Heatmap: Cluster_149 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d002268 (GRMZM2G300497)
- - - - -1.85 - - - - - - -4.33 - - - -2.32 - - 0.33 0.62 - 4.02 - - - - - - - - - - - - 1.39 0.58 3.73
Zm00001d003769 (GRMZM2G113646)
- - - - -3.87 0.14 0.31 - - - - 0.55 - - -1.13 2.83 - - - - 1.9 - 0.74 3.04 - - - -3.36 - - 3.31 - - - -1.27 -0.08 -0.81
Zm00001d004333 (GRMZM5G878497)
- - 1.19 0.99 0.02 -2.69 -4.79 - - - 3.38 0.29 - 2.45 -3.15 1.15 - - -1.25 -5.49 -0.65 - - - 1.31 - 1.78 0.9 - - - - -0.99 - - -1.29 1.19
- - - -1.02 1.09 -5.42 - - - - 3.98 0.15 - -3.33 - 2.53 -1.53 -0.69 -2.8 - - -0.87 - - -1.1 - - 3.02 - - - - -2.19 - -2.06 -2.22 -0.66
- - - - 0.66 -0.69 1.33 - - - 2.1 0.25 - 2.53 - 1.41 -2.39 -5.15 0.79 -7.79 1.09 - - - -6.96 3.15 -3.21 1.57 - 0.35 - - -0.58 -4.39 - -1.6 -
Zm00001d005719 (GRMZM2G168758)
- - - -0.52 0.63 -2.94 -1.1 -3.11 -3.4 - -0.76 -0.31 - -0.47 -0.69 -0.23 -1.91 -1.22 0.45 -3.25 2.85 0.46 1.96 -2.13 -0.31 0.8 3.01 -0.24 - -0.66 -2.31 - -1.0 0.33 -3.4 -0.44 -0.77
Zm00001d005722 (GRMZM2G376540)
- - - - 2.5 - - - - - - -4.19 - - - 0.95 1.06 0.31 0.76 - 4.21 - - - 0.35 - 1.03 -0.15 - - - - -1.35 - -2.06 -2.58 -0.22
2.1 - 0.12 - -0.47 - - - - - - -1.5 - 3.27 - -1.31 - - -2.38 - - - - - -1.34 - - -3.48 - - - - - - 1.04 -1.72 4.13
Zm00001d007492 (GRMZM2G314940)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21
Zm00001d008419 (GRMZM2G076458)
- - - - - 2.05 - - - - - -4.02 - - - -1.51 - - - - - - - - - - - - - - - - - - - - 5.02
- - - - 1.18 - - - - - - - - - - -0.06 3.13 - 1.78 - - - - - - 3.89 - -0.67 - - - - 2.22 0.55 - - -
- - - - -1.83 - - - - - - -2.74 - 4.79 - 2.86 - - -0.62 - - - - - - - - -2.41 - - - - - - - -0.25 -
- -1.9 -2.09 - -7.83 -1.4 -2.41 - - - 1.65 -0.03 - - -1.9 1.8 - 0.51 1.65 1.22 - - -0.46 - -0.87 1.84 - -4.58 3.86 - - - -2.5 -2.36 0.27 -2.96 -
- - - - -3.06 - - - - - 1.72 -2.33 - - - 0.93 0.35 - -0.16 -3.51 - - - -2.66 - - 0.03 - 4.65 - -1.48 - -0.94 - - -3.56 1.03
Zm00001d012129 (GRMZM2G398473)
- - - 0.89 1.09 -1.34 -0.59 - - - 3.3 -0.52 - 2.11 - 0.69 0.79 - -0.67 - -3.8 - - - -0.9 - - 1.88 - 0.76 - - -3.62 - 0.25 -1.38 2.47
Zm00001d012257 (GRMZM2G148773)
-3.55 -4.46 -0.44 -2.0 0.34 -0.53 -2.38 -0.59 -0.98 -1.11 0.65 -0.02 -3.44 0.72 -1.03 -0.03 0.57 0.06 -1.51 -7.5 -1.13 0.51 -0.16 0.56 0.31 -0.04 -1.2 -0.19 - 2.21 0.32 -5.19 -2.57 -0.86 -0.1 0.48 2.75
Zm00001d012500 (GRMZM2G440125)
- - -0.4 0.61 0.55 -3.78 0.87 -4.44 0.14 -0.56 -0.84 1.77 -0.72 -0.28 -0.09 2.44 -5.49 -2.68 -1.16 - -3.49 0.52 -0.6 -2.57 -0.87 0.38 -3.61 0.62 - 2.07 -4.16 1.82 -0.31 -0.7 -2.57 0.78 -2.45
-1.6 -0.44 0.42 0.3 1.04 -0.15 -0.78 0.41 -0.83 -0.74 1.66 -0.28 -1.43 1.52 -1.13 1.04 -1.88 -0.32 0.08 -1.36 -0.92 0.2 -1.1 -0.29 -1.09 0.14 -0.41 0.64 -2.36 -1.57 -0.49 -2.16 -0.56 -0.31 1.45 -0.86 0.97
0.54 - 1.21 - -0.86 -0.98 - 0.95 -2.02 -0.84 -0.63 -1.03 - -1.5 -0.14 -0.67 0.1 1.18 0.58 - -4.05 - - 1.63 -0.93 - - 1.11 - - 0.94 - 1.06 1.13 -1.13 0.89 2.86
- - - 0.45 -3.0 1.68 -3.38 0.67 - - - -2.78 - - - 2.11 1.28 - 0.86 1.66 3.46 1.72 - -3.15 -0.39 - - 0.88 - - - - -0.7 - -1.09 -2.92 -1.0
- - - - 0.14 -3.3 1.91 - - - 2.08 -0.21 - 3.13 - 1.45 -3.38 - 0.64 -7.71 1.45 - - -1.65 - 2.48 - 1.84 - -2.29 - - -0.92 - - -0.49 -2.78
- - - - - - - - - - - 4.13 - - - 4.28 - - - - - - - - - - - - - - - - - - - - -
- - - - 3.44 - - - - - - 1.38 - - - 3.21 - - - - - - - - - - - - - - - - - - 3.16 2.42 -
Zm00001d015015 (GRMZM2G123607)
-3.08 - - - -3.21 -1.65 - - - - -0.28 0.28 - - -3.51 1.73 -1.13 - 1.39 -4.49 -2.61 - - 0.93 1.02 2.47 - -4.74 3.68 2.11 - - -2.07 - -0.83 -1.96 -
- - - - - - - - - - - - - - - 2.0 - - - 5.04 - - - - - - - - - - - - - - - - -
- - - - - - - - - - - -0.85 - - - - - - - - - - - - - - - - - - - - - - - - 5.19
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21
Zm00001d015675 (GRMZM2G429781)
- - - - -2.61 0.15 - - - - - -2.26 - - - -1.39 - - - -3.67 -3.04 - 4.14 2.3 - - - -4.05 - - - - -2.32 - 0.08 - 3.47
-4.91 - -4.18 - 0.46 0.71 - - - - -2.7 0.04 - 2.53 -1.28 2.12 -1.67 -2.4 1.66 -0.84 -0.04 1.78 2.45 -0.97 0.34 - -2.97 -1.19 - - - - 0.85 -1.89 -0.91 -0.67 1.32
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
Zm00001d016341 (GRMZM5G824763)
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - -2.8 - - - - - 0.37 -1.48 - - -6.13 -0.78 - - -0.15 1.43 -4.3 - - -3.11 - - - 1.12 - 4.41 2.15 - 1.48 -2.26 - - -
- - - - 3.86 - - - - - - - - - - 3.19 - - 3.49 - - - - - - - - 1.1 - - - - - - - - -
- - - - 0.46 - - - - - - 0.13 - - - -1.85 - - - - - - - - - - - - - - - - - - 1.32 - 4.99
-2.51 -2.3 -1.55 - -1.19 - -1.62 - - - 1.92 -2.72 - - -3.51 -0.56 -2.41 - 1.87 -3.02 -1.66 - - -4.17 -3.13 0.51 - -0.81 - 0.62 -2.29 - -1.83 - -5.77 -0.95 4.45
Zm00001d019887 (GRMZM2G700049)
-3.02 0.19 0.2 0.56 0.65 - -6.59 -0.26 - - - -2.39 0.43 1.35 -1.21 1.18 -0.67 -1.5 0.01 -1.66 1.37 0.78 - 1.56 -0.94 -1.71 0.57 -0.37 2.5 0.21 -0.16 -0.49 -0.49 -1.27 -1.73 -1.62 0.15
Zm00001d021039 (GRMZM5G825834)
-3.68 - 1.68 - 0.54 1.16 -3.8 -3.57 - - 1.27 -0.37 - 0.55 -2.53 1.25 -2.81 - 0.52 -3.05 -0.68 - - -2.66 -0.2 1.28 -0.02 2.26 - - -0.77 - -0.1 -1.33 -3.83 -2.75 3.17
- - - - 2.75 1.32 - - - - - -1.89 - - - 1.86 -2.13 - 1.37 - - - 3.23 2.18 -1.28 - - -0.86 - - -2.02 - - - 1.22 1.67 -1.25
Zm00001d021255 (GRMZM2G325238)
- - - - -11.0 - -1.36 -4.38 - -4.94 - -1.95 1.19 -0.77 0.15 0.17 - 0.68 -2.41 -7.29 -3.12 -1.57 - -4.47 0.03 1.52 0.3 -1.76 - - -4.23 - - -0.71 2.21 0.45 4.07
- -5.03 - - 0.75 1.59 - - - - 2.37 -2.7 - -2.46 - 1.18 -5.31 - 0.35 -6.25 - - - -5.58 -5.55 - - 1.12 1.73 - - - 0.01 -0.15 -2.99 -2.66 3.95
Zm00001d023352 (GRMZM2G424628)
- - - 0.78 -1.98 - -1.87 - - - - -2.9 - 3.4 - 1.29 -5.59 - -3.49 -2.69 - 4.26 - - 0.34 - - -3.19 - - - - -2.56 - - -1.76 -1.38
Zm00001d023615 (GRMZM2G004060)
- - - - - 4.24 - - - - - -3.82 - - -0.23 3.65 - - - - -0.79 - - - - - - -1.19 - - - - - 0.93 -2.49 0.62 -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
-3.98 -4.56 -3.53 -1.63 0.2 -0.59 0.1 -1.27 -1.62 -3.0 -0.83 -0.75 -1.13 -2.14 -2.17 0.61 -2.29 -1.17 -0.04 -5.17 1.12 1.09 -1.27 -1.47 0.91 -2.4 -1.7 -1.59 - 2.5 3.19 -0.38 -1.35 1.25 -4.38 -1.22 -0.19
- -6.22 -6.29 4.17 -0.57 -0.01 0.25 - -5.83 - -3.11 -1.71 - 1.72 -9.12 1.03 - -3.2 2.06 - -7.67 - - -7.78 -5.21 -2.9 - 0.34 - - -4.77 - 1.24 - -2.79 -0.95 0.64
-0.77 -1.59 -0.12 0.39 -0.28 -1.98 -4.44 - - -3.71 1.87 -2.92 - 0.42 -2.46 0.6 -1.05 0.85 -0.45 -0.63 - - 1.81 -3.21 -1.3 - - 1.26 2.92 1.93 -1.32 0.39 -0.93 -0.77 -2.03 -1.75 -0.02
Zm00001d026133 (GRMZM2G117667)
- - 2.55 - 3.49 -0.86 - - 0.57 - - -1.8 - - -1.83 2.83 - - - -2.94 - - - - - - - -0.65 - - - - -0.79 -1.37 -1.25 1.92 2.09
- - - - - - - - - - - - - - - -2.07 - - - 0.91 1.12 - - - - - - - - - - - - - - - 5.03
Zm00001d028288 (GRMZM2G480698)
-2.33 -0.15 - 2.2 0.47 -0.42 -0.55 0.96 -1.99 -1.24 - -1.91 0.51 0.15 0.06 1.02 0.38 1.17 -0.14 -5.57 -2.05 - -2.93 0.3 1.33 -1.76 -1.01 1.58 - 1.61 -0.46 -1.45 -0.59 0.2 -1.4 0.31 -5.04
Zm00001d028675 (GRMZM2G026910)
-7.09 - -5.52 -4.01 -2.19 -2.98 0.76 -0.48 -0.17 -0.78 -1.0 0.67 0.05 1.35 1.13 1.47 -0.13 -0.07 -0.66 - 0.1 0.34 -0.18 -0.53 0.34 2.46 -2.26 -0.39 - -0.35 1.62 -3.32 -2.7 -0.48 0.73 -0.16 -1.02
-0.93 -1.64 - - -1.28 - - - - - - -2.86 - - - 0.2 - - - - - - 3.92 - - - - - - 4.14 0.26 - -4.04 - - - -1.32
Zm00001d030658 (GRMZM2G166166)
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - -2.6 0.97 - - - - - -2.31 - - -1.76 -2.74 - 0.69 1.96 - -0.94 - - - - - - -2.46 - - - - - - - 0.61 4.73
- - - - 2.49 - - - - - - -1.37 - 2.39 -5.3 2.71 - - -3.11 - - - - - - - - 4.07 - - - - -3.56 - - - 1.11
- - 1.61 3.56 -1.53 - - - - - - - - - - 2.29 - - - - - - - - - - 3.71 -0.4 - - - - -2.25 - - - 1.53
-4.54 - - 2.05 3.8 - - - - - 1.55 -0.69 - - - 3.05 - - - -2.65 -4.14 - -2.09 - - - - 1.09 - - - - 0.68 1.09 -4.68 -5.3 -0.54
- - - - 0.17 0.2 - - - - -0.51 -3.97 - - - -0.5 - - - -1.54 -1.14 - - - - - - 2.6 - 0.99 -1.92 - -2.32 -2.93 -1.7 - 4.56
Zm00001d035342 (GRMZM2G001924)
- - 2.23 - 1.24 0.8 - - - - - 1.22 - - 0.86 1.91 - 1.56 - 2.05 - - - - - - - 2.25 - - - - 0.73 - 2.39 -2.47 0.45
-3.86 - 0.24 0.68 2.17 0.39 0.18 -4.89 - - 4.05 -1.46 - - -1.78 2.12 -4.06 - -1.12 -6.8 -1.18 -2.78 - - - - -0.85 -1.2 - - 1.45 - -3.05 - - -1.0 -2.67
- - - 0.73 -2.82 0.75 -3.14 - - - 1.54 -1.03 - - -3.51 1.22 - - -1.88 -2.42 - - - - - 2.18 - - - - - - - - - -2.99 4.49
- - -0.87 - 1.29 -2.3 -2.74 - - - 0.05 -3.58 - - -4.15 1.68 -1.02 - -0.95 -1.28 -1.53 - - - - 1.16 1.31 1.17 - - - - -1.19 -2.87 2.28 -2.67 3.9
- - - 0.81 -7.81 -4.41 -2.48 0.42 - - -0.61 -1.78 - - -4.48 -2.98 - - -1.52 -6.67 -1.85 - -2.83 - -4.56 - - - - - - -1.04 - - -3.91 -3.33 4.96
- - - - -0.9 - - - - - - - - - - -0.49 - - - - - - - - - - - - - - - - - - -0.45 - 5.13
0.37 0.08 2.39 - 0.09 - -1.24 -1.82 - -0.28 0.25 -0.44 - 0.29 -0.53 -0.08 -1.13 - -0.35 - -2.09 0.47 - 0.27 -2.18 - 0.94 -0.11 - - 0.65 - -0.26 -0.3 -3.6 -0.88 3.47
- - -1.1 1.88 -0.55 0.29 -0.37 0.74 - - - -1.21 - - -3.38 2.33 - - 0.85 -2.61 1.89 - 0.04 1.59 -0.64 - - -0.83 - - 2.42 1.83 -0.51 - -0.71 0.43 -1.07
Zm00001d042467 (GRMZM2G006620)
- - - - 0.8 - - - - - 4.39 0.13 - - - 2.36 - - - - - - - - - - - 2.95 - - - - -1.74 - -6.12 -5.84 -
Zm00001d042645 (GRMZM2G419852)
- - - - -3.8 - - - - - - 0.42 - - - 3.92 2.38 1.62 1.45 -0.37 - - - - 0.38 - - -2.04 - - - - - - 2.56 0.26 -
- -0.04 - - -1.82 -0.54 - - - - - -4.58 - - - 0.82 2.55 1.28 - - - - 1.39 - - - - -2.98 - - - 3.87 -1.11 - - 0.01 2.6
- - - - -3.89 -1.85 -4.33 0.87 - - - -4.06 -2.56 - -1.81 2.06 -2.62 -0.76 1.21 -4.23 1.49 2.48 -3.29 1.0 2.04 - 2.74 0.27 - -1.59 1.26 - -3.43 -0.48 -1.7 -1.49 -1.78
Zm00001d043463 (GRMZM2G043926)
3.63 0.91 - - 1.46 - - - -1.87 - - -5.97 - - -1.47 -3.87 - 0.16 2.08 -4.47 -3.69 - - - 0.07 - -1.56 -0.23 2.6 - 0.92 - -2.84 1.67 -6.1 -4.1 -2.65
Zm00001d043572 (GRMZM2G059795)
0.45 0.06 - - 0.27 - - - - - 0.25 -0.09 - - - -2.6 - -1.99 -4.06 - 0.27 - - -0.64 -2.65 - - -1.27 - - - - -2.35 -2.64 - 0.49 4.73
Zm00001d043710 (GRMZM2G425638)
-0.82 0.61 - -2.0 0.84 -1.42 -4.11 0.2 -3.31 -2.21 - -3.24 -1.05 -0.02 0.32 1.54 -1.54 -0.2 -0.59 -0.05 0.35 0.62 - 0.23 0.96 - -3.62 -0.67 3.47 -0.4 0.45 - -1.31 -1.98 -2.59 0.28 -0.86
Zm00001d043908 (GRMZM5G848942)
- - - - - - - - - - - -1.59 - - - -1.17 3.76 - - - - - - - - - - 1.36 - - - - - - - - 4.33
- - - - - - - - - - - - - - - -2.63 - - - -1.03 0.17 - - - - - - - - - - - - - - - 5.14
- - - - 4.33 - - - - - - - - - - 4.07 - - - - - - - - - - - - - - - - - - - - -
Zm00001d045616 (GRMZM2G459156)
- - - - 3.28 - - - - - - - - - - 1.44 - - - - - - - - - - - - - - - - 4.62 - - - -
- - - - 2.34 -2.04 2.83 - - - -0.29 -1.46 - - - 3.24 -0.66 - -3.2 - -0.4 - - - -4.11 - - - - 3.24 -3.08 - 0.1 - 0.69 -3.16 -
- - - - -4.27 1.03 - - - - 2.09 -4.2 - - - 0.38 0.62 - -1.36 - - 1.45 - - - - - - - 3.94 - 2.71 -3.91 - - -2.27 1.29
Zm00001d046760 (GRMZM2G377123)
- - - 2.37 -1.38 -1.44 - - - - -0.59 -2.65 - - -2.49 -0.45 - -3.78 0.25 -2.46 1.95 3.75 - - -1.13 - - 0.68 - -0.02 -1.17 - -3.87 -2.58 -2.45 -2.0 2.68
Zm00001d046975 (GRMZM2G472087)
- - -4.72 - 0.09 -0.28 -1.11 -2.59 -2.21 -3.35 2.28 1.09 - -3.01 -0.77 0.91 -1.91 -3.74 -0.01 -7.88 -3.11 -3.29 -0.59 -4.32 -0.83 0.39 -3.13 -1.41 - -0.35 -2.24 - -1.63 -3.14 -0.14 -0.48 4.08
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
Zm00001d048788 (GRMZM2G165320)
-4.39 - -3.78 - 0.29 - - - - - - - - - -7.21 1.44 - - -5.23 - -1.56 - - -4.14 - - - -1.11 - 4.38 2.5 - 0.03 -2.55 - - 2.11
Zm00001d048961 (GRMZM2G058832)
- - - - -3.49 -0.49 -0.98 - - - -0.4 -0.99 - 4.15 -2.52 2.03 2.23 -5.05 0.25 0.61 -6.69 - - -7.92 -1.87 0.67 - -6.44 - - - -1.45 0.83 - - -0.21 -3.56
-4.17 -0.35 -3.23 1.7 -3.42 -4.33 - - - - - -1.3 - - - 2.09 - - - - - - -1.72 - - - - 3.91 - - - - 0.92 - -5.21 -3.35 3.41
Zm00001d049068 (GRMZM2G181536)
-3.45 - - 1.21 -0.05 1.79 -0.02 -1.74 -1.09 -4.6 0.93 1.62 - -2.69 0.72 2.95 -0.88 - 0.22 0.13 -4.22 -3.39 1.96 - 0.51 - - -1.37 - - -3.28 - -5.99 -3.36 -0.79 0.93 1.34
0.63 1.65 0.85 - 0.29 - -1.78 -1.42 0.02 0.62 1.37 0.79 - - 1.36 -0.29 -0.74 - -2.47 - - - 0.18 1.74 - - - 0.33 - - 0.75 - -1.04 1.04 -2.05 0.45 2.6
- - - - -3.75 2.1 - - - - - 0.61 - - - -2.26 - - - - - - - - - - - 2.11 - - - - 0.28 - - -5.57 4.66
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21
-1.42 - -0.69 - 1.11 - - -2.88 - - 0.95 -1.09 - 1.26 -5.46 1.62 -2.04 0.3 1.88 -2.5 0.08 - - - -0.8 - -1.42 0.2 - - -1.93 - -3.84 -4.16 -2.37 -1.32 4.03

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.