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Heatmap: Cluster_55 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
1.69 1.38 1.66 1.98 3.43 2.76 3.21 2.06 2.63 1.54 0.98 1.23 0.88 0.65 7.81 1.38 1.43 1.6 1.48 0.17 0.54 8.6 1.36 1.25 1.56 0.73 2.29 1.97 1.05 1.44 0.83 1.0
2.33 2.19 3.81 2.7 3.45 3.5 2.72 1.82 2.5 2.02 2.46 2.21 1.07 0.23 12.32 1.7 2.66 1.58 0.59 8.16 0.18 14.44 0.21 0.2 0.75 0.51 0.98 1.55 1.92 1.94 0.65 0.7
8.7 8.9 11.44 9.81 6.93 8.87 9.86 11.37 11.73 12.05 10.66 10.53 11.73 1.63 3.41 7.19 9.17 12.96 14.28 52.03 13.08 105.92 3.94 5.31 2.04 7.31 2.71 2.62 7.97 7.5 7.64 9.27
1.39 1.33 0.48 1.81 4.11 3.63 4.55 4.51 3.09 2.46 1.58 1.58 0.83 0.4 2.47 1.23 1.99 1.74 1.91 10.97 2.39 26.27 1.96 1.54 0.88 0.89 3.4 2.47 3.27 3.4 3.39 3.1
129.62 127.67 133.35 158.33 125.89 163.23 127.26 141.61 143.53 123.44 115.4 110.58 146.68 211.39 237.7 129.19 115.48 144.88 136.88 120.13 152.91 261.08 126.32 114.59 145.28 87.52 161.75 128.53 102.06 98.21 106.3 110.71
Smo169481 (DSO)
 2.31 2.21 2.73 2.16 1.89 2.11 2.39 1.99 1.67 2.79 2.39 1.82 0.76 1.88 3.11 1.39 2.15 1.47 2.85 1.45 0.29 8.84 0.65 0.42 0.32 1.7 1.99 1.96 1.31 1.04 1.81 2.06
41.55 41.89 40.31 39.78 42.41 45.68 39.14 52.03 41.24 41.01 39.62 36.75 34.02 36.2 74.48 41.82 26.89 30.63 42.18 24.93 15.74 76.45 30.17 34.95 21.63 36.08 31.8 30.99 29.62 31.07 31.52 34.42
Smo25442 (ORC6)
 1.39 1.29 1.95 1.84 1.97 1.38 0.61 0.13 1.03 1.2 1.21 0.97 1.02 0.52 17.23 1.9 2.04 1.67 0.33 0.0 11.34 18.24 0.1 0.04 0.0 0.0 0.25 0.91 0.83 0.46 0.11 0.13
7.46 6.33 5.72 6.59 7.27 8.9 10.0 7.83 9.48 8.64 7.23 7.17 6.27 4.85 19.79 6.48 7.09 5.73 7.97 5.64 3.95 18.43 5.23 3.69 4.35 5.23 5.66 7.83 5.72 5.32 3.69 4.27
3.04 1.77 2.06 3.01 3.08 1.6 1.32 2.76 1.56 2.02 2.25 1.45 3.61 3.73 2.13 3.8 0.43 2.05 2.81 12.79 9.69 24.17 1.19 2.42 17.83 2.25 2.41 3.07 0.87 0.75 0.68 0.77
0.03 0.08 0.13 0.16 0.07 0.06 0.22 0.06 0.09 0.25 0.07 0.06 0.26 0.25 1.18 0.22 0.16 0.2 0.49 0.01 0.11 2.28 0.06 0.01 0.05 0.05 0.11 0.21 0.06 0.19 0.04 0.05
1.81 1.21 2.28 2.15 2.2 1.87 1.7 1.56 1.77 0.71 1.23 1.57 1.13 0.77 12.34 2.06 2.35 1.37 2.68 5.83 0.38 19.17 0.88 1.32 2.26 2.59 3.63 3.31 1.78 2.47 1.41 1.26
Smo407168 (SET22)
 4.33 4.26 5.59 5.34 2.6 6.77 6.39 4.81 5.9 6.67 5.65 5.21 6.05 7.68 19.19 13.66 6.2 5.19 5.5 25.18 9.42 73.14 4.83 4.35 9.85 1.91 3.84 3.76 3.15 4.45 5.91 5.81
0.11 0.27 0.05 0.06 0.22 0.47 0.31 0.16 0.38 0.28 0.31 0.24 0.08 0.39 3.27 0.47 0.29 0.36 0.84 2.88 1.7 8.0 0.79 0.5 1.52 0.21 0.26 0.96 0.29 0.44 0.17 0.06
Smo410329 (NFD1)
 17.48 26.52 23.04 28.43 30.89 32.06 36.68 29.6 28.57 22.57 22.94 15.73 16.45 19.68 65.53 19.46 15.79 13.56 20.99 7.16 10.62 41.91 20.05 20.24 15.03 16.26 30.09 27.13 15.0 18.09 10.3 10.33
0.12 0.18 0.35 0.14 0.11 0.22 0.14 0.07 0.22 0.12 0.07 0.2 0.15 0.96 1.11 0.29 0.07 0.4 0.08 0.1 0.54 1.18 0.05 0.02 0.14 0.12 0.29 0.08 0.02 0.03 0.03 0.0
Smo410935 (TOP1)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.19 0.0 0.0 0.0 0.0 0.0 0.0 0.07 0.0 0.21 0.0 0.94 0.09 2.87 0.0 0.0 0.0 0.0 0.0 0.4 0.0 0.0 0.0 0.0
0.98 0.8 0.68 0.82 1.21 0.77 0.84 1.01 1.23 1.05 1.05 0.86 0.86 0.67 1.02 0.76 0.53 0.74 1.73 1.74 0.55 4.31 0.83 0.86 0.4 0.47 0.27 0.47 0.53 0.6 1.0 0.99
1.14 1.98 0.85 1.59 1.79 2.66 2.33 2.21 3.02 2.4 2.19 1.59 0.46 0.13 4.49 0.58 2.82 1.09 1.07 7.15 2.1 12.93 0.62 0.17 2.82 1.16 0.77 1.74 1.81 2.21 1.44 0.95
Smo415204 (IAA33)
 1.16 1.27 1.03 1.56 2.78 2.77 2.53 3.22 2.9 2.3 2.0 1.89 3.17 4.29 11.58 5.32 1.29 0.92 4.56 3.18 5.66 10.23 1.16 0.81 1.26 1.78 1.67 2.15 2.15 1.76 0.75 0.7
Smo415452 (HVA22K)
 2.88 2.73 3.34 5.3 4.29 3.65 3.18 5.04 3.13 2.99 3.71 2.46 4.67 6.93 19.2 4.46 2.39 2.52 4.84 5.53 11.16 33.22 3.36 4.92 7.92 2.37 2.06 1.83 2.89 2.85 1.82 1.22
0.01 0.0 0.0 0.05 0.26 0.0 0.0 0.0 0.02 0.2 0.0 0.02 0.43 0.1 0.07 0.3 0.0 0.0 0.35 0.32 0.0 1.48 0.02 0.0 0.18 0.0 0.05 0.1 0.0 0.02 0.0 0.08
7.51 8.92 9.26 10.97 16.32 13.55 14.43 12.12 11.26 10.72 11.53 8.13 6.55 2.16 28.58 10.39 15.36 14.61 5.53 44.44 6.1 47.26 6.34 4.03 1.38 1.66 4.94 10.09 12.41 11.53 9.84 5.78
0.51 1.16 0.69 0.88 0.95 1.3 1.0 0.63 1.24 0.99 0.74 0.87 0.85 0.94 4.25 1.08 0.7 0.34 1.02 2.02 1.7 5.23 0.6 0.33 2.14 1.52 1.2 0.94 0.69 0.73 0.24 0.16
Smo418172 (LOX1)
 0.34 0.5 1.05 0.66 0.43 0.39 0.37 0.26 0.52 0.49 0.28 0.48 0.51 0.3 1.25 0.56 0.48 0.42 0.62 0.27 0.36 3.14 0.48 0.43 0.47 0.46 0.38 0.37 0.33 0.38 0.25 0.46
9.16 9.02 12.32 12.33 14.34 17.57 14.64 14.25 14.28 12.54 11.09 9.17 10.77 9.73 23.83 8.83 8.68 7.61 9.29 8.09 2.23 21.21 9.48 10.17 15.06 8.11 11.68 10.4 7.67 8.49 5.42 5.98
1.19 0.89 0.71 1.61 0.18 1.04 0.68 0.96 0.81 1.03 1.29 1.08 7.05 3.46 21.22 10.2 0.59 0.0 0.43 1.29 6.08 45.7 0.28 0.78 1.37 0.98 0.85 1.56 0.51 1.09 0.27 0.21
0.66 0.44 0.55 0.41 1.07 0.35 0.28 0.31 0.17 0.76 0.18 0.35 0.0 0.3 0.33 0.0 0.03 0.12 0.25 5.01 1.85 10.85 0.03 0.03 3.51 0.22 0.69 0.29 0.0 0.0 0.0 0.0
Smo424032 (IAR1)
 9.24 8.05 8.95 8.29 9.64 10.6 6.24 6.32 5.2 7.52 6.0 6.65 8.92 13.23 19.62 11.99 6.37 6.34 7.84 12.29 13.11 32.13 5.82 7.19 20.92 2.93 3.57 5.8 6.64 6.66 4.16 4.1
0.06 0.2 0.04 0.13 0.01 0.06 0.11 0.18 0.13 0.17 0.11 0.11 0.25 0.69 2.98 0.38 0.05 0.04 1.63 0.0 0.09 8.42 0.07 0.04 0.06 0.04 0.17 0.17 0.07 0.04 0.02 0.06
10.39 11.45 8.9 10.73 12.17 16.87 10.93 8.95 10.07 9.16 10.04 6.99 6.16 16.62 36.7 12.01 10.38 11.9 15.3 31.54 6.23 69.82 9.09 9.46 27.54 7.93 6.79 5.5 5.83 6.62 7.16 8.32
0.03 0.03 0.05 0.11 0.0 0.06 0.12 0.12 0.11 0.12 0.11 0.14 0.0 0.16 0.85 0.29 0.14 0.0 0.45 0.0 0.23 1.21 0.0 0.11 0.49 0.38 0.49 1.0 0.08 0.14 0.03 0.08
Smo431418 (HMA5)
 0.15 0.14 0.3 0.19 0.19 0.29 0.3 0.22 0.04 0.24 0.28 0.25 0.17 0.26 1.15 0.53 0.08 0.05 0.36 0.0 0.53 0.47 0.08 0.03 0.0 0.2 0.22 0.16 0.1 0.11 0.08 0.07
0.24 0.27 0.37 0.34 0.22 0.58 0.5 0.32 0.41 0.6 0.49 0.39 0.23 0.77 1.28 0.25 0.38 0.96 0.6 0.0 0.08 1.92 0.18 0.14 1.33 0.76 0.61 0.49 0.27 0.28 0.14 0.3
0.08 0.06 0.22 0.17 0.13 0.17 0.09 0.19 0.12 0.03 0.13 0.11 0.11 0.06 0.42 0.08 0.16 0.17 0.15 0.09 0.04 0.91 0.06 0.1 0.0 0.06 0.13 0.11 0.1 0.13 0.06 0.06
Smo441968 (APC8)
 21.38 23.29 26.44 28.08 31.48 31.21 30.65 31.0 27.94 24.28 23.86 19.92 26.94 18.64 51.71 28.87 20.94 15.43 32.75 21.57 18.33 48.73 24.51 27.44 19.47 29.51 27.94 25.63 21.01 21.39 18.61 21.14
1.81 3.15 1.49 3.17 2.09 2.46 2.42 1.94 2.44 1.42 1.82 1.62 1.46 0.82 5.11 4.06 2.24 5.1 4.42 4.48 5.6 14.27 1.57 0.74 5.63 2.4 1.39 1.14 1.87 3.49 1.12 0.65
Smo74892 (PGP11)
 0.52 0.39 0.26 0.5 0.64 0.45 0.44 0.48 0.36 0.54 0.56 0.5 0.23 0.48 2.56 0.41 0.33 0.3 1.35 0.27 0.04 3.83 0.13 0.13 0.07 0.37 0.24 0.35 0.21 0.24 0.23 0.22
207.9 248.39 342.31 242.84 242.52 307.37 268.12 247.39 245.81 273.65 270.97 218.52 393.16 223.5 269.07 364.51 264.7 316.94 415.82 596.3 359.09 1772.29 418.81 407.8 71.55 56.44 77.73 143.82 346.71 338.15 330.48 437.02
Smo80420 (PSF2)
 7.37 8.55 11.38 13.01 15.79 13.28 15.8 15.62 16.67 14.32 12.49 10.9 6.29 10.0 34.33 7.39 8.74 6.94 7.69 6.34 7.93 28.59 8.57 7.25 10.04 9.24 10.96 14.46 9.72 11.23 3.91 4.66
4.31 4.53 5.18 3.39 2.64 3.99 5.89 4.23 5.36 6.37 7.49 4.26 4.08 3.96 2.8 7.21 3.95 3.76 6.85 16.09 5.35 29.86 9.31 8.74 1.64 4.7 3.81 4.42 4.81 5.16 4.13 4.29
Smo92939 (CDC20.2)
 1.05 0.89 1.0 1.03 1.18 1.36 1.29 0.94 1.91 1.43 1.06 0.84 1.59 1.06 7.89 1.41 1.54 1.12 1.19 0.0 1.5 5.1 0.86 0.96 0.14 1.63 0.95 0.64 1.02 0.95 0.62 0.8
0.26 0.28 1.4 0.0 0.0 0.13 0.0 0.05 0.0 0.78 0.0 0.13 0.31 0.2 6.43 0.5 0.86 0.6 0.57 0.25 0.0 7.86 0.0 0.13 0.11 0.09 0.75 0.31 0.73 1.06 0.29 0.55
2.45 2.43 2.26 2.68 3.9 3.33 3.68 4.49 5.03 3.19 4.21 3.76 1.72 1.87 5.3 1.8 2.64 1.72 9.04 5.94 3.6 14.38 4.92 3.17 4.29 2.6 4.21 3.93 3.44 3.35 2.93 3.21

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)