Heatmap: Cluster_2 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-0.69 -0.2 -0.37 -0.32 -0.1 0.27 -0.39 -1.4 -0.9 -0.82 -0.61 -1.09 2.1 -0.32 0.33 -0.6 0.43 0.63 1.56 - - - 0.73 -0.67 1.48 -1.81 -1.47 -0.56 0.01 0.19 -0.02 0.07
Smo107419 (CYP78A7)
0.11 -0.03 0.03 -0.23 -0.76 0.03 0.03 -0.02 0.5 0.88 0.49 0.43 1.79 0.98 0.89 1.49 -2.12 -3.44 0.56 - -5.4 - -0.42 -0.41 -4.87 0.61 -0.08 -0.64 -1.31 -1.07 -1.3 -0.76
-0.42 -0.87 0.16 -0.85 -0.27 0.08 -0.75 -0.09 -0.59 -0.54 -0.15 -0.15 2.23 1.11 0.96 0.86 -1.43 -4.6 2.03 -2.41 -2.15 -4.74 0.32 0.31 -0.63 -0.29 -0.39 -0.26 -1.62 -0.88 -1.71 -2.39
Smo110333 (AUR3)
-1.27 0.69 - - -0.7 -0.03 -1.12 -1.05 - - - - 2.16 1.49 2.1 -1.14 - -0.86 3.72 - - - -1.34 -1.09 - - - -1.14 -1.87 -3.74 - -
Smo111212 (HK1)
-0.18 -0.18 0.12 -0.07 0.23 0.04 0.05 0.2 0.41 0.87 0.56 0.16 1.97 0.53 0.09 1.43 -1.35 -1.25 1.83 - - - -1.48 -1.21 -4.14 -0.28 -1.32 -2.23 -0.87 -0.31 -0.99 -1.22
-0.93 -0.0 -0.24 0.27 0.42 0.32 0.25 -0.43 -0.98 0.01 -0.84 -0.81 0.9 -0.36 0.43 0.83 -0.29 -0.86 2.18 - - - 0.84 0.6 -1.03 -0.99 0.2 0.55 -0.13 0.07 -1.28 -1.7
-0.52 -0.58 -2.78 -0.2 -0.67 0.13 -0.38 0.4 0.53 0.67 -0.07 0.03 1.36 0.37 0.07 1.77 -0.85 -0.29 1.25 - -3.24 - -0.72 0.74 -2.05 -0.45 0.07 -2.31 0.19 0.36 -0.18 -0.32
-0.11 -0.63 -0.17 -0.23 -0.17 -0.44 -0.2 0.16 0.23 0.33 0.32 -0.03 0.46 0.72 0.86 0.58 -0.64 -0.46 1.88 -1.74 -3.19 -0.26 -0.11 0.14 -1.74 -0.12 -0.55 -0.3 -0.44 -0.36 -0.59 -0.22
-0.25 -0.56 -1.09 -0.68 -0.32 -0.89 -1.02 -0.69 -0.68 -0.46 -0.6 0.05 1.25 -0.81 -0.09 1.86 -1.57 -2.14 2.53 -4.13 -0.04 -4.19 -1.49 -1.32 0.16 0.87 0.2 0.84 -0.62 -0.74 -1.08 -0.77
Smo230116 (TUB6)
-0.63 0.82 -1.18 -0.21 -0.3 -1.54 -2.19 0.04 -1.62 -1.61 -1.86 -1.0 1.47 -0.68 1.35 2.81 - -3.09 3.06 -1.26 - -0.6 -2.61 -1.46 -1.73 -2.34 - -0.54 -2.9 -3.74 - -
0.64 0.88 0.53 -0.01 -0.19 -0.33 -0.43 -0.77 -0.41 -0.33 -0.09 -0.09 1.05 0.85 -0.25 1.39 -0.27 -0.66 1.64 -1.78 -2.7 -2.54 -0.64 -0.16 -0.22 -0.82 -1.2 -0.98 -0.35 -0.03 -0.42 -0.34
Smo232427 (MAN7)
-0.1 0.21 -0.01 0.43 0.38 0.36 -0.36 -0.17 0.25 -0.09 -0.11 -0.22 1.66 0.89 -0.25 1.67 -0.08 -0.31 1.75 - -4.64 - -0.52 0.01 -0.75 -1.44 -1.5 -1.9 -1.09 -0.52 -1.26 -1.53
Smo232533 (BAM1)
-0.69 -1.05 -2.0 -1.09 -0.12 -0.67 -0.84 -0.2 -0.39 -0.67 -0.47 -0.78 1.73 0.62 1.57 1.82 -2.27 -2.65 2.97 - - - -2.89 -1.21 -2.48 -0.7 0.27 0.44 -2.7 -1.82 -1.94 -1.47
0.42 0.77 -0.1 -0.01 -0.16 -1.09 -0.77 -0.82 -0.64 -0.58 -0.31 -0.05 1.29 0.8 -1.22 1.92 -0.7 0.24 1.53 -4.86 -1.93 -5.76 -0.13 0.44 -0.59 -0.35 -1.26 -0.7 -0.51 -0.11 -0.38 -0.18
Smo38500 (DREB2)
- -0.45 - - - - 1.4 - - - - -1.42 2.91 0.51 0.4 1.58 -1.47 - 3.4 - - - 0.51 -0.27 - - - - -1.39 -0.86 -0.83 -1.5
-0.76 -1.44 -1.02 -1.63 -1.04 -0.91 -2.12 -1.88 -2.04 -1.95 -1.75 -1.65 0.25 2.43 1.66 1.14 -1.3 -0.29 2.93 -4.05 -2.8 -1.88 -0.81 0.22 -1.42 -2.67 -1.65 -2.15 -0.66 -0.25 0.17 -0.05
-3.67 - -3.08 -0.85 - -1.01 -0.46 0.44 -0.65 -1.38 -1.75 - -0.41 2.11 0.28 1.65 -0.92 -0.41 2.85 - - - 0.07 -0.47 0.11 -0.31 0.42 1.11 -1.42 0.36 -2.43 -1.16
-0.22 -0.46 -0.0 -0.37 -0.62 -0.46 -0.24 -0.13 -0.35 -0.27 0.02 -0.19 2.06 0.71 -0.06 1.28 -2.4 -2.71 -0.08 -5.15 -4.83 0.55 -0.97 -0.18 1.04 1.47 0.33 0.27 -1.56 -1.35 -2.19 -1.47
-1.26 -0.58 -1.43 -0.8 -2.08 -0.3 -1.07 -2.2 -1.37 -1.86 -2.05 -2.48 2.78 1.08 1.01 0.92 -0.15 0.21 2.0 -3.22 -1.04 - 0.11 -0.21 0.09 -2.95 -0.46 -1.57 -0.53 0.28 -0.78 -0.14
-4.37 -4.12 -5.4 -3.17 - -2.91 -5.7 -4.96 -4.06 -1.66 -3.54 -3.1 -3.41 2.59 1.78 0.74 -3.22 0.18 3.63 - 0.2 - -4.8 -1.13 -3.5 - -0.1 -3.33 -2.2 -0.15 -1.55 0.94
0.02 -0.1 0.29 -0.75 -0.29 0.03 -0.8 -0.52 0.17 -0.54 -0.41 -0.4 2.26 0.77 0.62 1.83 -1.72 -2.22 1.71 -5.09 - - -2.29 -1.41 -1.19 0.66 -0.08 0.55 -1.5 -1.02 -2.0 -1.81
0.09 0.18 0.27 0.09 -0.01 0.25 0.03 0.0 0.49 0.53 0.49 0.43 1.62 0.03 0.14 1.35 -1.66 -1.82 0.47 -3.34 - -3.4 -1.74 -0.79 -0.27 1.17 -0.15 0.51 -1.87 -1.04 -1.27 -1.5
0.08 -0.15 -0.22 -0.22 -0.7 -0.26 0.0 -0.09 -0.03 0.49 0.07 -0.03 0.83 -0.35 0.38 0.84 -0.19 -0.01 1.74 -2.25 -3.4 -3.83 0.14 0.28 -1.63 -0.29 -0.34 -0.18 0.09 0.22 -0.04 -0.08
0.12 -0.42 -1.21 -1.08 -2.51 -2.02 -1.87 -2.11 -1.81 -0.61 -0.56 -0.34 2.42 1.66 -0.42 1.77 -2.74 -1.34 3.09 - - -3.49 -0.14 -0.01 -2.81 -0.64 -2.3 -1.94 -2.09 -1.55 -2.71 -2.25
-1.37 -3.39 -3.59 -2.44 - -1.57 0.28 -0.13 -3.56 -2.57 -1.12 -2.32 -0.98 2.76 -1.15 1.94 -1.46 -1.78 3.68 - - - - - -1.11 -2.16 -1.76 0.06 -2.2 -1.54 -3.17 -3.22
0.36 0.49 0.53 0.3 0.5 0.22 -0.02 -0.3 0.15 0.1 -0.01 -0.2 0.9 0.28 0.13 0.82 -0.44 -1.12 1.8 - -3.62 -3.04 -0.19 -0.32 -1.39 -0.29 -0.04 -0.04 -0.57 -0.19 -0.83 -1.08
-0.88 -1.25 -2.61 -0.33 -0.4 -2.36 -1.77 -1.86 0.41 0.93 -2.73 -1.5 1.74 0.4 2.13 1.68 -0.95 -3.87 1.67 -0.79 -2.93 - -0.72 -0.36 0.69 0.17 -0.73 0.39 -1.41 -0.64 -1.09 -0.87
-2.32 - -0.04 - -1.37 -1.41 -1.42 -0.25 -0.21 0.25 -1.01 -1.73 2.28 0.48 2.25 1.59 -2.6 -1.74 1.0 0.19 - -0.82 -2.39 -3.85 1.13 -0.49 0.6 0.81 -1.18 -0.62 -2.63 -3.09
-0.92 -0.68 -1.06 -0.62 -0.64 -0.72 -0.79 -0.7 -0.22 -0.48 -0.71 -0.61 2.53 -0.17 0.4 1.69 -0.72 -0.07 1.79 0.64 -2.69 -1.6 -1.95 -1.93 -1.31 0.61 0.04 -0.03 -1.28 -1.09 -1.19 -1.38
-0.98 -0.56 -1.34 -2.07 -0.88 -0.9 -0.46 0.75 -1.3 -1.34 - 0.21 2.84 - - 3.1 -0.77 - 2.69 - - - -1.76 - - - -0.72 - -2.04 - -0.93 -1.79
0.25 0.1 -0.13 -0.15 0.2 0.1 -0.45 -0.23 -0.27 -0.03 -0.23 -0.2 1.19 0.86 -0.92 0.9 -1.34 -0.25 2.33 -2.96 -2.89 - -0.33 -0.28 -1.28 0.54 0.21 0.27 -0.9 -0.82 -1.71 -1.64
-2.62 -2.72 -0.7 -1.04 -1.84 -0.85 -1.63 -0.61 -2.4 -2.85 -3.25 -1.22 3.59 1.38 1.5 -2.14 -3.9 -1.18 2.94 - - - - - -2.03 - -1.15 -0.27 -2.11 -4.02 -3.07 -3.15
-0.43 0.66 -0.73 -0.63 -1.43 -0.46 -0.22 0.07 -0.04 0.76 0.93 -0.57 1.82 0.37 1.09 1.61 -1.55 -1.55 1.17 - -3.23 - -2.13 -1.79 - 1.27 0.36 0.56 -1.71 -1.96 -1.79 -0.71
0.5 -1.07 1.15 -0.3 -3.87 -0.74 -0.87 -0.29 -1.65 -0.31 0.34 -0.26 2.6 -0.38 0.53 1.81 -0.59 -2.31 1.8 - - - -0.8 -0.83 -4.34 0.43 -0.57 -0.22 -0.05 -1.85 -1.36 -
Smo421707 (CHR25)
-1.48 -0.84 -1.11 -0.67 0.87 -0.17 0.2 -0.03 -0.23 -1.14 -0.68 -0.07 0.85 0.39 1.51 1.74 -1.54 -2.25 1.83 - - - -0.87 -0.37 - 0.79 0.69 1.51 -1.8 -1.19 -1.42 -2.11
-0.23 -0.15 0.03 0.33 0.58 -0.25 0.07 0.51 0.37 0.44 -0.18 0.27 0.8 0.94 1.27 1.32 -1.49 -2.32 1.15 -2.65 -3.18 -2.87 -1.1 -1.09 -0.67 0.56 0.4 0.41 -1.39 -1.57 -2.56 -3.2
-1.69 -1.58 -2.03 -1.79 -1.01 -1.71 -0.97 -1.24 -1.77 -1.04 -0.97 -1.35 1.46 0.42 -0.96 2.23 -1.53 0.44 2.78 - -1.21 -6.42 -1.63 -1.44 -1.41 0.32 0.38 -0.11 -0.38 -0.56 0.56 0.72
Smo425250 (CCC1)
-0.36 -0.71 -0.31 -0.27 -0.11 -0.44 -0.15 -0.56 -0.49 -0.11 -0.51 -0.61 0.45 0.82 -2.76 2.38 -1.31 -1.16 2.87 - -4.02 - -2.73 -0.7 -1.11 -0.6 -0.02 -0.41 -1.05 -0.17 -1.6 -0.54
-0.16 0.07 - -1.25 - - - -1.03 - - - -0.96 2.95 0.11 0.28 0.57 0.4 - 3.14 - - - -0.72 - - - 0.68 - 0.17 -0.66 0.88 0.21
0.78 -0.91 -0.89 -1.12 -0.74 -2.19 -1.72 -0.77 -0.95 0.2 0.76 0.97 2.14 0.42 -1.13 0.65 -4.33 -5.65 0.34 -2.97 -0.71 1.29 -3.12 -1.15 1.27 2.04 -0.88 -2.16 -1.89 -1.78 -0.78 -1.27
-1.19 - - 0.27 - - 0.2 - - - - 1.11 2.76 - - 2.46 - - 3.63 - - - 0.25 - - - - - - - 0.29 -
-0.64 0.06 -0.09 0.15 -0.26 -1.09 -0.25 0.22 -0.83 -0.69 -1.71 -1.28 1.51 -0.37 0.15 1.42 0.73 -2.34 2.59 - - - 0.01 0.38 - -0.55 -0.6 -0.1 -0.22 0.3 -1.1 -0.65
-0.05 -0.88 0.24 -0.16 0.36 0.5 -0.14 -0.35 -0.01 0.3 0.26 0.54 1.8 0.73 0.48 1.46 -1.72 -2.43 1.37 - - - -0.1 0.68 -1.1 0.12 -0.51 0.02 -1.88 -1.72 -2.55 -2.0
Smo437460 (SBT5.4)
-1.55 -3.2 -2.26 -1.45 -1.79 -1.84 -1.13 -2.0 -2.29 -1.48 -1.78 -2.13 -0.19 2.41 0.9 2.14 -4.25 -0.69 2.98 -0.88 -2.98 -0.14 -3.53 -1.43 -1.38 -0.72 -0.28 -0.76 -0.19 0.24 -1.39 -0.42
-1.17 -0.41 0.06 -0.07 0.09 0.45 0.02 -0.31 -0.45 -0.81 -1.12 -1.14 -0.55 2.03 1.72 0.22 -0.68 -1.06 1.58 -3.29 - 0.59 0.71 0.13 -0.85 -1.92 -0.5 -0.06 -0.63 -0.64 -1.25 -1.01
Smo449229 (PIP5K9)
0.68 0.68 0.38 0.22 0.2 -0.11 -0.52 -0.98 -1.17 -1.0 -0.84 -0.41 1.25 0.77 0.19 0.58 -0.08 -0.43 0.54 -0.01 -1.5 -0.88 -0.06 0.25 -0.91 -0.19 0.08 0.2 -0.42 -0.38 0.03 -0.4
0.33 -0.22 -0.68 -0.15 -0.41 -0.15 -0.43 -0.24 -0.43 0.6 0.13 0.19 0.9 0.1 0.09 1.33 -0.41 -0.22 1.28 -5.97 -5.36 - 0.41 0.76 -0.68 -0.23 -0.39 -0.9 -0.31 0.01 -0.01 0.51
0.5 -0.83 -0.7 -0.22 -0.11 -0.01 0.37 -0.7 0.09 0.59 0.23 0.37 0.12 -2.06 0.76 0.46 -0.28 -1.37 2.49 - - - 0.12 -0.48 - 0.55 -0.85 -2.26 0.13 -0.16 0.51 0.03
0.27 0.03 -0.09 -0.04 -0.11 -0.2 -0.18 -0.09 0.06 0.07 0.3 0.2 1.13 0.28 -0.3 0.78 -0.67 -0.67 1.79 - -4.57 -8.42 -0.48 -0.01 -1.89 1.09 0.02 -0.02 -0.36 -0.31 -0.65 -0.43
-1.45 -1.8 -0.78 -0.96 -0.33 -0.54 -0.81 -1.05 -0.35 -0.52 -0.66 -0.76 0.65 1.43 0.98 0.93 -0.07 0.53 2.81 -4.33 - - -0.62 -0.64 -2.69 -1.06 -0.56 -2.16 0.13 0.47 -0.15 0.24
-0.31 -0.4 -0.45 -0.62 -1.16 -0.69 -0.39 -0.09 -0.47 0.11 -0.2 -0.01 1.21 1.18 -0.16 1.88 -1.2 -1.53 2.14 -1.89 -3.65 -3.63 -1.66 -1.87 -3.25 0.76 0.58 0.28 -0.53 -0.33 -0.83 -0.53
-3.77 - - -2.31 - - - - - - -0.66 - 0.99 0.33 -1.94 2.73 0.51 1.04 3.4 - - - -2.76 - - -0.13 0.62 -0.02 0.2 0.37 - -0.11
-1.91 -1.4 -1.62 -1.29 -1.86 -1.51 -1.49 -1.94 -1.66 -1.65 -1.92 -1.98 2.88 1.86 1.7 1.51 -0.51 -1.19 1.79 - 0.09 - -0.15 0.13 -0.47 -2.65 -2.41 -1.94 -0.7 -0.24 -1.82 -1.41
Smo76257 (GME)
-2.01 -1.3 -2.84 -3.31 -0.74 -3.52 0.44 -0.72 -1.69 -1.71 0.7 -0.05 -1.25 -3.83 2.1 1.94 - - 2.86 - - - -1.43 -1.88 - 0.9 - 2.56 -1.96 -1.96 -2.0 -2.08
Smo77371 (CUC2)
-3.36 -3.03 -5.59 -3.43 -2.92 -3.63 -3.73 -3.91 -1.31 -4.49 -5.09 -4.28 2.57 0.06 -4.86 2.96 -0.67 -2.52 3.3 -3.11 - - -0.64 0.19 -1.68 -3.05 - -2.93 0.43 -0.46 -1.15 -1.6
-0.8 -0.72 -1.0 -0.52 -0.44 -0.48 -1.33 -1.43 -1.3 -2.21 -1.64 -2.05 2.46 1.52 0.94 0.4 -0.57 -1.23 1.47 -0.89 0.48 -6.03 -0.58 -0.62 1.43 -3.1 0.27 0.24 -0.96 -0.55 -1.13 -0.75
Smo92194 (CHIA)
-0.07 -0.08 -0.02 -0.12 -0.02 -0.51 -0.54 -0.65 -0.02 -0.46 0.13 -0.45 1.24 0.85 -0.18 0.97 -1.01 -0.96 1.75 -3.26 -1.38 -5.43 -0.18 -0.02 -0.1 0.55 -0.25 -0.09 -0.87 -0.57 0.09 0.53
Smo98074 (VIIIA)
-0.54 -0.54 -0.06 0.01 0.38 -0.29 -0.56 -0.45 -1.14 -0.8 -0.58 -0.77 2.0 0.9 0.83 1.38 -1.45 -1.82 2.23 -2.49 -6.6 -2.25 -1.24 -1.82 -2.25 0.16 0.58 1.18 -1.88 -1.71 -2.08 -2.04
0.15 0.07 -2.32 0.19 -0.79 -0.67 -0.48 -0.59 -0.1 0.97 -1.52 -0.23 0.61 -1.37 1.76 1.71 -1.21 -1.77 2.2 -2.46 - - 0.06 -0.21 -2.46 0.13 -0.64 -2.28 0.3 0.17 -1.52 0.0
Smo98222 (CUL3)
-0.15 0.37 0.58 0.58 0.56 0.41 0.01 0.2 -0.26 0.29 0.33 -0.06 1.12 0.96 0.5 1.3 -0.73 -1.3 0.96 -3.55 - -5.46 0.08 -1.02 -2.58 0.32 -0.02 -0.26 -0.88 -1.07 -1.8 -1.28

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.