Heatmap: Cluster_354 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
- - - - - - - - -1.72 4.78 -6.38 - - - - - - - 4.28 -1.13 0.11 - - - - -1.55 - -5.4 -5.53 0.95 -1.6 - -0.97 - - - - - -0.71 - - - - - 0.65 - - - -2.57 - - -1.01 -0.72 - - -0.53
- - - - - - - - - 3.32 - 1.03 -0.5 - - - - - 3.21 -0.77 - 0.23 - 4.49 1.11 -3.1 -0.73 0.75 0.03 1.13 - - - - - -1.95 - -0.49 -1.61 - -1.38 -1.43 - - - - - - - - - - - - - -
-1.16 -1.66 -3.71 -1.91 -6.36 -5.11 -7.7 -2.04 0.71 3.85 -3.01 -1.14 -0.86 0.32 -0.38 -6.86 - -5.43 3.41 -4.48 -0.97 -2.72 -3.57 -2.01 -6.18 -3.06 -5.49 -6.96 -10.26 -10.17 -0.23 -0.61 0.04 0.23 0.02 -0.46 -0.58 0.09 -1.03 0.65 0.27 -0.15 -3.42 -3.82 -2.75 -1.81 -1.74 0.04 -0.41 -0.74 -0.25 1.09 -0.93 -0.63 1.15 1.38
-6.21 -3.32 -6.1 - - -6.72 - -2.57 -2.69 4.66 - -5.92 - - - - - - 4.2 -7.35 -0.36 -4.0 -3.8 -2.78 - -8.38 - - - - -4.59 - -7.06 -6.81 -3.4 -6.27 -4.19 -4.09 -5.25 -3.65 -6.23 -6.09 -5.97 -8.16 -6.17 -0.0 -4.45 2.11 1.97 -5.02 -7.28 - -5.74 -3.19 -4.75 -0.17
-1.11 -2.0 - - - - - -7.69 -11.25 2.92 - - -9.3 - - - - - 0.73 -2.37 -3.83 0.44 -5.59 3.56 -2.18 -2.23 1.49 -3.49 -4.35 -1.5 0.77 1.13 0.5 1.43 0.88 1.08 1.21 1.08 1.4 0.29 0.84 1.37 -3.13 -3.33 -3.14 -3.73 -0.36 - - -0.02 -6.45 -6.31 0.67 -1.02 -4.21 -
-0.29 -1.99 -0.15 -0.34 -0.66 -1.37 -1.43 -0.73 -0.67 3.59 0.35 -1.16 -1.95 -0.85 -0.5 -1.58 - -0.34 3.32 -5.65 0.05 -1.64 -2.78 0.36 -4.76 -2.11 -5.6 -4.12 -5.84 - -1.97 -3.08 -2.08 -2.05 -2.1 -2.33 -1.56 -1.26 -1.5 -0.69 -1.79 -3.22 -1.18 -1.31 -2.07 0.66 -0.6 -0.81 -1.04 1.57 1.63 0.3 1.51 0.76 -0.62 -0.46
-1.6 -1.26 -2.06 -1.58 -5.75 -7.36 - -0.38 -1.26 3.34 - -7.39 -7.4 -2.57 - -7.88 - -5.74 3.73 -5.3 -0.39 -1.57 - -4.36 -5.15 -1.5 - - -6.23 - -0.57 -2.05 -1.61 -1.47 -1.96 -1.75 -1.06 -1.35 -1.63 -0.13 -0.55 -2.03 -5.94 -5.83 -3.88 0.17 -0.6 1.56 1.06 -0.86 -0.95 1.62 -1.46 0.19 3.22 0.32
-2.68 - -1.58 - -0.52 -2.8 - -2.01 -5.39 4.71 - - - -4.09 - -1.9 - - 4.66 - - - -2.59 - - -3.64 - -1.12 - -1.16 - - - - - - - -3.95 - - -3.25 - - -1.2 -3.07 -3.66 -2.5 - -3.7 - -3.51 - -2.68 - - -5.21
0.29 -0.48 - - - -4.98 - - -1.89 3.75 - - - - - - - - 3.63 - 0.38 -1.3 0.62 - - -3.66 - - - - -0.25 -1.59 -0.62 0.12 -0.92 -0.82 -1.27 0.05 -0.75 0.91 0.07 -1.22 -1.68 -2.61 1.41 -0.54 -2.99 2.22 0.68 -2.65 -2.54 -0.1 -1.93 -2.3 1.64 -3.36
- - - - - - - - -0.91 4.62 - - 0.96 - - - - - -0.24 - - 1.67 - - - -1.78 - - - - - - - - - - 2.49 - - - - - - - - - - 2.49 2.57 0.66 - - - 0.41 - 2.19
- - - - - - - - -0.06 4.51 - - - - - - - - 4.62 2.17 - - - - - -1.67 - - - - - - - - - - - - - - - - - - - 1.54 - - - - - - - - - -
- - - - - - - - - 5.35 - - - - - - - - 3.92 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-4.5 1.54 - -3.98 - - - -5.42 -2.57 4.6 - - - - - - - - 4.38 - -0.71 -0.97 - -2.94 - -4.4 - - - - -0.62 -3.89 -1.66 -2.16 -1.86 -3.53 -2.22 -3.39 -1.11 -0.49 -0.59 -0.87 -2.77 -4.71 -4.89 -0.77 0.14 -4.25 -3.42 - - - - - -5.4 -
-3.61 -3.34 - -6.03 -5.1 -4.98 - -3.66 1.68 4.36 -3.42 -4.96 -3.0 -4.72 -5.49 -5.46 - - 4.35 -3.52 -2.79 -0.93 -4.13 -2.89 -3.99 -1.99 -3.8 -6.26 -4.35 -5.21 -1.07 -1.27 -1.12 -0.86 -0.83 -1.14 -1.38 -1.29 -1.36 -1.21 -1.48 -1.46 -1.59 -3.08 -3.82 -1.34 -2.8 -0.48 -0.43 -1.35 -4.25 -3.25 -2.68 -2.92 -4.26 0.18
- - - - - - - - -0.79 4.75 - - - - - - - - 4.28 - -3.29 -18.26 - -1.14 -27.69 -0.43 - - -20.24 - -0.29 - -1.54 -0.96 0.42 -0.06 -1.52 -0.24 -1.54 -3.19 -0.9 0.44 -3.53 - - -12.86 -16.24 - -19.94 - -5.7 - -18.42 -3.34 - -
- - - - - - - - -2.83 4.87 - - - - -3.06 - - - 4.71 - - - - - - -6.57 - - - - - - - - - - - -3.21 - - - - - - - -2.72 - - - - - - - - - -
- - -0.03 0.45 0.8 0.81 - 1.87 -3.86 4.39 - -4.93 -1.5 - -1.67 - - - 4.21 - -1.13 -1.73 - - -2.72 -3.0 - - -4.38 - -3.94 - -2.84 -5.13 -2.51 -4.99 -3.79 -3.42 - -3.28 -4.8 -2.79 -6.31 - -3.87 -1.11 -1.46 -5.32 -3.69 -0.87 -1.88 -1.25 -2.76 -1.53 -2.1 0.28
-1.22 -2.92 - - - - - -2.03 -2.49 4.62 - - - - - - - - 3.74 -0.83 -2.71 -2.77 -0.39 1.42 -1.3 -2.65 0.87 -0.51 -0.15 0.45 -1.28 -2.23 -3.66 -2.49 -3.95 -1.98 -3.74 -2.82 -1.78 -1.02 -1.67 -2.75 -0.04 -2.17 -2.19 -1.58 - 0.28 -0.41 -3.79 -2.09 -2.15 -3.73 -2.91 -2.65 -2.71
-2.23 - -2.12 -2.7 - -2.45 - -2.09 -1.14 4.84 -3.22 -1.35 -0.37 -2.55 -1.71 - - - 2.9 - - -2.16 -0.11 - - 2.24 - - - - - - - - - - - - - - - - -2.08 -0.62 2.24 -1.1 -2.04 -2.9 -1.71 -0.08 -3.0 -0.83 -0.73 -1.14 0.27 -2.35
- - - - - - - - - 5.59 - - - - - - - - 2.36 - - - - - - 1.46 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - -3.88 - -1.06 -3.95 -5.83 5.09 - - - -4.5 - - - - 4.31 - - - - - -3.22 -4.05 -3.05 -3.16 - - -3.73 - - - -4.28 - - - - -3.75 - - -4.25 -5.08 -2.11 - - -4.81 -5.52 - - -2.46 -4.22 -4.24 -4.01 -4.55
- - - - - - - - -2.59 4.73 - - - - - - - - 4.4 - - - - - - -2.53 1.66 - - - - - - - - - - - - - - - - - 0.61 - - - -1.93 - - - - - 1.67 -
- - - - - - - - -5.04 4.3 -0.74 -1.38 -0.39 -2.11 -1.82 - - - 4.33 - - - - - - -1.23 - - - - 1.5 0.7 - -0.44 0.06 -1.71 - -0.13 1.08 - - -0.5 - - -1.61 - - -2.57 -4.2 -0.77 -0.67 -1.68 - -0.82 -1.52 -3.14
-3.27 -4.97 0.0 1.38 -2.15 -1.93 - 1.28 0.01 4.2 - -1.37 -1.09 1.21 -0.42 - - -4.94 3.53 - -0.68 -5.7 - - - -6.89 - - - - -1.49 -3.84 -0.75 -1.18 -2.16 -1.83 -3.24 -0.79 -2.41 -0.31 -1.05 -2.27 -2.98 -3.14 -3.07 -4.18 -2.36 0.36 -0.4 -2.44 -1.76 -0.2 -1.88 -1.49 1.32 1.22
- - - - - - - -0.12 1.01 4.33 - 0.33 -1.77 0.94 0.59 - - - 3.5 - - -2.69 - - - -9.33 - - - - -3.56 - -3.19 -1.69 - -2.74 -2.96 -0.17 -0.96 1.09 -0.64 -4.15 - -1.94 -1.76 - - 0.83 0.68 -3.39 -0.29 0.05 -3.63 -1.41 1.5 1.24
-0.07 -0.55 -3.13 -1.45 -6.35 -4.56 -5.85 -0.86 -1.55 3.62 - -1.88 -3.37 -1.81 -1.16 -3.57 - -5.7 2.97 -0.96 -1.75 -1.8 -3.03 -1.67 -2.62 -1.03 -0.13 -0.29 -1.42 -1.13 0.56 0.95 0.62 0.68 0.39 0.66 0.52 0.47 0.44 0.22 0.54 0.61 0.68 -0.36 -1.34 0.3 -0.55 -0.46 -0.18 -1.77 -0.44 -1.51 -2.8 -3.63 -2.26 -0.04
- - - - - - - - -1.36 4.27 - -1.99 -3.0 - -2.39 -0.46 - - 3.85 - 0.43 0.88 -0.57 - -0.32 0.4 -0.16 - - -1.31 -2.13 - -0.56 -2.84 -3.06 -1.03 -1.25 -2.26 -3.42 -1.34 -3.27 -0.91 -3.33 -4.19 - -2.02 0.52 0.05 -0.12 0.97 0.49 -2.13 -2.32 -0.49 0.69 -
1.48 0.55 - -4.4 -3.9 - -2.44 0.28 -3.14 3.88 -1.74 -1.91 -1.49 -2.92 -2.36 -2.74 - - 3.09 0.91 -0.27 0.45 1.28 1.63 -1.88 -0.38 0.57 -0.54 -0.09 -1.58 -0.57 - - -1.23 0.41 -0.38 - -0.84 - - -0.81 - -1.0 -2.02 -2.51 -2.26 - -2.26 -2.67 -0.94 0.0 0.1 - -0.7 1.02 -1.54
- - - - - - - - - 5.56 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.16 - - - - - - -
- - - - - - - 1.61 2.54 5.09 - 0.7 - - - - - - 1.55 - - 0.46 - - - -2.89 - - - - - - 1.44 - 0.28 - - - - - - - - - - 0.65 - -0.05 - - - - - - - -0.97
-2.47 0.05 - - - - - -3.58 -0.85 3.15 - -4.72 -3.98 - -5.58 - - - 2.13 0.73 -1.79 -1.12 -2.94 0.8 1.52 -0.13 0.64 1.61 0.89 1.31 0.84 0.8 0.87 0.61 0.67 0.14 0.38 0.59 0.61 0.39 0.54 -0.22 -0.34 -1.19 -1.38 -1.42 -1.07 -1.17 -0.94 -0.41 -1.82 -2.72 -0.54 -0.76 -2.45 -2.93
-1.13 1.58 0.1 -0.11 -0.19 -2.12 -3.05 1.15 -0.29 2.7 -0.95 0.29 0.72 0.12 0.5 -3.92 - -1.95 2.29 -1.99 0.35 0.18 -0.36 -1.26 -0.85 -0.63 -2.03 -2.56 -2.15 -2.39 -0.3 -0.88 -0.34 -0.16 -0.54 -0.02 -0.3 -0.19 -0.19 -0.13 0.12 -0.63 0.28 -0.43 -0.24 0.38 -0.11 0.32 0.03 -1.21 -0.17 0.04 -1.2 -1.02 0.68 -0.5
- - - - - - - - -1.27 4.98 - - - - - - - - 3.79 -1.72 0.08 - - - - -4.47 - - - - -2.41 -2.33 - -2.12 - -2.4 -2.97 -2.55 -3.06 -2.95 - -1.22 -0.48 -2.7 -1.73 -3.11 -1.16 -1.58 -2.67 -0.58 1.26 0.03 -2.55 -1.87 -3.21 -3.21
-0.77 0.15 -2.66 -2.12 -3.09 -2.81 -1.57 -1.28 -0.96 3.13 -2.22 0.18 1.45 0.27 0.01 -6.89 - -1.78 2.95 -2.58 1.47 -0.58 -4.26 -2.05 -3.0 -1.65 -4.78 -3.99 -4.66 -4.93 -0.46 -0.87 -0.31 -0.06 -0.57 -0.26 -0.12 0.11 0.12 0.1 -0.3 -0.8 -2.59 -1.99 1.49 2.13 -0.28 -0.25 -0.47 -0.57 -0.67 -0.44 -1.06 -0.93 0.2 -0.85
-2.78 -2.77 - -5.72 - - - -4.47 0.9 4.29 - -4.65 -6.93 - - - - - 3.09 -3.18 -3.15 -3.03 -3.83 -3.09 -2.32 -2.18 -1.83 -2.46 -3.23 -3.72 -0.63 0.04 0.27 -0.01 0.24 -0.3 -0.64 -0.79 -1.25 -0.35 0.01 -0.96 -0.05 -0.54 -1.5 -3.86 -1.81 0.5 1.03 -1.71 0.01 -0.42 -1.6 -1.97 0.16 2.25
- - - - - - - - - 4.09 - - - - - - - - 1.67 - - - -0.62 - - -2.29 - - - - 1.14 1.54 2.03 0.01 1.57 0.57 0.73 2.44 1.14 0.6 1.09 -0.47 -1.82 -1.42 - - - - - -0.05 -0.12 0.71 -1.79 0.28 -0.01 -
- - - - - - - 1.25 - 4.94 - 2.42 - - - - - - -0.23 - 1.92 - - - - -2.51 - - - 1.76 - - 1.82 - - - - - - - - - - - - 1.39 - - - - - - - - - 1.68
- - - - - - - - 0.09 3.98 - - - - - - - - 2.42 - 1.54 1.91 - 2.3 - -0.58 - - - - - - - - - 1.27 - - - - - - - - - 2.08 3.63 0.38 0.28 - - - - - - -
- -1.42 - - - - - - -0.69 4.81 - -4.62 - - - - - - 3.96 - - 0.13 - -2.7 - -0.49 - - - - -3.59 -4.83 - -3.68 -3.13 -2.95 -2.59 -3.16 -3.17 -3.54 -4.78 - - - - -2.47 -0.02 1.33 0.94 -4.04 -4.85 -4.92 -5.11 -2.15 -3.17 1.25
- - - - - - - - -2.93 4.78 - -4.75 -4.7 - - - - - 4.04 - - - - -4.05 - -4.88 - - - - -1.74 -0.5 -1.76 -1.7 -1.13 -1.5 -1.04 -0.85 -1.41 -2.32 -1.16 -1.05 -3.88 -4.39 2.26 -2.85 -3.85 -3.06 -3.67 -2.04 -2.68 -3.44 -2.81 -2.1 -1.58 -1.94
-1.3 - - -3.26 -4.45 0.75 -1.8 -1.45 -1.2 4.21 - - -1.27 -0.9 -1.68 -1.52 - - 3.64 -0.48 - -0.25 - -1.87 -0.15 -1.75 -0.2 -1.9 -2.01 -0.62 -0.87 -1.21 -1.18 -1.37 -1.94 -3.95 -1.31 -0.69 -4.05 -1.91 -2.08 - -2.24 -4.83 -2.33 -1.41 0.77 -0.11 -0.12 0.2 0.55 -0.06 -0.17 -0.4 0.07 -0.47
- - - - - - - - -2.45 5.03 - - - - - - - - 2.99 - - - - - - -0.32 - - - - -0.36 - 1.94 1.2 - 1.03 - - - - - - - - - - - - -1.61 - - 2.36 - - - -
- - - - - -1.24 - - -0.89 5.3 - - - - - - - - 3.15 -1.7 - -2.29 - - -0.4 -1.21 0.93 -1.35 0.33 -0.8 -2.26 - - -3.23 -3.03 -3.08 - - - - - -1.75 - - - - - - -4.14 - - - - - - -
-1.89 -4.72 - - - - - -5.42 0.36 4.46 - - -2.12 - -4.73 - - - 3.94 0.02 -2.52 0.2 -4.52 0.27 0.5 -1.11 -0.52 -0.11 -0.37 -0.35 -1.57 -2.19 -1.96 -1.21 -1.43 -1.25 -1.91 -1.39 -2.0 -2.57 -2.2 -1.71 - - -5.57 0.6 1.07 -2.25 -2.35 -4.16 - - -3.07 -4.61 -3.86 -2.78
- -6.33 - - - - - - 1.25 5.09 - - - - - - - - 4.16 -4.11 -5.12 -2.72 - -1.54 -2.97 -4.03 -6.13 -6.24 -5.37 -6.28 -4.2 -5.57 - -7.13 -6.92 -7.35 - -7.48 -7.39 - -7.24 - -4.84 -7.16 - -3.0 -2.04 -3.32 -3.56 -5.14 -7.17 - -4.5 -7.13 - -3.59
-1.44 0.06 -4.56 -2.87 -5.47 -5.31 - -2.05 -0.95 3.18 - -2.65 -1.37 -2.63 -2.14 - - - 3.1 -2.74 1.54 -1.06 -3.73 -2.82 - -3.11 - -5.6 - -5.89 -1.33 -1.94 -1.44 -1.34 -1.35 -1.43 -1.09 -0.78 -1.07 -0.57 -1.48 -1.24 -2.61 -2.03 1.56 1.99 -0.99 1.36 1.04 1.05 -0.16 0.78 1.06 1.4 1.6 -0.02
- - - - 3.38 - - - - 5.06 - - - - - - - - 3.61 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - -3.76 4.63 - - - - - - - - 4.31 - 0.72 - - - - - - - - - - - - - - - - - - - - - - - - 3.0 0.81 - - - - - - - - -
- - - - - - - - - 5.01 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.57 - - - - - - - - - - - -
- - - - 4.48 - - - - 4.71 - - - - - - - - 2.9 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 1.35 - - - - - - -0.82 3.81 - - - - - - - - 2.97 - 1.56 - - - - 0.09 - - - - 0.56 - - 0.86 - 0.33 - 1.29 - - - 0.44 - - 1.07 0.48 1.64 - - - 1.52 1.55 - 0.23 2.19 -0.94
- - - - - - - -5.09 0.84 4.73 - -2.69 - -4.11 - - - - 4.36 -1.15 -3.19 -2.44 - 0.6 -1.77 -5.1 - -4.3 -3.44 -4.34 -1.1 -2.46 -3.65 -2.87 -2.61 -2.11 -1.92 -1.51 -1.32 -1.3 -1.18 -2.27 -2.9 -6.23 - - -1.29 -3.19 -3.54 -4.5 - - -3.77 - - -5.08
- - - - - - - - - 5.81 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - 0.99 4.28 - - - - - - - - 4.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.12 1.19 -0.14 1.03 1.0 1.83 1.66 0.45 0.1 -1.56
-4.93 - - - - - - - -0.21 5.02 - - - - - - - - 4.38 -6.07 - -2.02 - -1.18 - -4.3 - - -3.5 - -4.1 - - - -5.75 - - - -4.69 -5.57 -3.68 -3.81 -4.96 - - -3.37 -2.39 -4.17 -3.41 -4.55 -6.0 - -3.43 - - -3.55
- - - - - - - - - 5.81 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.53 - - - - - - - 1.3 4.1 - - - - - - - - 4.27 -0.9 - -0.9 - -0.23 -1.6 -2.23 -0.85 -0.96 - -0.59 - - - - - - - - - - - - - -3.24 - -1.01 -0.76 -0.36 -0.14 -0.93 1.16 1.05 -0.47 -0.26 1.4 -1.8
0.01 -0.17 0.36 0.63 0.02 -1.14 -0.68 0.34 0.0 2.77 -0.62 0.39 0.25 0.71 0.52 -1.91 - -0.6 2.24 -2.94 -0.66 -0.45 -1.65 -2.54 -3.3 0.47 -4.08 -4.19 -3.61 -4.87 0.24 -0.41 0.04 0.04 -0.37 0.06 -0.31 0.3 0.16 0.56 0.66 -0.13 0.26 -0.54 -0.28 0.57 0.14 0.05 -0.06 -1.2 -1.35 -1.2 -1.4 -0.61 -0.4 0.36
-4.04 -3.15 0.2 -3.03 -2.23 -4.04 - -1.27 2.19 4.17 -1.08 0.32 -0.21 0.38 0.93 - - - 4.01 -5.18 -3.89 -0.18 - -3.0 - -0.55 - - - - -4.9 -3.97 - - -2.85 -4.8 -4.19 -3.05 -3.62 -4.65 -4.61 -2.92 -1.57 -1.21 -2.68 -2.07 -0.05 0.82 0.51 -2.88 -3.93 -2.97 -3.52 -5.06 -2.58 -0.24

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.