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Heatmap: Cluster_84 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
0.37 0.28 0.34 0.24 0.08 0.23 0.43 0.17 0.19 0.36 0.68 0.77 0.64 -0.3 1.69 0.55 0.2 -0.29 -0.27 -10.62 -8.2 -8.51 -0.54 -0.01 -7.55 -1.05 -1.92 -1.09 0.42 0.55 -0.88 -0.99
Smo112070 (SRF8)
 0.14 -0.07 0.29 0.34 0.44 0.51 0.46 0.3 0.56 0.57 0.41 0.27 -1.02 -0.08 0.24 -0.54 0.06 -0.29 -0.02 -2.28 -1.72 -0.86 -0.05 -0.17 0.04 -0.79 -0.11 0.18 0.21 0.43 -0.58 -0.57
Smo131886 (PANK1)
 0.24 -0.0 0.25 0.39 0.41 0.3 0.5 0.7 0.85 0.73 0.82 0.42 -1.99 0.06 -0.41 -0.99 -0.01 -2.62 0.79 -5.8 -4.33 -3.38 -0.48 -0.54 -3.59 1.05 0.06 0.36 0.14 0.27 -0.38 -0.74
0.28 0.32 0.37 0.4 0.32 0.41 0.6 0.37 0.51 0.65 0.6 0.58 -0.5 -0.29 0.57 -0.29 0.49 -0.2 -0.24 -5.02 -6.12 -4.76 0.19 0.13 -4.03 0.21 -0.74 -0.26 0.2 0.39 -0.65 -0.95
Smo161006 (NEK5)
 0.45 0.2 0.13 0.83 0.59 0.39 0.31 0.69 0.92 1.12 0.64 1.06 -2.14 0.28 -0.25 -1.24 0.03 -2.42 0.63 -4.95 -5.93 -2.8 -0.54 -0.95 -6.2 0.52 -0.56 -0.99 0.26 0.2 -0.42 -0.58
0.2 0.37 0.73 0.73 0.7 0.69 0.81 0.35 0.53 0.45 0.35 0.14 -0.95 -0.63 0.5 -0.61 0.82 0.22 -0.57 -8.68 -5.73 -2.41 -1.14 -1.41 -5.03 -0.64 0.02 0.5 0.21 0.36 -0.35 -0.76
Smo171238 (KAS1)
 0.41 0.6 0.62 0.56 0.32 0.33 0.27 -0.13 0.27 0.31 0.36 0.3 -0.98 -0.2 0.5 -0.7 0.5 0.15 0.3 -3.08 -0.93 -2.23 -0.38 -0.2 -0.06 -0.31 -0.57 -0.56 0.14 0.16 -0.41 -0.34
-0.01 -0.02 0.09 0.22 0.22 0.5 0.31 0.37 0.47 0.43 0.18 -0.03 -0.66 0.12 0.8 -0.27 0.01 -0.4 0.19 -1.68 -1.58 -0.82 -0.03 -0.05 -0.08 -0.38 0.37 0.4 -0.24 -0.11 -0.3 -0.83
-0.13 0.27 0.24 0.57 0.43 0.84 0.61 0.45 0.57 0.56 0.26 0.11 -1.52 -0.78 1.25 -0.99 0.33 -1.66 -0.58 -2.73 -4.59 -3.33 0.09 0.31 -0.53 -0.99 0.32 0.4 0.29 0.44 -0.87 -1.37
Smo231554 (ATAIH)
 -0.15 0.16 0.08 0.34 0.39 0.34 0.59 0.64 0.54 0.44 0.33 0.09 -0.31 0.67 0.2 0.14 0.35 -0.06 0.63 -2.98 -2.74 -4.03 0.14 -0.23 -0.95 -0.09 -0.35 -0.31 -0.06 -0.04 -0.51 -1.04
Smo231555 (NHX3)
 0.02 0.4 0.19 0.58 0.53 0.39 0.66 1.02 1.01 0.88 0.78 0.46 -2.64 0.02 -0.62 -1.7 0.54 -0.03 0.66 - - - 0.03 -0.73 -5.76 0.02 -1.04 -1.05 0.2 0.26 0.04 -0.8
0.2 0.07 0.14 0.19 0.25 0.21 0.3 0.67 0.65 0.69 0.69 0.65 -1.53 -0.34 -0.17 -0.84 -0.02 -0.12 0.01 -2.84 -1.03 -1.55 -0.03 0.0 0.43 -1.06 -0.08 0.02 0.25 0.33 -0.32 -0.89
0.44 0.8 0.69 0.65 0.22 0.47 1.03 0.28 0.35 0.3 0.08 0.04 -0.9 -0.6 -0.44 0.69 0.89 0.01 -0.28 -4.51 -2.86 -5.04 -1.64 -1.38 -2.04 -0.82 -0.06 0.4 0.33 0.55 -0.38 -0.78
0.54 0.44 0.38 0.37 0.17 0.48 0.54 0.16 0.29 0.5 0.76 1.03 0.4 -0.51 1.43 0.23 0.05 -0.19 -0.53 -2.7 -1.22 -2.27 -0.83 -0.16 -1.33 -1.52 -2.36 -1.66 0.14 0.22 -1.18 -1.24
0.26 0.84 0.8 0.48 0.12 0.5 0.67 0.32 0.5 0.47 0.58 0.36 -0.62 0.68 0.71 0.06 0.39 -0.09 -0.05 -1.79 -5.34 -1.32 -1.02 -1.09 -3.19 -0.69 -1.18 -1.44 -0.23 -0.07 0.05 -0.39
Smo2945 (STI)
 -0.37 0.15 0.45 0.65 0.65 0.24 0.8 0.7 0.85 0.8 0.49 0.46 -1.49 -0.36 0.79 -0.45 0.11 -0.06 -0.39 -7.4 - - 0.07 -0.3 -5.24 0.18 -1.53 -1.3 0.04 0.05 0.28 0.36
0.35 0.62 0.66 0.77 0.49 0.79 0.65 0.58 0.43 0.63 0.4 0.12 -0.37 0.43 0.34 -0.1 0.23 -0.15 -0.88 -3.22 -3.11 -5.53 -0.65 -1.08 -2.48 0.03 -0.47 -0.29 -0.09 0.12 -0.36 -0.82
0.55 0.31 0.52 0.38 0.45 0.59 0.56 0.25 0.4 0.43 0.58 0.43 -0.62 -0.62 0.81 -0.44 0.46 -0.18 -0.24 -7.16 -6.08 -3.25 0.14 -0.12 -4.15 -1.33 -0.41 -0.05 0.21 0.55 -0.13 -0.4
0.26 0.23 0.23 0.39 0.18 0.54 0.59 -0.03 0.69 0.53 0.38 0.41 -0.88 0.03 1.12 -0.95 0.85 1.15 -1.42 -2.59 -4.82 -1.4 -0.43 -0.49 -6.11 -4.08 -3.24 -3.84 0.45 0.46 0.35 0.53
0.54 0.7 0.52 0.93 0.74 0.5 0.67 0.34 0.8 0.97 0.89 0.77 -2.11 -0.29 0.47 -1.54 0.53 -1.68 -0.96 -3.57 -3.64 -3.24 -0.33 -1.06 -5.56 -1.0 -0.27 -0.01 -0.02 0.22 -0.35 -0.96
0.53 0.68 0.82 0.69 0.72 0.67 0.96 0.58 1.06 0.6 1.0 0.65 -2.14 -0.38 0.4 -1.62 0.47 -3.7 -1.12 -5.82 -4.11 -2.41 -0.34 -1.12 -3.45 -0.53 -0.18 0.23 -0.29 -0.09 -0.6 -1.31
Smo404468 (TBL23)
 -0.11 0.46 0.51 0.46 0.33 0.43 0.49 0.17 0.45 0.4 0.38 0.15 -1.3 -0.24 0.74 -0.59 0.34 0.43 -0.68 -1.66 -2.27 -1.23 0.49 0.22 -1.54 -0.17 -0.53 -0.08 -0.3 -0.03 -0.2 -0.35
0.51 0.54 0.17 0.6 0.26 0.84 0.69 0.75 0.65 0.7 0.82 0.4 -0.53 -0.2 0.93 -0.85 0.21 -1.15 -0.44 - - -2.19 -0.34 -0.79 -2.2 -1.0 -1.32 -0.97 -0.23 -0.31 0.51 0.34
-0.09 0.31 0.73 0.71 0.8 0.79 0.67 0.53 0.8 0.56 0.63 0.12 0.56 0.05 1.08 -0.85 0.75 -0.67 -1.83 -3.9 -3.47 -2.08 -1.51 -1.57 -4.73 -0.86 -0.9 -0.66 -0.11 0.18 -0.32 -0.52
-0.03 0.22 0.3 0.52 0.37 0.49 0.5 0.35 0.34 0.16 -0.02 -0.18 -0.49 -0.32 0.64 -0.42 0.55 -0.48 -0.18 -1.9 -2.28 -1.14 0.25 -0.01 -0.65 -0.62 0.46 0.48 0.11 0.12 -0.56 -0.62
0.5 0.61 0.44 0.38 0.27 0.51 0.7 -0.02 0.69 0.55 0.42 0.58 -0.7 -0.32 0.51 -0.84 0.86 0.45 -1.19 -1.27 -1.0 -0.16 -0.52 -1.24 -2.79 -2.86 -2.06 -1.51 0.38 0.43 -0.09 -0.25
-0.27 0.52 1.06 0.95 0.99 0.84 0.93 0.81 0.83 1.02 0.71 0.26 -1.04 -1.12 0.58 -1.31 0.04 -0.39 0.88 - - - -0.11 -1.01 - -1.25 -0.93 -0.33 -1.38 -0.62 -0.83 -1.28
0.64 0.6 0.79 0.47 0.64 0.38 0.61 0.32 0.43 0.58 0.65 0.38 -3.13 -1.58 0.24 -1.29 0.35 -0.59 -0.32 -1.04 -4.22 -2.03 -1.23 -1.38 -3.27 0.27 0.12 0.63 -0.09 0.15 0.09 0.03
Smo422901 (HB-1)
 0.4 0.54 0.51 0.59 0.53 0.37 0.36 0.31 0.49 0.4 0.44 0.16 -1.46 -1.09 0.06 -0.69 0.16 -0.31 0.24 -1.81 -1.07 -2.4 -0.76 -0.74 -0.88 0.27 0.31 0.38 -0.13 0.17 -0.23 -0.15
-0.06 0.54 0.86 0.7 0.21 0.44 0.7 0.72 0.54 0.31 0.63 0.6 -4.16 -2.71 -0.93 -4.0 1.48 -5.23 0.42 - - - 0.3 -0.82 -2.85 -0.31 0.06 0.29 0.75 0.89 -0.52 -1.22
Smo424757 (DMR6)
 0.33 0.59 0.79 0.65 0.57 0.53 0.45 -0.34 0.19 0.24 0.26 0.24 -1.86 -0.3 1.34 -2.52 1.52 1.72 -2.17 -6.75 -4.6 -4.81 -2.98 -3.69 -3.33 -2.68 -1.89 -1.33 0.57 0.61 -0.03 -0.35
0.6 0.53 0.25 0.06 -0.28 -0.07 0.47 0.55 0.96 0.85 0.95 0.78 -0.79 -1.17 1.27 -0.21 -0.13 -0.51 -0.11 -4.01 -4.1 -2.92 -0.41 -0.2 -7.19 -0.09 -1.41 -1.49 0.05 0.22 0.07 0.18
0.24 0.45 0.43 0.15 0.34 0.57 0.83 0.11 0.72 0.64 0.65 0.41 0.26 0.88 0.83 0.09 1.17 1.0 -2.63 -6.05 - -5.0 -1.01 -1.87 -6.54 -2.6 -2.25 -1.84 0.23 0.34 -0.73 -1.1
0.46 0.76 0.67 0.47 0.57 0.77 0.48 -0.02 0.42 0.33 0.42 0.13 -1.11 -0.13 0.25 -0.68 0.86 0.89 -1.0 -2.01 -3.66 -3.7 -0.18 -0.53 -2.38 -1.2 -0.59 -0.23 -0.07 0.25 -0.05 -0.34
Smo64465 (SUN2)
 0.46 0.74 0.18 0.39 0.31 0.57 0.65 0.57 0.51 0.62 0.45 -0.02 -1.17 -0.7 0.95 -0.47 0.24 -0.78 -0.03 -2.04 - -2.5 -0.57 -0.91 -2.5 -0.42 0.61 0.35 -0.04 -0.29 -0.33 0.03
Smo73433 (CRK)
 0.58 0.56 0.52 0.63 0.65 0.56 0.6 0.4 0.5 0.5 0.49 0.44 -0.9 -0.87 0.24 -0.54 0.25 -0.4 0.23 -2.13 -4.41 -3.22 -0.42 -1.26 -1.83 -0.32 0.21 0.26 -0.03 0.1 -0.4 -0.48
0.44 0.6 0.88 0.84 0.69 0.64 0.8 0.33 0.85 0.71 0.6 0.4 -1.56 -0.34 1.09 -0.48 0.93 -0.97 -1.88 -4.3 - - -0.8 -1.24 -5.51 -1.68 -1.51 -0.95 0.34 0.49 -0.05 -0.96
Smo74260 (RBOHF)
 -0.19 0.19 0.26 0.61 0.46 0.4 0.4 0.25 0.44 0.29 0.51 0.13 -0.27 -1.68 -0.75 -0.75 0.94 0.04 -0.2 -1.87 -1.43 -0.53 0.8 -0.6 -1.96 -0.07 -0.75 -0.29 0.33 0.42 -0.08 -0.17
Smo74281 (MEF19)
 -0.11 -0.11 0.99 0.27 -0.18 0.43 0.23 0.22 0.53 0.36 0.53 0.07 -0.51 0.3 0.94 -0.32 0.59 -0.18 -0.41 -1.73 -1.82 -0.61 0.29 -0.04 -2.52 -0.66 -0.45 -0.15 -0.18 0.14 -0.34 -0.45
0.25 0.5 0.27 0.57 0.46 0.38 0.43 0.38 0.76 0.67 0.7 0.44 -1.73 -0.34 0.32 -1.19 0.79 -1.16 -0.62 -1.73 -2.81 -0.4 0.14 -0.68 -2.67 -0.77 -0.44 -0.31 0.27 0.4 0.1 -0.51
0.53 0.35 0.36 0.27 0.16 0.16 0.48 0.09 0.41 0.33 0.38 0.28 -1.49 -0.66 0.47 -0.58 0.8 0.11 0.01 -5.07 -3.79 -1.05 -0.73 -0.57 -2.35 0.39 -0.12 0.19 0.56 0.75 -0.27 -0.5
0.06 0.46 0.43 0.31 0.42 0.36 0.52 0.01 0.42 0.53 0.52 0.35 0.26 0.61 0.04 -0.13 0.54 0.54 -1.03 -1.36 -0.99 -0.06 0.01 -0.64 -2.54 -1.32 -1.51 -1.21 -0.09 0.14 -0.45 -0.43
Smo81154 (PGM)
 0.0 0.21 0.23 0.57 0.41 0.46 0.56 0.05 0.31 -0.07 0.11 0.04 -0.04 0.43 0.59 -0.09 0.72 0.02 -0.78 -3.72 -3.42 -4.54 0.3 0.29 -1.29 -1.3 0.22 0.43 0.23 0.29 -0.46 -0.89
0.48 0.48 0.52 0.34 0.36 0.4 0.59 0.43 0.94 0.8 0.86 0.68 -0.76 -0.12 0.95 -0.19 0.8 -0.21 -1.16 -2.58 -1.89 -2.22 -1.03 -1.71 -3.23 -1.54 -1.64 -1.29 0.41 0.6 -0.66 -0.96
Smo85451 (NEK1)
 -0.0 0.25 0.41 0.44 0.38 0.33 0.41 0.16 0.38 0.23 0.18 0.07 -0.98 -0.02 0.7 -0.78 0.72 0.24 -0.63 -0.67 -2.22 -0.4 -0.16 -0.62 -3.31 -0.59 -0.34 0.14 0.34 0.59 -0.07 -0.4
0.57 0.72 0.93 0.94 0.81 0.8 0.96 0.46 0.74 0.67 0.71 0.5 -2.06 -0.62 0.61 -1.01 0.59 -1.02 -2.09 -1.35 -3.37 -0.08 -1.07 -1.45 -2.98 -1.38 -1.14 -0.72 -0.14 0.02 -0.78 -1.34
0.1 0.5 0.68 0.54 0.37 0.43 0.65 0.47 0.81 0.92 0.86 0.72 -0.81 -0.84 1.05 -0.51 0.1 -0.38 0.41 -2.81 -7.92 - -0.9 -0.51 -3.98 -0.52 -1.05 -1.26 -0.19 -0.1 -0.04 -0.25
0.08 0.63 0.84 0.62 0.38 0.48 0.4 0.26 0.4 0.31 0.26 0.05 -1.5 -0.46 0.94 -1.16 1.11 -1.43 -0.02 -3.77 -3.56 -0.83 0.16 0.02 -2.43 -0.55 -0.42 -0.1 0.15 0.53 -0.71 -0.84
0.59 0.44 0.43 0.41 0.47 0.34 0.47 0.24 0.53 0.57 0.45 0.5 -0.63 -0.44 0.9 -0.38 0.21 -0.23 -0.24 -4.86 -2.75 -3.15 -0.41 -0.31 -2.95 -0.21 -0.23 -0.02 0.03 0.08 -0.12 -0.0
-0.07 0.4 0.53 0.09 0.35 0.35 0.21 -0.37 0.15 -0.01 0.23 -0.02 0.22 0.78 0.95 -0.3 1.18 0.81 -1.16 -9.54 -2.81 -3.59 0.37 -1.45 -3.11 -1.86 -0.8 -0.51 0.54 0.81 -0.22 -0.41

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.