Heatmap: Cluster_3 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Ovary
Microspore
Generative cell
Pollen
Sperm cell
Pollen grain
Pollen tube
Pollen tube (1.5h)
Pollen tube (3h)
Pollen tube (9h)
Pistil
Style (before flowering)
Style (after flowering)
Style (pollinated, after flowering)
Flower (buds)
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Pericarp/Exocarp (4 DPA)
Pericarp
Pericarp (5 DPA)
Pericarp (7 DPA)
Pericarp (10 DPA)
Fruit (mature green)
Fruit (breaker stage)
Septum (7 DPA)
Septum (10 DPA)
Septum/Seed (4 DPA)
Seed (5 DPA)
Seed (7 DPA)
Seed (10 DPA)
Seeds (10 DPA)
Seeds (20 DPA)
Seeds (30 DPA)
Seeds (Pk-stem)
Seeds (Br-stem)
Seeds (Pk-equatorial)
Seeds (Pk-stylar)
Seeds (Br-stylar)
Seeds
Seeds (RR)
Seeds (LR)
Seeds (MG-equatorial)
Hypocotyl
Seedling (leaves)
Seedling (roots)
Callus
Meristem (vegetative)
Meristem
Apical meristem
Leaf
Root
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
Root hair cells
Solyc00g028960.1.1 (Solyc00g028960)
- - - - 0.8 - - - - - - - - - - - 3.01 1.72 - - - - - - - - - - - - - - - - - 1.02 - - - - - - - - - 3.2 -1.19 2.46 - - - 1.86 4.46 1.03 - - - -
-0.02 0.93 -0.41 2.43 -1.72 - -4.65 -6.97 -9.63 -9.05 -8.0 -9.12 2.79 -3.81 -4.73 -4.28 -4.6 -4.32 0.85 0.89 -0.56 -4.05 -0.04 -0.67 -0.56 2.36 0.73 -0.24 -0.34 -0.99 0.11 -0.64 -0.85 1.25 -3.63 -9.62 -1.62 -1.55 -3.53 -0.03 -3.12 -1.35 -0.48 0.41 -2.95 2.5 -3.57 -2.23 2.41 0.68 -4.55 -3.73 1.73 -1.56 -8.12 -5.9 -8.0 -5.2
1.82 1.51 0.21 1.27 -3.42 - -5.03 -7.33 -9.36 - - - 1.3 -5.25 -5.64 -5.76 -2.63 -3.75 1.68 1.82 0.47 -6.36 0.58 0.43 0.4 1.01 -0.48 0.91 0.8 0.47 0.96 0.62 0.09 -5.06 -3.09 -2.17 -0.06 -0.83 0.38 0.35 -1.48 -1.16 -0.71 -0.2 -0.37 2.49 -3.68 0.44 1.17 -0.94 -5.49 -4.81 1.49 -1.73 -6.87 -8.25 -8.98 -
0.05 -0.14 -0.93 -0.32 -3.1 -13.08 -5.66 -9.65 -12.28 -13.39 -13.15 -13.36 -0.1 -6.14 -6.66 -6.66 -0.7 -3.64 0.04 0.25 1.45 -7.53 1.42 1.5 1.43 0.67 -0.86 1.58 1.34 1.6 1.75 1.82 1.25 -4.23 -2.62 -3.16 -2.84 -2.97 -2.71 -2.36 -2.88 -3.18 -2.71 -3.39 -2.58 3.14 -0.67 -0.43 -0.62 -0.14 -7.81 -4.12 2.6 -1.71 -8.59 -8.86 -9.62 -11.39
-0.02 0.93 -0.41 2.43 -1.72 - -4.65 -6.97 -9.63 -9.05 -8.0 -9.12 2.79 -3.81 -4.73 -4.28 -4.6 -4.32 0.85 0.89 -0.56 -4.05 -0.04 -0.67 -0.56 2.36 0.73 -0.24 -0.34 -0.99 0.11 -0.64 -0.85 1.25 -3.63 -9.62 -1.62 -1.55 -3.53 -0.03 -3.12 -1.35 -0.48 0.41 -2.95 2.5 -3.57 -2.23 2.41 0.68 -4.55 -3.73 1.73 -1.56 -8.12 -5.9 -8.0 -5.2
1.18 1.46 -2.0 -17.46 -6.0 - -5.84 -8.89 -27.52 -38.29 -28.83 -28.92 -5.03 -7.23 -31.5 -7.88 -1.33 -3.7 1.51 0.8 1.2 - 1.94 1.53 1.38 -0.38 -0.74 1.62 1.31 1.39 1.95 1.56 1.3 2.41 -4.16 -2.62 -15.49 -1.94 -7.96 -3.14 -8.81 -2.64 -0.24 -6.36 -15.15 -16.1 -6.6 3.05 -17.13 -15.54 -36.38 -20.41 0.92 -16.28 -6.68 - -6.98 -
Solyc00g500129.1.1 (Solyc00g500129)
-0.63 -0.38 -1.93 1.04 -2.44 - -4.26 -8.35 -11.79 - -11.25 - 1.71 -4.79 -5.48 -5.03 -2.97 -4.14 -0.79 -0.59 0.54 -4.46 -0.39 -0.03 0.55 3.12 1.12 0.58 0.64 0.77 0.05 0.25 0.3 2.35 -1.3 -0.95 0.69 0.37 0.99 1.28 -0.32 0.11 1.38 1.03 0.35 -3.18 -5.79 -0.95 1.5 -3.97 -6.78 -7.26 -1.78 -1.19 - -9.98 -8.31 -8.54
-1.49 -1.75 -2.37 -1.22 -3.64 - -7.44 -10.66 -15.5 -14.9 -14.98 -14.08 -0.5 -6.37 -7.29 -7.02 -0.35 -2.48 -1.41 -1.13 1.64 -7.45 1.7 1.76 1.77 1.27 -0.35 1.81 1.59 1.83 2.11 2.08 1.68 2.16 -2.03 -2.48 -2.61 -2.77 -2.49 -2.19 -2.52 -2.68 -2.45 -2.84 -2.13 1.68 -1.34 -0.15 -1.21 -0.68 -7.27 -4.57 1.88 -3.35 -9.99 -9.81 -11.8 -8.49
- - - 0.29 1.2 - -1.13 -4.46 - - - - 2.41 - - - -0.5 -2.19 - - -0.14 - 0.61 0.7 0.49 3.78 3.01 0.93 0.49 -0.55 0.51 0.43 1.04 - - - -0.11 -1.49 - -0.44 - -2.67 -0.04 - -0.37 - 2.04 -1.04 1.13 - - - -0.15 - - - - -
-5.84 - - -3.35 - - - -6.85 -8.39 - - - -2.17 - - - -1.9 - - -5.79 2.78 - 2.86 2.47 1.52 - -3.89 2.89 2.18 2.2 3.23 2.34 1.61 - -3.95 - -3.43 - - -2.22 - -4.52 - - -3.37 - - -2.98 -3.41 - - - -4.77 - - - -5.02 -
Solyc00g500199.1.1 (Solyc00g500199)
-0.63 -0.38 -1.93 1.04 -2.44 - -4.26 -8.35 -11.79 - -11.25 - 1.71 -4.79 -5.48 -5.03 -2.97 -4.14 -0.79 -0.59 0.54 -4.46 -0.39 -0.03 0.55 3.12 1.12 0.58 0.64 0.77 0.05 0.25 0.3 2.35 -1.3 -0.95 0.69 0.37 0.99 1.28 -0.32 0.11 1.38 1.03 0.35 -3.18 -5.79 -0.95 1.5 -3.97 -6.78 -7.26 -1.78 -1.19 - -9.98 -8.31 -8.54
-6.15 -4.97 -8.72 - -10.51 -12.34 - -9.63 -9.99 - -10.27 -9.21 - -2.75 -5.52 -6.1 -2.16 -2.49 -5.24 -4.22 0.27 - 2.0 1.27 0.68 1.08 -0.61 0.56 0.35 -0.29 2.4 1.04 0.51 4.39 -3.1 -1.01 -1.8 -2.85 -2.23 -3.73 -9.37 -2.78 -0.52 -0.52 -3.55 -6.16 -2.31 2.63 -5.73 -2.23 -5.82 -6.37 -3.54 1.14 -7.5 -5.57 -6.54 -
-0.02 0.93 -0.41 2.43 -1.72 - -4.65 -6.97 -9.63 -9.05 -8.0 -9.12 2.79 -3.81 -4.73 -4.28 -4.6 -4.32 0.85 0.89 -0.56 -4.05 -0.04 -0.67 -0.56 2.36 0.73 -0.24 -0.34 -0.99 0.11 -0.64 -0.85 1.25 -3.63 -9.62 -1.62 -1.55 -3.53 -0.03 -3.12 -1.35 -0.48 0.41 -2.95 2.5 -3.57 -2.23 2.41 0.68 -4.55 -3.73 1.73 -1.56 -8.12 -5.9 -8.0 -5.2
Solyc00g500328.1.1 (Solyc00g500328)
2.85 2.89 1.48 -7.34 -7.02 -9.81 - -15.94 -9.38 -9.17 -10.12 -11.63 -4.28 -6.48 -6.33 -7.02 -2.54 -5.25 2.88 3.14 0.18 -6.48 0.56 0.26 0.32 -1.58 -1.66 0.25 0.44 0.61 0.82 0.07 0.08 - - - - -29.51 - - - -9.52 - - - 2.52 -3.56 0.78 -5.72 -1.08 -6.72 -3.97 1.2 -7.66 -15.67 -5.94 -6.33 -
- -1.74 - -0.07 -1.59 - 0.75 -7.35 -9.53 - -8.71 - 0.32 -34.25 -16.49 -8.23 1.65 -14.67 - - 1.83 -1.73 1.73 1.97 1.87 2.5 0.52 1.86 2.04 1.87 1.87 2.22 1.93 -0.12 -1.79 -3.93 0.87 -20.34 -5.79 -25.36 -2.78 -3.97 -9.41 -19.29 -31.05 - - -2.22 -1.36 -3.2 -4.66 - -0.65 -5.93 -3.87 -3.42 -4.46 -4.14
-2.89 -4.88 -3.78 3.2 -0.48 - -3.88 -6.69 - - - - 3.18 -4.05 -4.45 -4.06 -1.71 -4.93 -2.62 -3.63 0.31 - -3.34 -0.66 0.13 -1.37 -1.52 0.92 1.07 0.5 -2.31 -0.14 0.38 -2.69 -3.43 -2.98 -0.94 -1.61 -1.17 0.94 -1.28 -1.09 -1.46 -1.96 0.09 -0.64 -1.56 1.67 2.37 -0.26 -4.69 -5.08 1.17 2.93 -3.84 -6.42 -4.19 -
-0.67 -0.63 -1.39 5.06 -1.96 -6.62 -2.9 -6.03 -3.55 -6.5 -6.1 -6.44 -1.16 -2.19 -3.46 -3.28 -0.36 -2.16 -0.77 -0.92 -0.78 -10.98 -1.67 -1.63 -2.04 -4.54 -5.74 -0.34 -1.24 -0.3 -0.78 -0.88 -0.8 -1.82 -1.31 -4.48 -3.29 -3.42 -2.94 -3.38 -3.51 -3.67 -2.88 -3.24 -4.4 1.43 0.27 -1.6 0.01 -1.63 -0.51 1.23 -0.3 -0.92 -3.04 -1.33 0.43 -0.2
-5.82 -5.78 -2.75 5.37 -4.19 - -4.34 - -8.49 - - - -4.55 0.75 -0.56 -2.16 2.56 -0.86 -2.7 -2.79 -3.01 - -3.74 -2.29 -4.35 - - -4.4 -5.02 -4.23 -2.17 -2.32 -5.91 - -4.57 - - - - - - -7.68 - - - -0.48 -0.83 -2.38 -3.12 -2.55 -3.44 -0.08 1.68 -5.16 -5.38 - - -
-3.97 -3.51 -5.07 3.09 -0.52 - -4.67 -7.57 -8.4 - - -7.44 4.24 -5.62 -7.36 -5.18 -2.41 -6.03 -4.25 -3.04 0.03 -4.92 -2.28 -1.08 -0.37 -0.79 1.36 0.29 0.98 -0.01 -2.18 -1.64 0.02 -3.57 -3.2 -3.9 -0.42 -0.68 -0.11 1.16 -2.03 -1.02 -1.36 0.22 -0.26 -1.27 -1.87 -0.03 2.54 -1.83 - - 0.65 -0.83 - -6.47 - -
Solyc04g011780.1.1 (Solyc04g011780)
- - - 3.11 - - - - - - - - - -1.18 - - 1.53 - - -0.05 - - - - - - - - - - - - - - - - - - - - - - - - - 3.31 4.69 0.56 - - - 1.42 2.39 - - - - -
Solyc04g011790.1.1 (Solyc04g011790)
- - - 1.23 1.21 - 1.42 - - - - - - - - - -1.75 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.35 3.98 1.27 0.46 - - 3.95 3.68 - - - - -
Solyc04g011800.1.1 (Solyc04g011800)
- - -0.24 -2.56 - - - - - - - - - - - - 2.22 1.47 0.98 0.69 - - - - - - - - - - - - - - - - - - - - - - - - - 2.66 4.25 -0.33 - - - 2.91 3.55 - - -0.76 - -
Solyc04g011810.1.1 (Solyc04g011810)
- - -1.7 0.08 - - - - - - - - - -1.67 - -1.72 1.66 1.63 - 0.66 - - - - - -1.64 - -2.45 - - - - - - - - 0.24 - - - - -2.94 0.27 - 0.12 -0.03 4.67 1.02 -2.48 -1.21 1.29 2.0 2.55 -0.03 - 0.4 -1.4 -
Solyc04g011820.1.1 (Solyc04g011820)
- - -1.59 5.04 -1.6 - - - - - - - -3.42 - -1.99 -3.94 -2.5 -0.88 - - - - - - - - -1.06 - -2.24 -2.3 -3.04 -2.61 - - - -1.24 - -0.62 - - - -5.01 - - - - 2.04 1.81 - -3.12 0.72 2.33 0.65 -0.5 - - - 2.16
Solyc04g011830.1.1 (Solyc04g011830)
- - - 0.44 - - - - - - - - - - - - -0.87 0.32 - -0.36 - - - - - - - - - - - - - - - - - - - - - - - - - -0.79 3.89 1.16 -1.3 - -0.68 4.12 3.99 1.06 - - - -
Solyc04g011840.1.1 (Solyc04g011840)
- - - 1.39 - - - - - - - - -1.98 - - - 1.44 -0.14 - - - - - - - -1.0 - -1.81 - - - - - - - - - - - - - - - - - -0.33 3.39 1.63 - - - 4.56 3.68 - - - - -
Solyc04g011860.1.1 (Solyc04g011860)
- - -2.81 - - - - - - - - - - - - - - -0.47 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.22 4.28 1.39 -1.89 - - 3.46 4.36 0.03 - - - -
Solyc04g011870.1.1 (Solyc04g011870)
- - - 0.99 - - - - - - - - -2.51 -2.93 - - 0.41 0.51 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.75 5.01 -1.01 - - - 2.39 3.54 - - - - -
-0.69 -2.21 -1.79 3.59 -2.7 - - - - - - - -0.38 -1.74 -3.25 -2.3 0.84 -1.92 -0.24 -1.4 1.14 -0.2 0.27 0.47 0.45 -0.95 -1.04 1.37 0.47 0.83 1.44 1.07 0.31 -0.27 -0.24 -1.91 -2.76 -1.74 -1.66 -0.77 - -2.33 -2.52 -1.62 - 0.44 -1.68 -0.59 1.16 0.68 1.81 0.55 -0.59 -0.84 -0.42 -0.88 1.05 -1.01
0.75 -0.14 1.47 -3.75 -2.62 - - -9.47 - - - - 0.32 -1.01 -2.78 -2.7 0.98 -1.35 2.04 1.08 -0.71 - 1.46 0.77 -1.5 -5.28 -6.22 -1.0 -5.44 -2.91 -4.19 -4.4 -4.11 -5.34 -7.53 -8.14 - - - - - -9.64 - - - 0.55 2.7 -0.32 -2.57 1.91 0.62 3.06 2.51 0.5 1.78 -4.01 -8.82 1.16
Solyc06g054570.1.1 (Solyc06g054570)
-2.44 -1.75 - -0.51 -0.55 - - -6.08 - - - - - -2.03 - - 1.82 1.28 - - - -2.5 - - - - -3.34 - - - - - -3.64 - -0.23 -1.81 - - -0.08 - - -3.42 - - - 0.91 4.83 -2.3 -0.77 - -3.23 2.84 2.99 -0.93 -1.3 - -2.7 -
Solyc07g009470.3.1 (Solyc07g009470)
0.42 -0.31 0.33 3.35 -1.88 -2.62 -1.95 -3.24 -2.35 -0.6 -0.35 -0.6 -1.06 -4.59 -3.59 -3.85 -1.83 -2.15 0.57 0.71 0.19 -1.54 -5.86 -1.49 -0.7 -1.35 -1.54 0.07 0.28 -0.04 -1.86 0.38 0.6 2.31 -0.47 -2.08 -1.23 -0.58 -1.15 -0.06 -1.42 -1.32 -0.21 0.11 -1.05 0.76 -0.79 -1.03 -1.57 0.12 1.09 1.05 0.12 -0.99 0.53 0.17 1.63 -2.44
- - - - - - 3.37 - - - - - - - - - - - - - 0.95 - 1.11 2.36 1.38 1.61 - 0.94 1.7 - 2.19 2.82 2.57 - - - - - - - - - - - - - - - 3.1 - - - 0.56 - - - - -
-2.04 -2.82 -2.68 4.17 -0.14 - -3.42 - - - - - 1.94 -4.22 -3.64 -4.26 -2.86 -0.29 -1.99 -1.35 0.49 - -2.58 -0.53 0.13 -0.78 -0.11 0.27 0.51 0.46 -2.32 -0.62 0.24 0.86 - -2.48 -0.14 -1.62 -0.68 0.94 -2.26 -1.08 0.22 -0.22 0.55 0.4 0.91 -3.19 2.01 -4.35 - -2.19 2.08 -4.98 -6.25 -4.52 - -
1.41 - - 0.48 - - - - - - - - -1.06 - - -1.5 - - - - -0.3 - 0.37 1.39 -0.48 2.3 0.03 1.57 1.82 0.84 1.96 0.76 0.78 - - - - - - 1.94 - -1.95 3.14 2.54 - -0.75 - 1.5 -0.25 1.05 - - 0.15 - - - - -
Solyc09g061460.3.1 (Solyc09g061460)
-1.93 -1.57 -2.47 4.53 -0.21 -2.98 0.03 -0.1 -1.18 -6.12 -5.54 -8.02 2.85 -2.46 -5.68 -2.82 -1.98 -5.43 -2.83 -1.17 -0.37 -6.47 -0.41 -0.24 -0.04 -1.73 -1.21 -0.2 -0.42 0.08 0.18 0.0 -0.04 -3.74 - - -2.25 -2.1 -2.54 -0.5 - -3.06 -2.13 -2.5 -2.55 -1.77 1.56 -1.53 2.16 -4.3 - -0.82 0.61 -3.3 -3.97 -6.12 - -
Solyc10g012213.1.1 (Solyc10g012213)
-4.82 - - -3.03 -5.13 -4.61 -4.49 -5.8 -10.39 - -9.0 - 0.08 -4.0 -5.81 -6.59 0.09 -6.86 - -5.54 2.5 -5.68 1.86 1.32 1.98 -5.05 1.39 3.55 3.36 0.89 2.0 1.81 0.88 - - - 0.94 -4.91 -5.42 -18.39 - -3.19 - - -2.18 -5.1 -8.41 - -2.95 - -2.22 - 0.31 - - - - -
-2.65 - -5.62 -2.62 -12.49 - - -33.0 -7.89 -9.38 -10.18 -9.3 -30.48 -2.25 -5.0 -3.26 -1.36 -1.52 - - 0.91 -2.15 0.89 0.62 1.0 4.36 2.25 1.25 1.48 0.97 1.57 0.8 0.69 -2.88 -0.35 0.06 -0.39 -0.48 -0.16 -1.06 -10.4 -0.67 1.57 -1.28 -6.62 - - - -2.21 - -3.12 - -0.11 - - -4.63 -5.97 -3.39
Solyc11g021195.1.1 (Solyc11g021195)
-5.78 - -4.81 2.31 -1.31 - - - - - - - 2.81 -4.42 -5.68 -6.59 -1.93 -7.49 -4.69 -5.86 1.47 - -2.0 0.47 1.2 -0.55 0.04 2.01 2.25 1.62 -1.35 0.55 1.38 - -2.88 -2.65 0.73 -0.06 0.51 1.84 -1.9 -0.16 0.72 0.91 0.34 -3.86 -2.36 1.27 0.95 -1.06 -4.16 - 0.13 -1.66 - -5.75 - -
Solyc11g021280.2.1 (Solyc11g021280)
- - - -4.59 - -5.16 - -5.37 -6.0 -7.64 -7.83 -7.06 -4.95 -9.22 - -7.24 -1.54 -5.83 - - 1.56 -2.6 2.41 1.87 1.69 2.84 0.98 2.33 1.6 1.65 2.57 1.95 1.71 - - - -4.79 - - -4.87 - -12.31 - - - - -6.67 3.06 -5.82 -2.46 -6.31 -4.91 -5.21 -6.34 -6.37 -5.49 - -
-5.77 -2.29 -3.6 3.19 0.36 - -2.04 -6.79 - - - - 2.73 -5.16 -6.9 -7.66 0.04 -1.4 -1.94 -1.66 0.34 - 1.02 0.77 0.51 2.06 1.66 0.55 0.28 0.36 1.52 0.89 0.53 1.17 - -3.33 -1.63 -1.87 -3.16 -1.36 - -2.74 -2.13 -2.12 -0.93 -4.88 -3.95 -1.4 1.57 - -4.33 - 2.65 -3.13 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.