.34 2.38 - - - - -0.19 0.3 - - - - 3.68 - - 1.42 3.28 2.38 - - - - - - - - - - 0.55 - - - 0.45 - - - - - - - - - - -
- - 1.34 - 2.9 3.24 - - - - - 4.51 2.11 - 3.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.16
- - - - - - - - - 1.21 - 3.98 - 4.89 - - - - - - - - - - - -0.73 - - - - - - - - - - - - - - - - - - - 2.94 - - - - - - - - - -
- -0.24 - -0.21 -0.36 - - -2.04 - - - 3.22 1.18 - 2.0 0.65 5.02 - - - - -2.09 - - - -4.84 - - - - - - - - - - - - - - - - 0.72 0.59 - - - -3.04 -4.67 - - - - - - -
- 2.35 - - 3.02 - - - -3.47 - - 2.65 3.01 4.56 2.15 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.64
- - - - 4.11 - - - -2.1 0.94 - 1.4 3.69 3.51 0.93 - - - 1.9 - - - - - - -2.2 - - - - - - - - - - - - - 0.82 - - - - - - - - - - - - 1.02 - - -
- - 0.42 -0.35 1.08 1.66 - - - -1.3 - 2.8 -0.95 -0.65 1.16 2.09 4.98 - -1.12 - - - - - - -2.24 - - - - - - - - - - - - - - - - - - - - - -3.19 -3.26 -1.32 -1.29 - - -2.5 -2.14 -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.