Heatmap: Cluster_1 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots (apex), 7 DAG
Roots (differentation zone), 4 DAP
Roots (elongation zone), 4 DAP
Roots (meristematic zone), 4 DAP
Roots (stele cells), 7 DAS
Roots (tip)
Leaves (rosette), 21 DAG
Leaves (rosette), 29 DAG
Leaves (rosette), 35 DAG
Leaves (rosette), 42 DAG
Leaves (rosette), 57 DAG
Epidermis cells
Mature guard cells
Stems (internode)
Stems (internode), senescent
Meristem (M1-3), 7-9 DAG
Meristem (M4-6), 1-12 DAG
Meristem (M7-1), 13-16 DAG
Axis of the inflorescence
Pedicel
Flowers (receptacles)
Flowers (floral buds)
Flowers (sepals)
Flowers (petals)
Flowers (stamen filaments)
Flowers (anthers)
Flowers (carpels)
Flowers (ovules)
Stigmatic tissues
Pollen
Siliques
Siliques, senescent
Pods of Siliques
Pods of Siliques, senescent
Embryo
Endosperm
Seeds, dry
Seeds, from senescent siliques
Seeds, young
Seeds, germinating
Seedlings, 5 DAG
Seedlings, 11 DAG
Seedlings, 14 DAG
Seedlings, etiolated
AT1G01280 (CYP703)
-6.16 - - - - - - - - - - -6.17 - - -7.28 -10.12 -10.34 -8.55 -8.2 -6.79 - - -6.2 - - 5.45 -4.16 - -6.79 -6.54 -8.21 -6.15 - - - -4.18 -8.72 - - -8.62 - - - -
AT1G02050 (LAP6)
-2.16 -3.44 -2.32 0.15 - -1.14 -2.48 -1.23 -0.71 -1.11 -1.12 -4.18 -4.01 -2.72 -1.31 -1.95 -1.59 -1.05 -1.45 -1.66 -1.43 -1.82 -1.91 -2.27 -3.38 4.93 0.15 -1.08 -2.5 -8.14 -2.0 -2.28 -2.19 -3.64 -0.97 -1.73 -1.95 -2.03 -1.32 -1.95 -1.39 -2.64 -1.62 -1.81
AT1G02510 (KCO4)
- - - - - -4.93 - - - - - - - - - -3.47 -2.14 -2.88 -0.49 -3.56 - -0.91 -6.03 -2.68 0.62 4.95 -1.24 -0.31 2.99 -2.68 -6.21 - -7.15 -4.02 - -3.54 - - -3.31 - - - -5.37 -
AT1G06280 (LBD2)
- - - - - - - - - - - - - - - - -9.06 -9.01 - - -8.31 - -5.87 - - 5.45 -4.47 - - - -6.33 -5.35 -6.59 - -5.97 -4.88 - -8.38 - -8.26 -8.51 - - -9.76
AT1G08065 (ACA5)
-6.22 - - - - - - - - - - - - - - -8.15 -8.53 -7.0 - -5.47 - 2.36 -7.19 - -6.76 5.18 -2.36 -0.19 - - -1.86 - -4.08 - - 0.08 -5.75 - -4.39 -6.84 - - - -
-2.6 -4.98 -2.78 -4.27 - -5.61 -5.3 -3.29 -2.66 -2.77 -2.91 - - -5.85 -3.29 -4.78 -6.95 -5.35 -5.79 -4.83 -4.28 - -4.61 -3.69 -3.4 5.37 -3.52 -4.84 -4.32 -5.69 -5.49 -5.0 -5.33 -4.25 -4.69 -2.86 -2.23 - -4.41 -5.48 -3.59 - -3.52 -3.17
- - - - - - - - - - - - - - - - - - - - - - -0.98 - - 5.43 -1.98 - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.43 -1.87 - - - - - - - - -0.96 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.33 -2.83 - - - - - - - - 1.87 - - -3.35 - - - - -
- 0.17 - - - - -1.16 - - - - - - - -0.87 - - -2.86 - -0.15 - 0.32 -0.66 - - 4.87 -0.65 - - - -1.84 - - - 0.45 2.28 - - -0.74 0.79 - - - -2.72
- - - - - - - - - - - - - - - - - - - - - - - - - 5.24 -0.99 - - 1.35 - - - 1.05 - - - - 0.25 - - - - -
AT1G61070 (LCR66)
-5.96 - - - - - - - - - - -8.61 - - -7.86 -9.67 -8.06 -7.79 -8.63 -5.29 - - -4.85 - -8.03 5.45 -3.97 -7.12 -8.75 - -7.13 -6.02 -8.44 - - -7.76 - -9.25 -6.85 -7.72 - - - -
AT1G62940 (ACOS5)
-3.25 - -8.53 -6.3 - -6.09 - - - - - - - - -6.24 -8.37 -8.0 -6.86 -8.4 -4.86 - - -5.52 - -7.94 5.45 -3.77 - -8.52 - -6.64 -4.76 -8.54 - - -8.54 -7.93 - -9.24 -6.33 - - - -7.76
-1.45 -1.14 -2.86 -4.62 - -2.54 -0.71 -2.22 -2.09 -2.67 -2.79 -2.2 -4.25 -0.2 -0.76 -1.7 -1.6 -1.66 0.56 0.5 -0.33 0.19 0.37 -1.43 -1.24 4.6 -0.46 -1.93 -1.2 -5.66 -0.17 -3.56 0.29 -1.65 -1.22 -2.5 -5.18 -5.07 -1.43 -1.24 -2.17 -0.21 -0.55 -1.49
AT1G69500 (CYP704B1)
-6.75 -6.95 - - - - - - -6.61 -6.72 -5.71 - - - -5.92 -10.7 -10.26 -8.54 - -0.08 -4.36 -0.91 -2.62 -5.14 - 5.39 -2.53 -7.82 -2.86 - -7.58 -5.03 -8.92 - - - -8.3 - -9.2 -7.28 - - -5.76 -9.87
AT1G75030 (TLP-3)
-4.86 -2.34 -9.6 -8.96 -0.81 -7.4 -1.43 -3.41 -3.99 -3.98 -3.97 -3.78 - -0.86 -5.09 -2.14 -2.68 -4.65 -2.99 -2.36 -2.28 -4.05 -2.61 -4.75 -3.79 5.28 -2.29 -2.39 -2.18 - -2.7 -4.54 -3.35 -2.61 -4.17 -4.65 -3.92 -7.3 -1.43 -5.87 -4.54 -4.84 -3.3 -4.96
- - - - - - - - - - - - - 0.19 - -0.16 0.69 1.0 - - - - - - - 4.74 -0.32 -0.82 - - -2.61 - - - - -1.85 - - -0.25 -2.48 0.34 - - 2.91
-4.22 -2.71 0.91 -3.52 - 0.96 - -10.73 - -5.74 -1.99 -8.82 -6.65 -5.87 -6.78 -7.28 -6.54 -8.01 -7.99 -7.06 -1.66 -7.02 -5.28 - -7.8 4.86 -2.73 -9.05 - - -0.82 -5.78 -2.29 -5.7 3.04 -0.29 -7.93 -9.6 -7.93 -3.96 - -8.06 -6.3 -4.93
-0.62 - -0.79 -0.14 - -1.61 - - - - - - - - - - - -2.98 - - - - -1.63 - - 5.27 -4.1 -0.71 - - -1.4 - - - - -1.82 - - 0.27 - - - - -
AT2G03160 (SK19)
- - - - - - -3.08 - - - - - - - -0.25 - - - -2.56 - - - -3.54 - - 5.37 -1.45 - - -0.21 - - - -2.77 - - - - -4.94 - - - - -
AT2G26960 (MYB81)
- - - - - - - -2.69 -0.4 -1.18 -0.07 - - - -0.26 -3.62 - -4.87 - -3.03 -4.02 - -3.5 -2.65 - 5.27 -1.32 - -2.65 -1.51 -4.06 - -3.67 - -2.42 - -3.06 - - - - - -1.26 -
- - - - - - - - -1.95 -2.04 -0.06 - - - 3.67 - - - - -0.74 - - -1.25 - - 4.68 -1.75 - - - -2.12 - - - - 0.99 - - -0.62 - - - - -
- - - - - - - - - - - - - - - - - - - - -2.31 - - - 1.28 5.33 -4.15 - - - -5.7 -0.64 - - - -1.57 - - - - - - - -2.56
-1.49 -2.64 -1.79 0.71 -2.0 -0.69 -2.2 -3.14 -1.66 -1.24 -1.36 -3.78 -3.12 -1.06 -1.98 -1.38 -0.9 -0.25 0.23 -0.29 -1.11 -1.61 -1.24 -3.1 -4.33 4.59 0.28 -0.19 -1.4 -2.34 -1.21 -2.42 -1.53 -2.81 0.63 0.35 -2.68 -2.35 -1.08 -2.35 -0.95 -2.11 -0.95 -2.27
AT3G06100 (NLM6)
-6.5 -5.13 - -7.01 - -8.34 -2.6 -1.88 -5.83 -9.27 -7.65 - - -5.58 -6.07 -7.25 -7.05 -5.81 - -4.8 -6.88 -3.97 -3.94 -2.21 -3.13 5.39 -3.21 -2.83 -7.64 - -4.17 -7.8 -4.99 -6.15 - -1.7 - - -3.59 -8.71 -3.09 -3.42 -4.03 -3.59
-4.56 - - - - - -5.17 - -4.81 -6.09 -6.31 - - -3.06 -4.82 -5.34 - - -4.6 -4.64 - - - - -5.15 5.12 -3.6 -4.67 - - -2.25 - -2.4 - - 3.05 - - -3.91 - - - - -5.67
AT3G11980 (MS2)
-6.6 -7.23 - -8.11 - - - - - - - - - -4.12 -9.85 -10.04 -9.61 -9.68 -8.63 -7.11 - -6.33 -5.47 - -6.62 5.45 -2.8 - -7.75 -4.76 -7.21 -6.43 -8.58 -9.6 - -10.73 -8.57 - -11.06 -8.5 - - -8.94 -10.59
AT3G13220 (WBC27)
-4.36 - - - -2.04 - - - - - - -3.91 - -7.02 - -9.9 - - -6.97 -4.72 - - -5.68 - -6.37 5.44 -3.27 -6.03 - - -6.53 -5.22 - - - -6.47 -5.5 - - -6.84 - - - -
- -0.44 - - - - - - - - - - - - - - - - - - - - - - - 5.35 -1.8 - - -0.19 -2.62 - - - - 0.21 - - -3.64 - - - - -
- - - 1.41 - - - - - - - - - - - - - - - - - - - - - 5.18 0.2 - - - 0.5 - - - - 0.32 - - 0.48 - - - - -
- 1.66 - - - - - - - - - - - - 2.06 - - - - - - - - - - 5.06 -3.48 - - - - - - - - 1.56 - - - - - - - -2.22
- - - - - - - - - - - - - - - - - - - - - - - - - 5.24 -1.57 -1.04 - - - - - - - 2.43 - - - - - - - -
-6.01 - - - - - - - - - - - - - -7.7 -10.54 -10.29 -9.97 -6.03 -6.44 - - -7.08 - - 5.46 -6.23 -7.08 -6.73 - -8.76 -6.89 -10.76 - - -9.69 -8.14 - - -9.55 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.41 -1.24 - - - 0.25 - - - - - - - - - - - - -
AT3G42960 (TA1)
-6.72 -6.94 - - -7.21 - - - - - - - - -6.57 -7.42 -9.58 -8.95 -8.53 -9.39 -5.56 - - -5.39 - -9.88 5.45 -4.45 -7.07 -6.45 - -6.89 -5.79 -10.48 -8.54 -9.23 -7.8 -6.54 - -9.74 -8.07 - - - -11.17
-1.42 - 1.87 - - - - - - - - - - - - - - - - - 2.52 - - - - 5.01 -3.02 - - - -6.63 - - - - - - - - -3.08 -2.27 - -0.15 -0.66
- - - 0.26 - - - - - -1.75 - - - - - - - - - - - - - - - 4.94 -0.74 -0.31 - 3.05 -2.68 - - - -0.16 -0.31 - - -1.75 - - - - -
- - - - - - - - - - - - - -2.08 - - -2.47 - - - - - - - - 4.9 -1.52 0.51 - - -1.68 - -1.8 - - 3.21 0.91 - -2.84 - - - - -
-4.92 -6.94 - - - - -4.49 -5.94 -4.65 -4.41 -4.5 -1.65 0.13 -5.82 -5.54 -7.81 -8.64 -7.52 -3.79 -3.82 -4.52 -4.78 -3.44 - - 5.37 -3.63 - -6.29 -5.72 -4.64 -5.23 -5.27 -5.78 -4.48 -6.09 -4.58 - -7.19 -5.22 -5.83 -3.5 -3.02 -6.06
AT3G59530 (LAP3)
-3.74 -2.85 -1.84 -2.1 - -2.88 -3.15 -0.73 -0.32 -0.69 -0.74 -2.1 -3.44 -1.76 -2.12 -2.98 -2.82 -2.28 -1.19 -1.1 -0.64 1.35 -1.14 -1.11 3.52 4.0 -0.26 -0.43 -2.91 - -0.1 -3.52 -1.59 -1.45 -2.0 -1.62 -3.1 -4.96 0.64 -3.5 -3.3 -3.29 -0.92 -3.15
- - - - - - - - - - - - - - - - -7.61 - - - - - - - - 5.46 -4.71 - - - - -4.75 - - - - - - - - - - - -
AT4G14080 (MEE48)
-6.25 - - - - - - - - - - - - - -7.02 -10.19 -9.04 -8.06 -6.4 -5.73 - - -5.93 - -7.58 5.45 -4.99 -7.56 -10.21 - -6.99 -6.03 -8.76 - -9.99 -5.74 -8.03 - -7.85 -7.34 - - -8.82 -
- - - - - 1.95 - - - - - - - - - -2.19 -5.01 2.15 - - - 1.95 - - - 4.57 -2.3 1.11 - 0.24 -3.13 - - - -1.73 1.8 - - -1.46 -4.02 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.44 -0.53 - - - - - - - - - - - - - - - - -
AT4G20050 (QRT3)
-2.52 -2.17 -4.91 -7.67 - -9.12 -3.61 - -8.6 -10.0 -5.34 -6.16 -5.71 -0.27 -4.38 -3.77 -6.37 -5.4 -3.23 -3.45 -2.03 0.73 -2.9 -3.63 -4.31 4.91 -1.48 1.34 -3.59 -8.17 0.34 -4.6 -1.37 -2.18 -3.14 1.15 -7.14 -8.81 1.09 -4.83 -2.47 -3.45 -3.86 -2.76
AT4G22080 (RHS14)
0.37 3.48 -0.22 - - -5.41 - - - - - - - - -7.3 -9.56 -9.23 -8.25 - -8.72 - - -5.51 - -8.76 4.83 -4.15 - -8.33 - -8.31 -6.49 - - - - - - -10.65 0.14 -1.69 - -1.21 -1.86
- - - - - - - - - - - - - - - - - -6.97 - - - - -5.58 - -3.52 5.45 -5.91 - - - - - - - - -3.7 - - - - - - - -
- - - - - - - - - - - - - - - - - -6.42 - - - - - - - 5.45 -4.66 - - - -6.39 - -6.09 - - -4.07 - - - - - - - -
AT4G34850 (LAP5)
-3.67 - -4.35 -5.61 - -4.6 -6.98 -7.68 -5.99 -5.83 -6.39 -5.81 - -6.17 -4.62 -8.23 -6.85 -5.53 -4.31 -3.98 -5.54 -5.48 -5.81 -6.57 -6.15 5.42 -3.67 -4.12 -6.62 - -5.08 -4.12 -4.89 -6.84 -3.65 -5.97 -3.73 -8.07 -4.12 -5.08 -5.57 -5.2 -6.77 -4.51
AT4G35420 (DRL1)
-3.06 -0.19 -2.53 -3.09 - -4.66 -1.33 -0.37 -0.24 -0.33 -0.56 -1.03 -4.91 -1.24 -1.38 -3.37 -2.43 -1.38 -1.06 -0.65 -0.07 -0.96 -0.99 -2.2 -2.94 4.72 0.17 -1.08 -0.23 -7.87 -1.43 -3.48 -0.7 -2.06 -1.01 -1.71 -2.96 -4.12 -1.39 -1.73 -1.75 -0.67 -1.02 -1.14
1.04 -0.02 -3.11 -7.79 - - -0.79 -4.95 -10.3 - -10.17 - - 2.28 -6.53 0.01 -1.78 -4.19 -0.28 0.92 -3.7 -1.43 -0.53 -1.72 -1.96 4.0 -0.91 -1.1 3.29 - -2.88 -5.78 -5.01 - -5.62 -6.58 - -9.03 -3.41 -0.96 -1.34 -2.42 -1.01 -0.18
- - -1.78 1.45 - 1.14 - - - - - - - - -1.87 - -4.8 - - - - - - - - 4.95 -1.23 0.29 - -1.56 -1.72 -1.93 -2.19 - - 1.7 -0.6 -0.37 -2.48 - - - - -
- - - - - - - - - -2.51 -3.39 - - - - - - - - - -2.25 - - - - 5.05 -1.56 -0.21 - - -1.4 - - - -0.05 2.5 - - 1.08 - - - - -
- 1.17 - - - - - - - - -3.3 - - 1.47 1.06 - - -1.66 - - - 0.91 - - - 4.52 -2.18 -1.7 - -1.63 1.18 - 1.01 - - 2.6 - - -1.06 - - - - -
-4.67 -1.7 -2.1 - - -6.34 - -9.35 - - - -6.2 - -8.67 -5.5 -8.41 -8.73 -7.79 -8.66 -5.55 -4.02 - -4.59 - -8.15 5.43 -3.4 -6.35 -6.52 - -6.22 -5.68 -8.72 -6.49 - - -6.55 -9.32 -10.01 -5.22 - - -6.6 -7.72
- - - - - - - - -3.79 -2.76 -2.4 -2.55 - - -2.12 - - - -3.64 - - 0.39 - - - 4.91 1.45 1.95 - - -6.78 - - - -1.89 2.11 -4.11 - -1.48 - - - -3.89 -
AT5G22260 (MS1)
- - - - - - - - - - - - - - - - - - - - - - - - - 5.45 -1.95 - - - - - - - - -5.79 - - - - - - - -
-1.58 -0.94 -0.34 -5.3 0.94 -2.89 -7.77 -9.36 -11.52 -11.63 - - - -0.93 -7.56 -5.73 -6.57 -5.95 -3.47 -2.77 -7.2 -4.6 -5.0 -7.72 -4.52 5.27 -3.32 -7.3 -6.02 - -4.36 -6.72 -5.48 - -6.26 -3.43 -9.35 - -9.23 -3.24 -4.48 - -5.28 -2.73
- - - - 3.38 - - - - - - - - - 0.49 -2.23 - - - - -1.81 1.42 - 0.91 0.9 4.0 -2.32 - - - -5.76 - - 1.48 - -0.05 2.09 -0.27 -2.93 - - - - -
- - - - - - - - - - - - - - - - - - -1.59 - - 3.47 - -1.71 - 4.95 -2.73 - - -0.49 -2.91 - - - - -1.71 - - -3.97 - - - - -
- - - - - - - - -1.99 - - 2.62 - - - - - - - - - - - - -0.4 4.77 -0.83 - - - -2.32 -0.15 - 0.03 - - 2.79 - - - - - - -
AT5G37415 (AGL105)
- - - - - - -0.15 -1.33 - - - - - - - - - - 0.36 - - - - - - 5.18 -2.12 - - - - - - - - 0.89 - - -2.02 - 1.56 - - -
- - - - - - - -5.8 -2.51 -1.26 -0.96 - - - -4.36 - - - - - -5.4 - -3.53 - -2.37 5.41 -3.67 - - - - - -4.66 - - - - - - - - - - -
AT5G41090 (NAC095)
-3.81 -1.3 - - - - - -7.18 -4.38 -5.2 -2.92 - - -3.5 -1.54 - -6.72 -4.2 -5.5 - -2.72 0.96 -3.07 -4.1 -2.23 4.06 0.98 4.24 -3.97 -5.42 -2.64 - -2.39 -2.09 -5.33 -1.4 - - 0.47 -4.21 -6.29 - -2.43 -5.23
AT5G41200 (AGL75)
- -0.93 - - - - -2.31 - - -2.39 - - - - - -4.07 - -3.11 - - - - - - -1.29 4.12 -0.6 0.19 - - -3.22 1.5 -2.85 4.08 - 1.03 -0.28 - -3.25 - - - - -1.7
-1.11 -2.06 - - - - -4.97 -5.0 - - - - - -0.19 -4.42 -0.44 -3.25 -6.78 -4.52 - -4.83 - -2.44 - - 5.22 -7.0 - - - -4.26 - -2.0 -4.66 - 0.45 -3.99 - -3.86 -5.15 0.02 -1.2 - -0.66
-0.16 - - - - - - - - - - - - - - - -4.56 - - - - - - - - 5.34 -1.14 -1.84 - -1.77 -5.99 - - -1.76 - -0.28 - -2.4 -1.88 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.36 -2.81 - - - -1.63 - -1.87 - - -0.82 - - 0.4 -1.93 - - - -
- - - - - - - - - - - - - - -1.09 - - - - - - - - - - 5.41 - - - - -5.07 - -1.97 - - -0.42 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.