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Heatmap: Cluster_33 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo104195 (BAS1)
 1.26 1.38 1.36 1.39 1.06 1.14 0.76 0.61 1.06 1.1 1.21 1.34 -5.47 -2.28 -3.3 -2.99 -3.0 -2.3 -1.61 - - - -1.76 -2.62 -1.43 -0.69 0.16 -0.19 -2.56 -1.96 -2.36 -3.65
0.62 1.5 1.7 1.24 1.05 1.2 1.3 1.07 1.18 1.04 1.02 0.8 - - - -5.21 -5.67 -7.46 -2.7 - - - - -3.8 -0.96 0.62 0.26 0.41 -5.22 -4.08 -6.29 -5.83
Smo111186 (GST8)
 0.3 0.59 0.58 0.47 -0.03 0.1 0.58 0.81 1.08 1.07 0.81 0.62 -2.49 -0.67 -0.92 -1.95 -0.79 -1.02 -1.27 -2.7 -0.51 -1.33 -0.81 -0.79 -0.75 0.71 0.58 0.67 -0.55 -0.73 -0.22 -0.59
1.36 1.79 1.98 1.37 1.23 1.49 0.87 0.94 1.04 1.0 1.01 0.65 - -10.48 -11.09 -6.32 -7.03 -2.21 -4.35 - - - -3.35 -0.97 -1.06 -1.65 -1.57 -0.88 -3.83 -2.67 -4.21 -3.86
1.31 1.52 1.49 1.41 0.8 1.53 1.17 0.58 1.36 0.69 0.98 1.09 - - -7.59 -7.5 -2.46 -1.91 -4.2 - -1.06 - -7.52 - -0.12 -2.21 -0.15 -0.62 -3.28 -1.99 -1.51 -3.08
0.87 1.21 1.15 1.16 1.35 1.32 1.09 0.88 1.07 0.92 1.01 0.52 -7.62 -8.05 - -4.61 -1.42 -2.66 -0.66 - - - -2.57 -2.51 0.06 -0.26 0.13 0.67 -2.32 -1.38 -3.12 -2.88
Smo158648 (RH8)
 0.38 0.55 0.43 0.37 0.49 0.59 0.41 0.41 0.39 0.42 0.31 0.19 -0.39 -0.2 0.19 -0.52 -0.68 -0.67 -0.57 -0.33 -1.14 -0.57 -0.75 -0.77 -0.2 0.18 0.5 0.65 -0.6 -0.56 -0.79 -0.75
Smo172546 (ATRZ-1A)
 0.24 0.39 0.45 0.51 0.62 0.79 0.57 0.58 0.68 0.54 0.43 0.35 -0.13 -0.83 -0.73 -0.14 -0.83 -0.39 -0.21 -0.28 -0.08 0.11 -0.43 -0.44 -0.18 -0.23 -0.56 -0.61 -0.75 -0.94 -0.84 -0.89
Smo227647 (ALDH4)
 0.55 0.61 0.64 0.57 0.52 0.49 0.56 0.63 0.85 0.89 0.75 0.68 -1.83 0.58 -0.72 -0.82 -0.05 -0.56 -0.71 -1.23 -1.94 -2.78 -0.78 -0.91 -1.28 -0.26 -0.25 -0.05 -0.27 -0.19 -0.54 -0.83
0.35 0.31 0.42 0.53 0.4 0.47 0.46 0.51 0.59 0.6 0.42 0.51 -0.84 -0.12 -0.17 -0.79 -0.74 -1.79 -0.75 -1.45 -1.09 -1.33 -0.8 -0.91 0.38 0.33 0.76 0.81 -0.87 -0.81 -0.48 -0.3
0.42 0.57 0.67 0.55 0.64 0.62 0.26 0.8 0.61 0.75 0.55 0.32 -0.24 0.49 0.26 -0.38 -1.06 -1.3 -0.49 -1.12 -0.95 -0.9 -0.66 -0.42 -0.82 0.09 0.24 -0.29 -1.29 -1.28 -1.09 -0.85
0.91 1.31 1.54 1.34 1.2 1.41 1.25 0.91 1.25 0.94 0.94 0.75 -6.52 -9.42 -7.91 -3.78 -4.49 -3.72 -1.94 - - - -3.69 -1.62 0.32 -0.39 -0.33 -0.24 -3.07 -2.5 -2.98 -2.61
0.99 0.69 0.12 0.65 0.11 0.56 0.78 0.73 1.31 1.04 0.47 1.06 -1.13 0.03 0.25 -0.94 -1.06 -2.97 -0.47 -5.68 -4.89 -4.98 -0.93 -0.93 -1.45 1.02 0.24 0.19 -1.3 -1.12 -2.15 -1.55
0.12 0.15 0.04 0.8 0.58 0.5 0.79 0.84 1.15 0.35 1.07 0.47 -4.14 -0.94 -1.05 -3.91 -1.75 1.01 -2.14 -4.74 0.29 -4.22 -1.92 -1.79 0.4 0.7 1.11 0.81 -1.62 -1.67 -1.82 -1.63
1.31 2.01 2.07 1.09 1.48 1.31 1.04 0.87 1.08 0.88 1.2 0.39 -7.11 -7.95 - -4.61 -5.7 -2.97 -3.7 -7.34 - -6.13 -3.92 -1.59 -1.34 -2.07 -1.96 -0.63 -3.56 -3.76 -4.06 -4.27
1.21 1.51 1.69 1.69 1.29 1.72 1.45 0.56 1.38 1.27 1.11 1.16 -7.95 -10.22 - -9.35 -6.98 - -7.92 -6.1 - - - -9.53 -1.57 -3.86 -2.37 -1.71 -5.9 -4.93 -6.56 -7.15
0.61 1.19 1.26 1.39 1.41 1.22 0.95 1.36 1.23 1.39 0.76 0.86 -0.85 -3.9 -3.9 -1.36 -1.98 -0.58 -2.33 -8.04 -6.9 -6.68 -0.92 -1.73 - -0.93 -1.69 -2.09 -2.06 -1.8 -1.63 -1.94
0.83 1.09 1.18 0.78 1.11 1.23 1.16 0.86 1.05 0.88 0.73 0.68 - - - -5.94 -1.37 -1.26 -1.55 - - -3.65 -2.25 -3.37 -0.08 0.0 0.94 0.86 -2.02 -1.53 -1.88 -1.81
Smo407843 (DEF2)
 1.25 0.93 0.52 0.59 1.03 0.88 0.93 1.4 1.33 1.41 1.47 1.16 -3.88 0.38 0.09 -4.05 -4.79 -3.4 -1.35 - -4.59 - -3.79 -3.47 -2.79 0.11 -1.22 -0.19 -2.84 -3.07 -3.32 -4.09
1.06 1.18 1.25 1.17 0.57 0.84 0.98 0.75 1.29 1.09 1.06 1.12 -6.8 1.18 -0.37 -7.62 -4.9 -4.76 -5.94 - - -4.62 -4.47 -5.16 -5.75 0.6 0.0 0.45 -5.33 -5.09 -5.59 -4.81
0.84 1.19 1.28 1.05 0.97 1.29 0.86 0.62 0.93 0.62 0.67 0.35 -1.26 -2.23 -2.48 -1.45 -1.88 -2.61 -1.64 0.03 -2.64 -0.97 -1.64 -1.38 0.12 0.01 -0.2 0.09 -2.04 -1.9 -1.89 -2.02
1.03 1.73 1.61 1.52 1.51 1.61 1.75 0.35 1.35 1.18 0.81 1.0 - - - -6.42 -5.58 - - - - - - - -0.92 -3.36 -2.31 -0.65 -5.53 -3.96 -5.58 -6.64
0.76 0.32 0.33 0.57 0.34 0.67 0.83 0.96 0.96 0.65 0.69 0.47 -1.96 0.02 -0.41 -2.14 -1.48 -0.14 -2.7 -2.49 -0.72 -6.56 -0.48 -0.37 0.22 -0.47 0.93 1.09 -1.63 -1.21 -1.8 -1.66
0.49 1.17 1.58 1.37 1.23 1.32 1.27 0.85 1.61 0.58 0.9 0.61 -7.75 - - - -5.55 - -5.28 - - - - - 0.39 -0.18 0.78 0.7 -5.13 -3.4 -4.56 -4.78
0.9 1.18 0.64 1.0 0.89 0.72 1.08 1.13 1.16 1.68 1.26 1.31 -5.05 -1.01 -0.47 -5.06 -2.86 -1.34 -1.75 - - - -1.98 -2.38 -1.25 -0.17 0.39 -1.5 -3.67 -1.3 -3.66 -3.31
0.54 0.5 0.27 0.52 0.55 0.58 0.6 0.93 1.18 0.95 0.97 0.86 -1.63 -0.24 0.19 -1.64 -1.39 -0.76 -1.24 - -1.12 -5.77 -1.61 -1.64 -0.26 0.37 0.57 0.48 -1.44 -1.3 -0.92 -0.56
1.15 1.65 0.84 0.97 1.01 0.87 1.15 1.15 0.58 1.47 0.51 1.48 - 0.6 0.47 - -3.72 - -3.8 - -3.49 - - -3.17 -2.01 0.41 -1.51 -0.27 -4.78 - -4.82 -4.9
0.71 0.58 0.39 0.44 0.21 0.44 0.35 0.6 0.6 0.62 0.47 0.65 -0.34 0.04 -0.68 -0.39 -0.48 -1.22 -0.13 -3.04 -2.93 -0.78 -0.21 -0.3 -1.03 0.5 0.45 0.58 -0.52 -0.75 -0.84 -1.0
0.72 1.34 1.62 1.37 1.3 1.36 1.12 1.1 1.35 1.01 0.9 0.74 -8.69 - - -6.93 -5.6 -5.72 -6.8 - - - -6.75 -3.72 0.5 -0.7 0.17 0.32 -4.8 -3.51 -5.42 -5.44
1.33 2.14 1.85 1.78 0.91 1.25 0.5 0.39 0.95 1.03 1.11 1.36 - -3.39 -7.94 - -2.73 -4.19 -1.14 - - - -6.97 - -3.86 -3.63 -0.6 -0.99 -3.81 -3.82 -4.73 -4.2
1.32 2.0 1.78 1.55 0.88 1.05 0.39 0.27 0.93 1.0 1.02 1.3 -4.14 -3.79 -5.42 -3.95 -0.89 -7.34 -0.53 - -4.92 -8.87 -6.0 -6.73 -2.04 -3.21 -0.04 -0.68 -2.08 -2.03 -2.49 -2.39
0.97 1.32 0.35 0.67 1.09 0.18 0.49 0.78 1.01 2.09 1.25 1.98 -4.52 -1.52 0.01 -4.5 -3.03 - -2.65 -2.03 -1.01 - -4.52 - -1.61 0.13 0.43 -2.01 -3.06 - - -4.76
1.04 0.84 0.42 0.63 0.79 0.66 0.69 1.04 1.29 1.37 1.26 1.22 -4.35 0.39 -0.3 -3.95 -5.24 -2.64 -3.19 -0.63 -0.2 -1.58 -4.59 -5.01 -0.85 0.17 0.29 0.01 -4.49 -5.02 -3.7 -4.25
1.18 1.19 1.51 0.87 0.91 1.08 0.63 1.08 0.83 0.81 0.95 0.7 - - - -3.5 -0.88 -2.05 -0.73 - 0.2 - -1.06 -1.88 -0.42 0.19 -0.83 0.23 -1.44 -1.51 -2.42 -2.9
1.05 1.22 1.34 1.26 1.18 1.15 1.11 1.35 1.12 0.81 1.27 0.9 -3.08 -0.64 -0.49 -3.12 -3.2 -2.81 -2.5 - - -3.68 -2.72 -2.9 -1.98 -0.42 -0.82 -0.23 -3.41 -2.91 -3.15 -2.92
0.58 1.3 1.45 1.23 1.17 1.45 1.37 0.8 1.36 0.82 1.11 0.47 -2.64 -3.32 -4.25 -2.18 -2.41 -1.86 -1.89 - - - -4.56 -4.08 -0.73 0.2 -0.38 0.27 -2.82 -1.67 -2.57 -3.56
0.66 0.97 0.41 1.05 1.28 0.74 0.86 0.81 0.7 0.55 0.55 0.53 -1.18 0.46 0.31 -1.14 -1.44 -3.96 -0.99 - -3.98 - -1.65 -1.55 -4.02 0.67 0.73 0.76 -1.51 -1.55 -2.12 -1.8
0.78 0.73 0.54 1.09 1.23 0.94 0.96 0.78 0.92 0.83 0.4 0.79 -3.63 -1.05 -0.87 -2.08 -1.67 -1.92 -1.98 - -1.29 -3.34 -2.52 -2.07 -1.86 0.32 1.14 1.35 -2.27 -1.61 -2.08 -1.95
1.12 1.22 1.43 1.52 1.38 1.45 1.01 0.76 1.1 1.07 1.39 1.2 -3.21 0.05 -1.11 -2.91 -3.94 -4.19 -3.73 -9.05 -6.3 - -4.35 -4.69 -5.64 -1.82 -0.77 -1.02 -3.41 -3.46 -3.78 -3.89
0.59 0.41 1.0 0.71 0.64 1.11 1.14 0.74 1.09 1.26 0.27 0.8 -2.75 0.15 0.44 -1.66 -2.45 -2.52 -2.21 - -0.72 -4.65 -2.71 -2.23 -0.33 0.6 0.76 0.53 -3.16 -3.69 -3.32 -2.42
0.7 1.21 1.74 1.41 1.37 1.69 1.49 0.56 1.16 0.31 0.94 0.34 -2.6 -3.67 -3.07 -2.61 -2.39 -2.21 -1.91 -2.81 -1.68 -1.47 -2.41 -1.84 -1.43 -2.05 -0.85 -0.83 -2.4 -1.7 -1.63 -1.87
0.66 1.08 1.64 1.32 0.74 1.54 1.36 1.08 1.45 0.97 0.88 0.52 -3.84 -3.34 -2.34 -3.67 -4.68 -3.63 -2.83 -1.54 -5.28 -4.43 -3.84 -3.27 0.28 -1.34 0.44 -0.07 -4.3 -4.11 -4.02 -3.85
0.53 1.14 1.14 0.98 0.93 0.94 0.68 0.1 0.46 0.39 0.58 0.46 -0.48 1.14 0.29 -0.46 -0.65 -1.31 -2.49 -7.3 -2.91 -3.43 0.2 -0.37 -1.1 -1.24 -0.64 -0.55 -1.33 -1.0 -1.36 -1.52
Smo423931 (FIM5)
 0.84 1.13 1.28 1.18 1.03 1.31 1.19 1.31 1.67 1.18 0.95 0.89 -4.2 -0.15 -0.38 -2.91 -4.51 -5.89 - -2.37 -1.99 -1.16 -4.65 -3.57 -2.07 -1.12 -2.17 -0.24 -4.03 -4.47 - -6.34
1.16 1.27 1.64 1.64 1.24 1.71 1.47 0.88 1.73 1.15 1.3 1.02 -9.48 -11.18 -8.31 -7.7 -5.66 -7.61 -7.11 - -1.99 - -8.05 -7.37 -2.12 -5.11 -3.82 -3.19 -5.1 -4.93 -6.01 -5.41
0.41 0.47 0.47 0.43 0.21 0.06 0.63 0.71 0.7 0.96 0.89 0.73 -1.57 -0.92 -0.48 -1.47 -1.37 -0.1 -0.87 -1.82 -1.41 -1.37 -1.07 -1.19 -0.13 0.92 0.96 0.82 -1.38 -1.25 -1.17 -0.9
0.51 0.8 0.83 1.38 1.41 1.32 1.35 1.68 1.34 0.96 0.78 1.16 - -1.56 0.04 - -4.6 - - - - - - - - 0.65 -0.3 0.4 - - - -
1.2 0.98 0.35 0.79 0.02 0.6 0.26 0.88 0.79 1.43 1.04 1.59 -1.83 0.86 -0.47 -2.24 -3.66 -3.3 -2.49 -3.57 -2.45 - -2.71 -3.41 0.01 1.31 -0.37 -0.2 -3.74 -3.25 -2.71 -1.73
0.8 1.21 0.89 1.0 0.49 1.12 0.86 0.54 1.19 0.92 0.73 1.22 -4.44 0.68 0.14 -3.55 -4.15 -1.79 -6.57 -0.87 -0.28 - -3.51 -2.72 -0.85 -0.74 -0.64 1.25 -5.07 -4.98 -5.02 -
Smo429802 (CAF)
 1.15 0.74 0.08 1.02 -1.02 0.72 0.34 0.7 0.49 1.46 1.2 1.1 -1.44 -1.19 -1.46 -1.39 -1.73 -1.81 -1.86 -2.78 -0.81 0.24 -2.79 -1.5 0.8 1.51 0.34 -1.36 -3.86 -3.46 -3.03 -3.91
Smo430939 (RAD5)
 0.65 0.54 0.62 0.44 0.94 0.65 0.62 0.97 1.03 1.08 1.0 0.75 -1.44 -0.65 -0.17 -1.53 -1.89 -1.53 -1.42 -1.77 -2.27 -1.56 -1.59 -1.49 -0.74 0.89 0.5 0.59 -1.69 -1.83 -1.98 -1.8
Smo431234 (FUC1)
 0.58 0.74 0.6 0.65 0.79 0.65 0.9 0.66 0.87 0.87 0.75 0.65 -1.36 -0.05 0.02 -1.27 -1.58 -1.66 -0.88 -2.29 -0.16 -0.05 -1.08 -1.15 -0.35 0.33 -0.08 0.18 -1.79 -1.91 -2.1 -2.07
0.93 0.95 0.84 0.63 0.97 0.91 0.98 0.83 0.86 1.18 1.05 0.91 -2.93 0.4 0.06 -2.24 -1.16 -2.85 -1.12 -1.65 -1.78 -2.38 -1.04 -2.03 -2.27 -0.04 -0.31 -1.02 -1.66 -1.11 -1.37 -1.91
0.68 1.39 1.43 1.38 1.44 0.99 0.73 0.84 0.65 0.62 0.56 0.27 -1.36 1.09 -0.23 -1.39 -1.93 -3.81 -2.29 - - - -1.33 -1.3 - -1.56 -0.35 -1.12 -1.39 -1.38 -1.43 -0.48
0.88 0.87 0.74 1.27 0.85 1.09 0.58 1.01 1.2 1.08 1.3 0.97 -3.85 -0.14 -0.08 -2.97 -4.24 -3.13 -2.98 -1.27 -1.6 - -3.9 -2.62 -1.4 0.7 0.05 0.44 -4.05 -3.49 -4.66 -3.91
0.61 1.12 1.11 1.03 0.84 0.72 0.49 0.22 0.45 0.51 0.62 0.56 -0.65 1.17 0.26 -0.51 -0.58 -1.5 -2.3 -8.05 -4.75 -4.16 0.24 -0.26 -0.38 -1.27 -0.72 -0.56 -1.41 -1.04 -1.2 -1.39
0.43 0.32 0.25 0.57 0.51 0.46 0.7 0.56 0.64 0.75 0.54 0.45 -2.35 0.36 -0.1 -2.33 -1.05 -1.59 -0.95 -2.0 -1.5 -1.43 -1.06 -1.68 0.16 0.62 1.06 1.19 -0.74 -1.02 -1.03 -1.05
Smo441295 (WLIM1)
 0.59 0.63 0.68 0.78 0.55 0.65 0.68 0.93 0.73 0.95 0.98 0.81 -0.92 1.0 0.33 -0.9 -1.49 -3.18 -1.4 -4.92 -1.48 -1.98 -0.76 -0.73 -0.48 -0.32 -0.2 -0.28 -1.49 -1.37 -1.32 -1.27
Smo442783 (FUC1)
 0.53 0.3 0.48 0.43 0.04 0.43 0.47 1.26 1.22 1.05 0.99 1.02 -1.14 -0.37 -0.24 -0.81 -0.97 -4.15 -0.8 -3.47 -2.28 -0.55 -0.81 -0.88 -1.45 0.45 0.24 -0.15 -0.88 -0.92 -0.64 -0.7
1.2 1.71 1.76 1.51 1.12 1.65 1.27 0.67 1.47 1.01 1.31 1.1 - - - -8.8 -7.96 -7.29 - - - - - - -6.88 -4.15 -1.47 0.08 - - - -
0.13 0.31 0.39 0.38 0.55 0.48 0.46 0.6 0.63 0.71 0.59 0.41 -0.37 0.23 -0.21 -0.53 -0.64 -0.21 -0.23 -0.82 -0.57 -0.85 -0.39 -0.35 -1.44 -0.11 -0.28 -0.39 -0.63 -0.53 -0.21 0.01
Smo445084 (PMA)
 0.69 0.67 0.45 0.49 0.42 0.53 0.24 0.67 0.75 0.81 1.18 0.95 -2.99 1.0 -0.22 -2.18 -1.98 -2.34 -0.65 - - -3.18 -0.27 -0.61 -1.99 0.13 0.51 0.48 -0.45 -0.53 -0.83 -0.34
1.24 2.0 1.98 1.28 1.2 1.15 0.27 1.03 1.49 1.4 1.26 1.47 - - - - - - - - - - - - -0.21 - - - - - - -
0.81 1.35 1.64 1.46 1.21 1.18 1.26 1.42 1.11 1.37 1.12 0.92 - - - -7.33 -3.63 -4.95 -6.47 - - - -7.1 -3.94 1.06 -1.4 -1.89 -1.94 -4.85 -3.18 -4.54 -6.5
0.91 1.41 1.68 1.58 1.33 1.54 1.32 0.65 1.23 0.97 1.03 0.87 -7.37 -10.76 -11.75 -5.69 -2.93 -2.71 -3.22 -5.81 -4.6 - -2.84 -3.0 -1.8 -0.94 -0.54 -0.55 -2.67 -2.49 -2.38 -2.54
Smo448225 (GLU2)
 0.12 0.43 0.55 0.72 0.62 0.58 0.72 0.67 0.42 0.54 0.46 0.35 -0.62 -0.61 -0.33 -0.78 -0.5 -1.22 -0.72 -0.85 -1.42 -1.14 -0.76 -1.0 -0.27 -0.05 0.61 0.5 -0.76 -0.85 -0.17 0.11
0.79 0.44 0.98 0.64 0.32 0.55 0.9 1.2 1.39 1.35 0.99 1.15 -1.84 -0.53 -1.35 -1.89 -2.5 -2.75 -2.02 -1.68 -2.97 -4.56 -1.9 -1.79 -0.83 0.73 0.22 0.37 -1.61 -1.65 -1.85 -1.92
1.31 0.39 0.4 1.03 0.22 0.8 0.7 0.68 1.06 1.31 1.34 1.56 -0.08 0.28 0.62 -0.99 -2.77 - -1.05 -2.17 - - -3.38 -2.91 - 0.38 -1.36 -1.12 -2.21 -2.48 -1.29 -1.27

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.