Heatmap: Cluster_712 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

  • Gene
    Immature female cone
    Immature male cones
    Cambium and expanding xylem
    Cambium
    Expanding xylem
    Expanding and mature xylem
    Maturing xylem
    Wood
    Bark
    Bark, healthy
    S1 xylem tracheids
    S1 whole sections
    S2 ray cells
    S2 xylem tracheids
    S2 whole sections
    Dead late wood
    Phloem and cambium
    Dear early and late wood
    Bark, root and butt rot
    Vegetative shoots - needles
    Vegetative shoots - stem
    Vegetative shoots
    Girdled twig - stem
    Dried twig - needles
    Girdled twig - needles
    Needles
    Needles - dawn
    Needles - later afternoon
    Needles - midday
    Needles - night
    Light, 1 hour
    Light, 3 hours
    Light, 5 hours
    Light, 7 hours
    Light, 9 hours
    Light, 13 hours
    Light, 15 hours
    Darkness, 1 hour
    Darkness, 3 hours
    Darkness, 5 hours
    Darkness, 7 hours
    Darkness, 11 hours
    Vegetative buds
    Female buds
    Male buds
    Buds
    Pineapple galls
    Somatic germinants - abnormal type
    Somatic germinants - normal type
    Cell culture - H20 - 5 days
    Cell culture - KI added - 5 days
    Cell culture - KI added - 20 days
    Cell culture - KI removed - 4 days
    Cell culture - KI removed - 12 days
    Cell culture - solid medium
    Somatic embryogenic cell line
    0.24 -0.72 -0.44 -1.07 -1.95 -1.82 -3.5 -0.43 0.23 -0.74 - 0.12 0.76 -3.03 0.2 -1.13 - 0.09 -1.14 0.31 -0.21 -0.12 -0.19 -0.55 -0.88 0.41 0.15 0.0 -0.11 0.3 0.61 0.27 0.51 0.38 0.52 0.44 0.47 0.34 0.54 0.39 0.62 0.07 0.08 -0.13 1.2 -0.12 -0.23 -0.74 -0.29 0.31 0.72 0.79 0.11 -0.09 0.6 0.3
    -0.78 -1.86 -1.91 -1.14 -1.81 -1.09 - -1.28 0.69 -1.22 -1.87 -2.87 0.23 -4.65 -0.54 -0.75 - -0.17 -1.56 -0.87 -0.15 -0.81 -3.24 -0.9 -0.95 0.28 -2.66 -0.28 -0.33 -0.59 0.9 0.77 0.3 0.18 0.67 0.42 0.79 0.76 0.9 0.48 1.26 0.56 0.82 0.44 1.02 -0.39 0.15 -0.99 -0.2 0.69 1.01 1.05 0.73 0.57 1.27 0.26

    Details

    Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.