Heatmap: Cluster_1 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-0.99 -1.17 -1.38 -1.47 2.64 - -0.14 -1.36 0.55 - - - 0.13 - - 0.16 -1.0 1.53 2.17 - - - 1.1 1.31 1.1 - - 1.28 0.59 -0.97 - -
Smo103375 (FUC1)
- - - - 1.63 -0.77 0.99 -0.27 0.28 - 1.84 -1.01 -0.04 - -0.09 -0.05 0.99 1.96 1.15 - - - 0.84 -1.08 - - 1.31 - 1.23 -0.16 - 0.31
-2.37 -2.44 - -0.65 1.77 0.9 0.53 0.82 0.12 -0.48 -0.51 -1.26 - -2.97 0.57 - -0.55 1.3 -3.2 - - - -2.13 - 0.18 -1.87 2.71 2.44 -2.11 -0.54 -3.14 -3.2
-0.91 -1.47 - 0.32 1.37 0.28 1.85 1.65 0.59 0.91 1.27 -0.55 -0.22 -1.13 - - - 0.1 -1.36 - - - -1.22 - 2.16 - 1.48 - -0.33 0.66 - -
- - - - - - - 0.49 0.81 - 2.18 1.79 - - - - 0.98 - - - - - - 0.78 - - 2.31 3.12 - - 0.83 0.79
0.87 0.36 0.99 0.67 2.32 1.61 0.11 1.3 -0.91 -1.36 0.53 -0.34 0.23 -1.05 -1.36 -1.67 -0.8 - 1.57 - - -1.11 0.26 -1.29 -0.77 -1.41 - - -0.29 -1.88 -0.88 -
-0.14 0.59 2.02 - 1.86 - 0.67 0.4 - - 2.83 0.69 0.82 - - - - - - - - - - 0.61 - 1.91 - - - - 0.69 0.65
0.31 0.94 -0.4 -0.38 -8.28 -2.78 1.62 -0.37 -0.13 -0.77 1.09 -0.3 - -0.06 -3.35 -2.01 -0.35 -0.28 0.17 -1.6 -1.15 - 0.76 2.09 -0.61 -0.07 0.67 -0.5 -0.51 0.09 0.0 0.5
0.04 0.52 0.77 1.04 1.53 1.27 0.38 -0.25 -0.07 0.75 0.33 -0.31 -3.89 - - -2.54 -2.78 -6.63 0.8 -4.62 0.94 - -4.47 -1.9 1.35 -0.18 -0.4 -0.73 0.0 0.78 0.1 -0.65
Smo403247 (PUR4)
- - - - 3.64 - - - - - - - - - - 2.22 - - 3.9 - - - - - - - - - - - - -
- - - - 2.59 - - - - - - - - 1.89 - 1.91 - 2.3 - - - - - - - 3.76 - - - - - -
- 2.38 -0.86 - 3.04 0.95 2.25 - - - 1.47 0.45 - - - - - - -0.44 - - - - - - - - 2.69 - - - -
- - - - 4.3 - - - - - - - - - - - - - - - - - - - - - 3.63 - - - - -
- - - - 4.3 - - - - - - - - - - - - - - - - - - - - - 3.63 - - - - -
- - - 1.62 2.52 - - 2.92 - - - 0.0 0.69 - 3.05 0.85 - - 0.54 - - - - - - - - - 0.57 - - -
- - - - - - -0.34 -0.46 -0.55 0.44 1.86 - 1.56 - -0.86 - 0.83 - 1.42 - - - -0.03 - 1.9 - - - -0.15 - 2.81 2.08
- - - - - - - - - 2.3 3.41 2.48 - - - - 2.48 - - - - - - - - - - - - 2.41 - -
- - - - - - - - - - 2.15 - 2.57 - - - - - - - - - - - - 2.61 - 3.68 - 1.44 - -
-1.98 -1.2 1.73 1.97 2.3 1.6 1.4 -0.45 - - - - - -0.2 1.81 -0.88 -1.03 - 2.77 - - - - - - - - - - -1.02 - -
-0.26 1.1 1.25 -0.44 1.75 -0.4 0.15 -2.45 -2.13 -0.07 - -0.2 -0.86 - 1.0 -1.68 0.43 0.98 2.54 - - - - - 0.01 - -0.83 - 1.54 -0.4 -0.03 -2.09
0.15 - -0.51 - - - - 0.05 - -1.53 1.38 -1.36 - -1.22 - -1.23 -0.39 -0.57 0.93 0.65 - - 1.73 1.42 1.69 0.88 1.74 1.1 -0.33 0.67 -1.35 -0.4
- - - - 3.54 - - - - - - - - - - - - - 4.0 - - - 2.14 - - - - - - - - -
- - - - 3.1 2.06 0.94 - - 2.66 - 2.11 - - 1.0 - - - - - - - - - - - - 2.22 - - - -
-1.11 0.19 0.93 1.4 2.06 0.72 -0.05 0.24 -0.33 -1.64 0.22 0.02 -1.93 -1.39 1.38 -2.35 -1.56 0.97 1.44 - -0.33 - -1.27 -2.57 -1.85 -1.96 -1.59 1.67 -1.15 -2.5 -4.15 -
- -1.47 - -0.75 1.9 -1.42 - 0.41 - -1.72 - 0.37 - - -0.43 -1.12 0.43 0.27 1.05 - - - -0.23 - - 1.69 1.75 2.64 0.73 1.31 - -1.39
-1.75 0.17 - 0.37 3.4 0.38 - 2.24 - -0.01 1.27 0.24 - - - - -0.18 - 1.34 - - - - - - -0.23 -0.02 - 0.68 -0.23 -1.26 -
-0.72 0.31 -0.43 0.92 0.99 0.62 0.98 0.46 -0.13 -0.55 -1.25 -1.74 -0.39 -0.01 -0.69 -0.36 0.48 0.19 0.59 -2.91 - - 0.65 0.79 -1.88 -3.96 0.84 1.01 -0.49 0.53 -0.9 -0.21
- 0.05 0.91 - - - -0.67 - -0.1 - 2.99 0.06 - - - - - - - - - - 2.3 3.2 - - - - -0.14 - 1.22 0.16
- -0.97 - -0.88 2.56 1.75 -1.0 - - - - -0.93 - - - - 0.27 0.36 2.72 - 1.48 - - - 2.0 - 0.6 1.42 - -0.84 - -
-0.33 1.11 -1.13 -0.1 1.17 1.02 0.52 0.75 -0.03 0.76 0.1 -0.47 -3.66 -2.28 -3.85 -0.36 -3.73 - -0.09 - -0.57 - -1.15 -0.48 1.14 1.87 1.32 1.45 -1.75 -2.03 -2.8 -3.94
-0.65 0.96 1.09 1.11 1.29 1.07 0.77 0.84 -0.43 -0.95 -0.82 -1.36 -1.41 -0.99 0.35 -1.97 0.91 -1.18 0.01 -0.78 - - -0.1 -0.79 - 0.15 0.43 1.07 -0.16 -0.34 -1.06 -1.64
-0.64 - - - 2.7 -0.25 - - - -0.45 -0.06 2.3 3.38 - - -0.47 - 0.78 - - - - - 1.27 - 0.66 - - - - - -0.86
-2.66 -0.25 - 0.5 2.74 - 0.41 - - -0.42 0.97 - - - 0.78 0.01 - - 2.9 - - - 0.95 - 1.68 - - - 0.79 -0.09 - -0.16
-3.28 -0.86 - - 2.13 - -1.61 - 0.85 0.03 0.36 - - - - - - - 2.91 - - - 0.38 1.28 1.07 - - 1.48 1.53 - 1.54 -0.77
- - - - 3.52 - 2.84 1.22 - - - - - 1.63 - - - 0.63 2.68 - - - - - - - - - - - - -
-0.95 - 0.76 - 2.92 - - 0.3 1.32 - - 0.63 - - - - - 2.12 2.2 - - - - 1.69 - - - - 0.59 1.71 - -
-0.36 -2.01 0.5 0.03 1.59 -1.2 - 0.73 -2.76 - 1.46 -0.66 1.9 -10.86 -1.41 1.59 - 0.15 1.91 - - - -0.24 -0.34 - 1.5 - 1.56 -2.35 - -2.33 -3.3
0.39 -0.36 -1.22 -1.52 - - 1.53 -2.2 - -0.08 1.23 -1.87 -1.85 -2.02 - -1.65 1.09 -1.25 1.2 - - - 1.48 -0.41 - 1.22 1.01 0.44 0.64 0.66 1.66 0.32
- - - 1.2 - - - - 1.63 1.31 3.42 - - - - - - - 3.33 - - - - - - - - - - 1.75 - -
0.9 0.77 0.27 1.25 0.84 0.44 0.37 0.42 1.37 -0.2 0.74 0.38 -0.53 -0.7 0.52 0.71 - - 0.14 - - - 1.1 0.46 0.59 -1.78 -1.09 - -0.82 -2.51 -2.91 -0.96
- 0.82 - - 2.92 - - - - - - - 0.9 - - 1.11 - 3.16 - - - - - 0.73 - 2.15 - - - 0.85 0.83 -
-3.42 - - -0.41 2.07 -1.84 1.15 -1.3 -1.98 0.36 0.0 -0.4 - -1.04 -1.01 - 0.72 -0.48 -0.33 - -0.56 - -0.98 - - -0.78 1.73 2.93 0.65 0.67 -1.95 -1.01
-1.12 - - 0.33 2.74 -0.24 0.68 - -0.55 -1.7 - 1.28 - - - 0.2 - - 1.49 - - - 0.03 - - - 2.24 3.01 - - - -
Smo426343 (PWP2)
-0.58 0.7 - - 3.33 1.12 0.41 0.61 0.33 1.95 0.65 0.36 - - 0.66 -0.91 - - - - - - -1.12 - 0.96 - 0.32 - -1.2 - - -1.15
0.2 - 1.32 -0.83 2.09 - 2.18 0.44 - - - - - - 0.82 -0.23 - 1.84 2.74 - - 1.13 - - - - 1.38 - - - - -
- 1.33 - - 4.43 - - - - - - - - - 0.85 1.67 - - - - - - - - - - - - - 1.54 - -
-0.68 -0.09 1.19 0.48 1.85 1.19 1.15 0.65 -0.23 0.17 1.01 0.28 - -2.06 -2.19 - -1.22 -0.27 0.78 - - - -1.21 -0.85 0.95 0.3 0.53 0.18 -1.03 -1.15 -1.27 -1.48
- - - - 3.55 - - - - - - - - - - - - - - - 3.15 - - - - 3.51 - - - - - -
-1.19 -1.27 -0.48 1.69 2.52 1.88 -1.2 - 0.72 0.18 1.1 1.14 - - - - - - - - - - 1.6 0.59 1.0 - - 1.18 -1.16 -1.02 -1.06 -
-0.99 0.35 - - 3.41 - - 0.21 - - 0.34 - - - - 0.82 - - 1.53 - - - - - - 3.2 1.72 - - - - -
-0.51 1.03 - - - - 1.04 -2.43 -0.16 - 1.72 1.07 - - - - 0.94 - -0.19 - - - 0.86 -0.25 - - 1.92 3.28 -0.17 -0.18 - -
0.42 - - - 4.46 - - - - - - - - - - - - 3.11 - - - - - - - - - - - - - -
-1.5 - - -0.4 1.19 - -0.11 - 0.04 1.33 2.92 1.22 0.18 - - - 0.15 2.02 2.61 - - - - - - - - - -0.11 - - -0.09
-0.36 -0.08 - 1.07 2.03 0.21 - - 1.33 - - -0.09 0.2 - - - 1.13 3.16 1.06 - - - - - - - - - 1.05 0.09 - 1.01
-0.23 - 0.26 - 4.29 - -1.81 1.74 - - 0.76 -0.4 - - -0.31 -1.69 0.74 - - - - - - - - - - - - - - 0.59
0.39 0.85 1.36 -0.8 2.71 1.35 1.22 1.3 -0.56 2.03 -0.7 -0.77 -2.44 -0.26 -17.39 -1.16 -2.66 - -2.32 - - - -1.69 -0.67 -2.42 - - - 0.72 0.12 -2.41 -
-0.69 - - - 3.04 -0.65 - -0.84 0.68 - - - - - - - - - 1.02 - - - -0.61 -0.48 2.94 2.0 1.98 - -0.66 -0.54 - -
- - - 3.3 - - -19.16 - - 1.03 3.6 - - - 0.74 - - 2.67 - - - - - - - - - - - - - -
- - - - - - - - - - 4.46 - - - - - - - 2.8 - - - - - - - - - -1.1 - 0.42 0.37
-1.08 - 0.51 -0.62 2.78 - 0.75 - -0.2 - - -0.34 1.31 -0.2 2.01 1.11 0.87 0.54 0.88 - - - -0.18 -0.06 - - - - - -0.11 0.86 -
0.63 - - - 1.82 2.25 2.24 - 0.38 - 2.47 - - - 0.78 - - - - - - - - 2.87 - - - - - 0.64 - -
-1.61 - -1.61 -1.73 1.17 -0.34 1.63 -0.46 1.42 -0.33 1.16 -2.44 - - -0.64 -0.38 -0.15 0.56 0.38 - - - -0.47 -1.56 -0.19 -1.57 0.99 -0.77 1.41 1.01 1.03 0.7
-0.57 0.85 -1.04 -0.06 1.37 0.58 -1.15 0.27 -0.0 -0.68 1.32 0.45 -0.48 -0.11 -4.17 -1.07 -0.46 -1.57 0.14 - - - -0.58 -1.48 0.79 1.45 0.61 0.97 0.15 -0.23 -1.02 0.08
-0.69 -1.7 0.39 - - - 0.41 0.57 - -22.81 1.38 -8.59 -0.8 0.31 -3.54 -2.63 0.91 0.72 -0.53 -1.07 0.68 -0.14 -1.92 -0.41 - 1.33 0.81 1.98 0.61 0.04 0.79 0.66
-0.69 -1.7 0.39 - - - 0.41 0.57 - -22.81 1.38 -8.59 -0.8 0.31 -3.54 -2.63 0.91 0.72 -0.53 -1.07 0.68 -0.14 -1.92 -0.41 - 1.33 0.81 1.98 0.61 0.04 0.79 0.66
-1.2 -0.57 -1.43 -1.52 2.04 -0.47 -2.15 -0.79 -1.09 -0.77 -0.72 -2.23 -0.57 -2.1 0.86 -1.97 0.1 -0.55 2.52 - 0.91 - -0.68 -1.25 1.93 -0.9 -0.59 - -0.62 0.1 0.78 -0.29
0.21 1.05 -2.53 0.87 0.98 -1.32 0.51 -0.09 - -1.12 -0.95 0.89 -0.91 -0.02 -1.79 0.61 -0.97 - 0.17 - - - -3.07 -0.36 0.57 1.76 1.32 1.91 0.14 -0.88 -2.99 -1.24
Smo97800 (KLU)
- - - - - - - - - - 2.14 1.21 -0.24 - - 2.19 - 0.42 1.64 - - - - - - 1.44 - 3.67 - - - -
0.2 -3.02 - -1.05 1.66 0.15 -1.35 0.5 -0.62 -0.76 -0.32 -0.38 -1.09 -0.39 -3.79 0.36 -0.57 1.48 -0.83 - - -1.85 -0.44 1.68 -0.32 0.57 0.71 0.02 1.73 -0.11 -0.98 -0.23
-0.29 2.53 1.31 -0.53 2.43 -1.25 -0.77 - -7.93 - - -0.53 - - - - 0.15 1.5 3.17 - - - - - - - - 0.65 -0.64 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.