Heatmap: Cluster_289 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - -0.04 - - - - - - 0.26 - - - 0.23 - - - - - - - - 1.37 - - 0.02 - 4.24 3.15 - - - -3.0 -1.31 0.88
Zm00001d002229 (GRMZM5G834759)
- - - - - - - - - - - - - - - 4.13 - - - - - - - - - - - 4.28 - - - - - - - - -
Zm00001d002408 (GRMZM2G090872)
-5.45 -4.55 -6.23 - 0.89 0.37 -4.44 -2.66 -5.07 -4.14 -0.89 -0.54 - -4.13 -4.28 1.3 1.95 -4.73 -0.72 -3.96 3.28 -0.61 - -7.73 -0.64 0.06 -4.76 1.48 - 1.54 -0.58 - -3.73 -7.38 0.88 -0.14 1.94
Zm00001d005258 (GRMZM2G068230)
- - - - 0.94 - - - - - - -2.92 - - - 1.37 - - - -0.24 3.5 - - - - - - - - - - - - - - - 4.34
- - - - - - - - - - - - - - - 0.55 - - - 2.7 2.11 - - - - - - - - - - - - - - - 4.63
- - - - -0.66 2.85 - - - - - -1.04 - - - 3.29 - - 0.51 - 3.76 - - - - - - - - - - - - - - -0.4 1.65
- - - - 0.47 0.51 - - - - - -0.1 - - - 1.47 - - - - 0.0 - - - 0.13 - - -2.09 - 3.88 2.87 - -0.78 - 1.73 - 1.16
- -0.27 - - -0.6 2.3 2.53 - - - - -7.78 - - -3.26 0.28 - - - -2.49 - - - - - - 2.1 -1.15 - 2.87 -0.63 - - - 3.36 -1.53 -
Zm00001d006136 (GRMZM2G171561)
-1.64 -1.74 -0.42 - -0.72 - - - - - 2.14 -1.38 - - - -0.63 - - -2.3 -2.36 -1.44 0.05 - -2.07 -1.27 1.73 - -0.05 - - -2.11 - -3.14 -3.28 4.35 -1.32 0.65
- - -2.71 1.5 0.92 -0.99 -1.45 -5.63 - - 1.15 -0.23 - -1.5 - 1.64 3.34 -4.01 1.11 -3.01 -0.78 1.46 - -1.26 -0.86 1.13 -1.59 0.72 0.44 - -2.15 - -1.38 - -0.26 -0.07 -
Zm00001d009217 (GRMZM2G458867)
- - - - -0.36 - - - - - - - - - - 1.03 - - - - 2.85 - - - - - - - - - - - - - - - 4.75
- - 3.2 - 0.87 -1.76 -0.21 - - -4.75 0.99 -0.8 - - -5.56 0.65 -2.84 0.36 0.61 - -4.92 -0.76 3.49 -1.1 -0.51 -1.56 -3.74 0.12 - 0.33 -0.44 - -3.14 -6.3 -1.06 -1.61 -2.23
Zm00001d009362 (GRMZM2G056524)
-5.05 - 4.64 - 0.89 -4.4 - - -1.39 -2.54 1.84 -5.53 - - -2.02 0.04 -3.74 0.42 -3.44 -3.86 - - - -1.47 -3.14 - -2.66 -2.46 - - - - - - 0.85 -1.04 -
-3.4 - - 0.61 -2.63 -0.58 -3.2 0.29 - - -0.82 -0.91 - - -0.54 -3.17 2.31 0.87 1.28 -3.24 -0.06 - - -0.79 -2.54 - 0.58 -0.74 - 2.21 1.78 - -1.38 -1.39 3.1 -0.32 -
Zm00001d011667 (GRMZM5G830549)
- - - - 0.77 - 3.59 -1.93 - - - -1.21 - - - -0.0 - - - - 0.61 - - - 1.04 - - -0.45 - 3.78 - - -2.05 - -4.57 - 1.71
- - - - -2.89 - - - - 2.4 - -0.66 - - - -1.12 - - - 1.86 - - - - - - - -1.01 - - - - - - 4.56 1.48 -
Zm00001d014207 (GRMZM2G366638)
- - -3.13 - 0.05 0.99 -2.23 - - - 1.77 -1.29 - - - 0.99 2.57 -6.27 0.33 -6.56 -0.43 1.62 - -5.43 -0.32 0.92 -3.17 0.92 - 3.17 0.18 - -5.34 - -7.96 0.02 -0.12
- - - - 1.72 0.4 - - - - 2.27 -2.19 - - - 2.74 0.75 - 1.85 - 3.22 - - - -0.29 - - - - - 0.87 - 0.15 - 0.12 0.31 -
2.51 2.11 2.06 - 1.42 - - - - - - 0.03 - - -1.1 1.8 - - - - - - 2.23 - - - - 0.42 - - 0.62 - 1.19 2.06 - 0.19 -
-3.56 -1.34 -2.62 - 0.12 -2.8 - -0.21 -3.38 - -1.15 -1.2 -0.49 -0.03 -4.14 0.7 1.09 -0.44 0.56 -6.88 -0.25 0.09 -4.22 1.05 -0.12 -0.46 -3.27 0.91 - 3.33 1.21 - -1.34 -0.31 1.42 -1.61 0.42
- - - - - - - - - - - -0.39 - - - 3.01 - - - - - - - - 3.76 - - - - - - - - 3.32 2.21 - -
Zm00001d019953 (GRMZM2G119635)
- - -0.87 - -0.89 -0.6 -0.4 - - - - -1.14 - - -2.23 -0.79 - 1.25 - 1.42 - - - - -2.19 3.26 - - - 2.43 - - -3.22 - 3.57 -1.17 -0.91
- - - - -3.65 4.32 - - - - - -1.62 - - -0.15 -0.12 3.42 - - - - - - - - - - - - - - - 1.57 - - 0.2 -
Zm00001d023991 (GRMZM2G133577)
- - - - 0.8 - 0.79 3.8 - - - -1.33 - 3.81 - 1.09 - - -1.33 - - - - - -1.83 - - - - - - - - - - - 1.29
Zm00001d025404 (GRMZM2G007633)
- - - - 0.85 -0.2 - - - - - -2.54 - - - 3.02 - 0.75 -2.81 - -2.98 - - - - - - 3.46 - - - - - - - 0.81 3.51
- - -1.38 0.77 -0.75 -1.33 -2.09 -2.67 - - -0.95 -1.57 - - -3.79 -0.0 - - -3.43 - -2.94 - - - - - - -1.95 - - -0.08 - -2.23 -2.53 4.81 0.04 -0.36
- - - - - - - - - - - - - - - 1.41 - - - - - - - - - - - 3.17 - - 4.47 - - - 1.68 - -
Zm00001d029407 (GRMZM2G305400)
- - - 4.33 -4.19 -3.83 - - - - - -5.2 - - - 0.08 - - - - -5.09 - - - -4.19 -0.93 - 0.15 - - - 3.14 0.95 1.4 -4.13 -1.23 -
- - - - -0.26 1.69 - - - - 0.96 -2.26 - 0.32 - 1.41 - -0.16 2.08 -1.14 2.02 - - - -0.18 - - 0.59 - - - 2.45 -1.16 0.58 -2.34 -0.2 2.68
Zm00001d029807 (GRMZM2G094077)
- - - - 1.22 -2.66 -2.82 -2.25 - - - -0.68 - - -7.37 2.54 -2.63 -5.72 1.34 - -4.25 -4.14 1.21 -5.01 -3.63 - -4.34 -1.24 1.41 -0.78 -4.72 - - - -0.58 -3.89 4.17
Zm00001d029893 (GRMZM2G143210)
- - - -3.08 0.25 -4.73 -4.09 - - - -0.63 0.26 - - -1.0 1.21 -5.17 -6.09 -3.31 -2.27 -3.22 -4.18 - - 2.32 -0.98 - -1.25 - 3.79 2.95 - -0.62 -8.14 -9.46 -1.31 0.92
-3.0 - - - -1.81 -3.38 -2.68 - -0.93 - - -2.17 - - -3.96 -2.7 -2.49 - -2.42 3.43 - - - - - - -1.06 -1.6 - - - - -1.8 -3.63 4.47 -1.91 -0.88
Zm00001d029933 (GRMZM2G112154)
- - - 0.26 -1.81 -0.54 -2.15 -1.15 - - - -3.82 -0.43 - -0.74 4.99 - - -5.15 - -2.24 - - - -3.45 - - -5.33 - - - - -4.66 -5.43 -6.64 -2.5 -1.32
- - - - 2.35 - - - - - - 0.7 - - -0.87 2.87 - - - - 0.11 - - 2.58 1.5 - 2.58 0.7 - - - - -0.4 - - -1.42 1.94
Zm00001d032406 (GRMZM2G068699)
-2.32 1.1 - 3.01 0.85 -2.15 -3.65 - - - - -2.19 - 1.1 0.45 1.49 -0.3 -2.26 -2.84 -3.61 -0.53 0.34 - - -4.43 3.3 0.14 -1.99 - -0.91 -2.76 - - -3.76 0.9 -1.81 -0.75
- - - - 0.01 - - 3.46 - - - -0.34 - - - 2.2 2.15 - - - -0.02 3.42 - - - - - -0.25 - - - - 1.37 - - - -
- - - - -0.42 - - - - - - 0.0 - - -2.14 0.48 - 0.39 0.0 - 0.13 1.4 - - -0.92 2.34 - 1.78 - - - - -1.56 - 4.0 0.54 -0.51
-0.97 - - - -1.89 - - - - - - -2.2 - 2.93 -1.81 -0.46 1.38 - 0.03 - -1.58 - - 1.15 2.67 - - -0.54 - - - - -2.06 - 3.62 -0.6 -0.07
-6.1 -4.65 -3.2 0.59 -0.37 2.18 -5.73 0.91 -2.75 -3.11 2.47 1.25 - -1.42 -1.94 1.52 -1.8 - 0.36 -8.46 -0.81 -1.16 - -2.47 -1.67 -1.18 -2.97 -0.14 2.45 - -1.31 0.29 -0.04 -3.29 -4.93 0.68 1.06
- - - - - - - - - - - -2.35 - - - -0.31 - - - - - - - - - - - - - - - - - - 5.17 - -
Zm00001d035606 (GRMZM2G700901)
- - - - - - - - - - - 1.46 - - - -4.21 - 1.91 - - - - - - - - - - - - - - - - 4.93 - -
Zm00001d036915 (GRMZM2G139796)
- - - - -0.23 - - - - - - -1.16 - - - 1.56 - - - 2.67 - - - - 3.08 - - - - - - - - - 4.16 - -
- - - - 1.87 - - - - - 3.72 -1.8 - -0.49 - 0.95 - - -0.25 -3.63 - - - - - - 2.06 0.21 - - - - 3.42 - -4.56 -2.21 -
Zm00001d037012 (GRMZM2G319988)
- - - - 1.26 -0.72 -3.94 -0.14 - - 1.45 -1.43 - -2.51 - 1.66 0.92 -1.67 1.33 - 1.15 0.28 - - -1.13 -0.3 0.31 2.6 - - 0.84 - 2.72 -2.84 -6.37 -1.84 0.02
Zm00001d039497 (GRMZM2G499197)
- - - 3.29 1.94 - - - - - 1.9 -0.29 - - - 1.56 - - -5.72 - - - - - - - - -4.96 - - - - 1.16 - - - 3.77
- - - - 0.02 - - - - - 0.06 -0.12 - - - 0.22 -0.51 - -0.04 - - - - - 1.58 - - 1.0 - 4.07 2.79 - -2.02 - -1.27 -1.24 0.51
Zm00001d039815 (GRMZM2G025817)
- -0.36 - - 0.15 2.35 - - - - - -0.35 - - - 0.66 -1.16 - -0.73 - -0.3 - - 0.01 0.29 -0.8 - -0.5 - 3.48 0.91 - -3.05 - 3.07 -0.74 -3.03
- - - - 0.09 -1.1 - - - - 0.64 - - -0.15 - 1.5 - - - 1.19 - - - - - 1.03 - 2.42 - - - - - - - - 4.36
-3.28 - -0.77 - -0.32 0.24 -1.96 - -0.21 0.51 -0.41 -0.3 -0.32 - -3.37 1.17 1.95 0.95 -0.63 -1.51 -4.1 0.63 -1.05 0.1 - 1.46 - 0.06 - - -1.03 - -1.45 0.06 -1.05 0.08 3.3
- - - - 0.66 - - - - - - 0.63 - - - 2.84 - - - - - - - 3.94 - - - - - - - - - - 3.51 - -
- - - - 0.19 - - - - - -3.11 0.0 - 2.87 -4.2 1.2 - - -3.81 - 3.3 - - - 1.72 - - -0.93 - 2.68 1.41 - -0.35 -1.22 -2.1 -0.82 -1.95
Zm00001d048504 (GRMZM2G466984)
- - - - 1.99 - - - - - - - - - 2.64 4.75 - - - - - - - - - - - - - - - - - - - - -
- - - - 2.58 1.08 - - - - - 2.23 - - - 3.21 - - 3.16 - -0.18 - - - - - - -1.38 - - 0.08 - 1.9 - - - -
- - - - -0.63 - - - - - - -1.4 - - - 2.68 - - - 3.41 3.95 - - - - - - -0.92 - - - - - - - - 1.53
- - - - 0.83 - - - - - - - - 1.24 - 1.87 - - - -2.08 - - - - - - - - - - - - - - 4.66 -0.74 1.62
- - - - -1.45 - - - - 1.59 - 1.08 - - -1.43 2.96 - - - - - - 2.9 - - - - 0.56 - - - - -0.93 - 2.35 1.54 2.56
- - - 1.32 0.99 -0.27 -3.52 - - - 0.19 -1.88 - - -5.93 2.09 -0.51 - -1.71 - 3.25 - - - - - - - - 2.79 -1.49 - -0.58 - - -3.19 2.88
Zm00001d052679 (GRMZM5G870570)
- - - - -1.47 -0.33 - - - - - -0.68 - - -5.08 2.36 3.6 - -3.76 - 3.4 - - - - - - -2.4 - - - - - - 2.67 -0.44 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.