Heatmap: Cluster_122 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Ovary
Microspore
Generative cell
Pollen
Sperm cell
Pollen grain
Pollen tube
Pollen tube (1.5h)
Pollen tube (3h)
Pollen tube (9h)
Pistil
Style (before flowering)
Style (after flowering)
Style (pollinated, after flowering)
Flower (buds)
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Pericarp/Exocarp (4 DPA)
Pericarp
Pericarp (5 DPA)
Pericarp (7 DPA)
Pericarp (10 DPA)
Fruit (mature green)
Fruit (breaker stage)
Septum (7 DPA)
Septum (10 DPA)
Septum/Seed (4 DPA)
Seed (5 DPA)
Seed (7 DPA)
Seed (10 DPA)
Seeds (10 DPA)
Seeds (20 DPA)
Seeds (30 DPA)
Seeds (Pk-stem)
Seeds (Br-stem)
Seeds (Pk-equatorial)
Seeds (Pk-stylar)
Seeds (Br-stylar)
Seeds
Seeds (RR)
Seeds (LR)
Seeds (MG-equatorial)
Hypocotyl
Seedling (leaves)
Seedling (roots)
Callus
Meristem (vegetative)
Meristem
Apical meristem
Leaf
Root
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
Root hair cells
Solyc01g014300.1.1 (Solyc01g014300)
- - - 3.38 - - - - - - - - 4.38 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.19 - - - 3.08 - - - - -
Solyc01g057940.1.1 (Solyc01g057940)
1.38 0.78 - 3.89 - - 1.99 - -2.07 -0.02 -0.14 -1.79 - -1.08 - - 0.79 - - - - - - -2.71 - - -1.17 - -0.58 -0.02 1.02 -2.08 0.24 2.17 1.43 - - 0.03 - - - - - - - 0.7 - - 1.94 -1.24 - 2.07 2.64 - - - - -
3.02 1.34 - - 1.93 - - - - - - - - - - - - - 2.71 - - 2.0 - - - - - - - - - - - - - - - - - - - -1.25 - - - - - - 2.18 - - 4.53 2.29 - - - - -
Solyc01g079120.3.1 (Solyc01g079120)
- - - - - - - - - - - - - - - - - 3.89 - - - - - - - - - - - - - - 0.28 - - - - 2.42 - - - 2.12 3.54 - - - - - 0.64 - - - 3.3 3.22 - - - -
Solyc01g094100.2.1 (CYP704A2)
-1.72 -4.0 -3.93 5.37 -2.36 - -0.19 - -7.84 - -6.56 - -2.76 -1.74 0.31 0.21 -1.01 -0.31 - - - - -5.8 - -6.73 -4.58 - -4.77 - -4.6 -3.93 -4.26 -6.8 - - - - - - - - -6.79 - - - -1.78 0.38 - -2.7 -5.03 -2.33 1.4 2.6 -5.32 - - - -
Solyc01g107370.3.1 (Solyc01g107370)
-5.59 -1.28 -0.57 -0.51 -1.96 -2.9 -5.02 -3.08 -4.22 -3.72 -3.61 -4.14 1.6 -2.16 -1.76 -2.52 2.78 -1.81 - -0.5 -1.59 -1.08 1.67 -0.53 -2.54 -5.25 -3.45 1.69 -3.51 -1.74 -0.17 -1.26 -2.07 0.27 0.04 -1.49 -3.27 -3.09 -3.23 - - -2.77 -4.09 - -1.67 -1.58 -1.21 -3.67 -3.92 0.42 1.03 4.19 2.05 -3.73 -2.08 0.44 0.7 -1.93
Solyc01g109010.3.1 (Solyc01g109010)
-0.63 -1.44 0.07 2.83 -2.07 - - -1.46 -1.8 -4.4 -3.85 -4.05 -1.91 0.88 0.86 0.4 -0.98 -0.71 -1.35 -3.09 -0.94 1.34 -0.79 -0.59 -0.93 - - -0.84 -1.34 -0.86 -0.39 -0.75 -1.41 - 2.83 0.81 -0.37 0.32 -0.62 -0.15 -0.63 -0.14 1.77 -0.0 0.64 2.24 - -0.94 0.16 -2.26 -0.3 -0.13 0.55 -0.81 -0.49 -0.68 -1.98 -0.1
Solyc02g031920.4.1 (Solyc02g031920)
- - - 1.14 -2.96 - -2.01 -7.32 - - - - -6.59 - -5.42 - 0.68 2.24 - - -5.98 -0.71 - -6.33 - 1.01 -2.98 -6.01 -6.61 - - -8.04 -6.27 - - 0.2 -1.18 0.21 -1.92 -0.2 0.07 -0.05 -0.85 -1.3 1.0 -0.22 -1.57 -4.29 - -6.43 -2.78 -0.18 5.13 - - - - -
Solyc02g032620.1.1 (Solyc02g032620)
- - - 1.76 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.59 1.6 - - - - 5.46 1.28 - 1.16 -
1.19 3.02 - 0.9 - - - - - - - - -0.66 -1.39 1.28 0.61 0.1 -0.71 - - - - - -2.49 -0.88 - -1.99 - - - - -0.7 -2.51 - - - - - - - - -2.19 - - - 1.81 -2.29 2.91 -0.73 - -1.24 1.82 3.87 2.75 - - - -
- - 0.37 2.37 - - - 0.16 -2.24 - - - - - - -1.21 - -0.49 - - - 1.77 - -1.84 -0.43 3.25 -0.78 - - - -0.11 - - - - - - - - - - - - - - 1.81 - 4.71 0.62 - - - 1.26 - - - - -
- - - 1.01 - - - - - - - - -1.31 -0.52 - - 2.59 -2.65 - -1.67 -2.1 - 1.84 -0.6 -3.22 - - 2.04 -0.81 0.71 0.29 -1.42 - - - - - - - - - - - - - -0.36 0.52 2.57 0.72 - - 2.84 2.06 2.72 2.74 -1.24 - 0.15
-3.59 - -2.89 2.01 - - - -0.28 -1.09 - - - -4.95 -2.11 -5.74 -3.33 2.21 0.41 0.67 1.12 1.39 -1.6 2.23 1.6 0.92 -4.14 -2.8 1.68 -0.01 0.78 -3.14 -0.33 -1.17 - - 0.7 - - - - - -2.54 - - -1.66 -2.06 -1.49 - 2.8 -0.06 -2.69 1.92 2.65 -4.02 - -3.22 0.38 -
Solyc03g150114.1.1 (Solyc03g150114)
- - - -0.64 -0.14 3.02 -2.31 2.55 1.09 3.23 3.36 3.29 -0.06 - - -2.48 0.14 0.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - -3.25 -2.27 - -2.41 - - 1.75 1.85 - - - - -
Solyc04g007010.3.1 (Solyc04g007010)
-2.25 -3.36 -5.03 1.5 -1.2 -4.65 -1.99 -7.74 -6.09 - -9.13 -7.75 -3.66 -0.63 0.86 0.23 1.1 1.46 -4.09 -2.18 -2.69 - -1.56 -1.78 -2.5 - - -2.16 -1.01 -2.85 -3.13 -0.99 0.34 0.57 1.64 -4.14 - - - - - -8.37 - - -4.52 -1.07 1.53 -2.79 -3.7 -4.64 0.39 1.63 4.83 -1.48 - - - -
Solyc04g011760.3.1 (Solyc04g011760)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.56 5.82 - - - -
Solyc04g014340.1.1 (Solyc04g014340)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.75 - - - 2.27 4.71 - - - -
- - -2.45 2.8 -2.57 - -2.13 - - - - - -2.93 0.84 1.34 0.35 1.35 3.36 - -4.26 -2.07 - -3.84 -2.73 -1.34 -1.37 -1.42 -2.36 -0.72 -2.42 -2.86 -1.04 0.29 - - - - - - - - - - - - - -4.8 - -3.66 - -3.05 2.56 4.41 - - - - -
- - - - 1.28 - -1.32 -2.3 -3.11 1.74 1.52 1.85 - -1.69 -2.89 - - -2.18 - - - - -1.85 -3.87 -2.93 -2.72 - -3.29 -1.38 -0.09 -3.74 -0.16 2.02 - 3.47 1.43 2.56 1.08 1.3 1.19 0.3 1.36 -0.7 1.34 0.93 - - - 0.14 -3.18 - - -0.48 - - - - -
Solyc05g045953.1.1 (Solyc05g045953)
- - -2.36 0.62 2.9 - 4.26 - - - - - 0.75 -1.87 - - - -3.06 - - - - - - - 0.35 -2.3 -0.96 - 0.27 -1.54 -1.06 -2.41 - - - - - - 0.09 - -1.99 - - - - 0.63 - 1.19 -0.04 2.8 1.74 2.71 - - - -1.08 -
Solyc05g045957.1.1 (Solyc05g045957)
- - - - - - - - - - - - -0.59 2.97 -0.76 -1.52 - -1.68 1.46 - - - - - -0.25 - - - -0.26 1.59 -0.4 0.4 3.31 - - - - 0.87 - 1.47 - 0.68 - - - - - - 2.04 - - 2.03 3.73 0.19 - - - -
- - -1.66 1.5 -2.55 - - - - - - - -4.45 -1.71 -1.1 -1.03 1.08 0.28 - - -3.66 - - -5.63 - - - - - -2.92 - - - - - - - - - - - - - - - 0.85 2.46 -1.29 -2.72 - 0.81 3.08 4.99 - - - - -
Solyc05g046220.1.1 (Solyc05g046220)
- - - - - - - - - - - - - - - - - 3.32 - 0.46 - - - - - - - - - - - - - 3.03 - - - - - - - - - - - - -0.05 - - - - 0.25 5.18 - - - - -
Solyc06g005780.1.1 (Solyc06g005780)
0.25 -4.25 - 1.79 -0.86 - - - - - - -6.18 -1.59 -4.41 - - 2.78 2.22 -3.1 - - - - - -4.84 - -4.84 - -4.82 - - -6.68 -3.34 - -2.52 - -2.67 -0.6 - -2.23 -0.58 -2.27 -2.44 -1.54 -2.74 -1.42 2.39 - -4.34 -5.19 0.73 2.85 4.5 - -4.07 - - -0.93
Solyc06g050820.3.1 (Solyc06g050820)
- - - -0.8 - - - -2.76 -3.14 - - - -1.71 3.87 2.11 1.76 - - - - -2.39 - - - -3.04 - - - - - - - -1.28 - 1.39 -0.53 - 1.18 1.19 0.69 - -0.87 1.92 1.23 - 3.56 - 0.05 -2.56 - -1.95 - 2.14 - - - - -
Solyc06g050825.1.1 (Solyc06g050825)
- - - - - - - - - - - 0.27 - 0.66 - - - - - - - - - - - - - 2.85 - - - - - - 5.23 - - - - - - 2.11 - - - - - - - - - - 2.64 - - - - -
Solyc06g066840.3.1 (Solyc06g066840)
- - - 1.86 -0.77 - -2.42 - - - - - -5.09 -5.47 -3.78 -4.84 1.77 2.19 - - - - -6.58 - - - - - - - -5.86 - - - - - - - - - - - - - - -1.71 3.47 -1.59 -3.62 -1.22 1.6 3.34 4.26 -2.09 -1.36 -5.68 -3.45 -2.42
-1.12 -2.39 -0.52 2.37 2.51 -2.66 0.07 -4.93 - -1.92 -2.33 -4.12 0.51 1.77 1.04 0.96 -0.15 -0.5 -0.31 -1.8 -2.19 1.16 -3.12 -2.8 -1.81 -2.89 -1.4 - - -2.83 -2.02 -3.06 -2.17 - - 0.58 1.35 0.68 0.57 0.37 -0.05 -0.3 1.3 - 0.83 -0.17 -0.4 -1.04 1.86 -1.15 0.32 0.38 1.95 -1.17 -1.23 -1.62 - -
Solyc06g082030.3.1 (Solyc06g082030)
0.85 1.04 2.01 -0.56 -5.86 - - -10.81 - - - - 1.6 -1.5 -2.1 -1.48 0.06 1.33 1.59 1.37 -1.43 -4.16 0.57 -0.66 -0.54 -1.73 0.47 -0.84 -2.07 -1.71 0.29 -1.26 -0.26 0.12 1.87 -0.67 -2.55 -3.58 -3.23 -2.26 -3.81 -1.51 -3.23 -2.19 0.27 -0.79 -1.56 0.67 -0.02 -1.97 0.08 1.25 0.8 1.91 0.03 -0.45 2.2 -0.16
Solyc08g023660.3.1 (Solyc08g023660)
-7.12 - -7.6 1.93 -1.57 - -1.24 -7.43 - - - - -6.15 -2.7 -2.62 -3.63 2.65 1.63 - - - - -7.93 -9.6 -6.14 -5.64 - - -4.09 - - -7.98 -5.12 -3.71 -4.38 -3.3 - - - - - -6.57 - - -4.01 -2.58 2.41 -3.54 -5.89 -5.55 0.83 1.66 5.03 -6.36 - - - -4.98
Solyc08g078640.3.1 (Solyc08g078640)
-5.23 -1.7 -0.37 -1.11 -5.0 - -7.59 - - - - - 0.36 -2.08 -7.06 -7.43 2.54 -2.54 0.3 2.27 1.16 - 1.68 0.8 -0.55 -6.84 - 2.4 -1.11 1.13 2.34 1.06 -0.38 -0.27 -0.09 -3.76 - -8.07 - - - -8.98 -6.96 - -7.11 -0.07 -2.68 -1.34 -3.19 1.4 -0.76 2.24 1.67 -1.03 -3.19 0.66 0.89 -1.3
Solyc08g083000.2.1 (Solyc08g083000)
2.82 - - 2.48 4.45 - - 0.66 0.22 - - - 2.73 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.28 - 3.21 - - -
Solyc09g008087.1.1 (Solyc09g008087)
- - - - 3.84 - - - - - - - 1.26 - - 1.93 - - 3.94 - - 2.1 - - - - - - - - - - - - - - - - - - - - - - - - - - 3.39 - - - 1.1 2.37 - - - -
0.1 -0.38 0.66 -2.41 - - - - - - - - -0.81 -1.2 -0.71 -0.72 0.87 -0.9 1.17 1.13 0.71 - 2.84 2.08 0.47 - - 0.9 -1.1 -0.42 0.79 0.09 -1.37 - -0.44 -3.99 - - - - - -5.41 - - - 0.68 1.09 0.31 -5.54 0.87 0.81 1.73 2.05 -1.18 0.27 -0.45 -2.15 2.4
- - - 2.82 -0.06 - -1.29 -3.38 -4.24 - - - -4.44 -1.4 -3.23 -4.68 1.93 -0.2 - - -5.72 - -3.61 -6.17 -4.09 - - - - -5.29 -3.46 -5.09 -4.7 -2.66 - - - - - - - -6.75 - - - -1.71 3.1 -3.45 -2.61 -3.49 1.76 -1.92 4.94 -5.45 - -5.04 -4.19 -
Solyc10g047390.1.1 (Solyc10g047390)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.92 - 4.1 - - - - 5.06 - - - -
- - - 5.08 - - - - - - - - -0.2 - - - 0.5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.48 0.84 - 0.01 2.66 2.5 -0.5 2.53 - - - - -
- - - 1.82 - - - - -1.24 - - - 1.01 -2.42 -0.4 0.11 0.32 0.63 - - - - - - 0.3 3.05 -0.22 - - - 0.55 0.67 1.75 3.4 - - - - - - - -1.25 2.06 - - - - - 3.39 - 0.84 - 1.58 -21.71 - - - -
Solyc12g016110.1.1 (Solyc12g016110)
- - - - - - - - - - - - 1.76 - - - - - - - - - - - 1.14 - - - - - - - - - - - - - - - - 0.12 - - - - - - - - - - -2.38 5.5 - - 2.55 -
Solyc12g040340.2.1 (Solyc12g040340)
- - - - - - 3.91 0.57 3.14 - - - - - - - - - - - - - - - - - - - - - - - 2.52 - - - - - - - - - - - - - - - 4.4 - - - 2.54 - - - - -
Solyc12g041960.2.1 (Solyc12g041960)
- - -3.72 1.47 -0.65 1.94 -1.26 1.52 1.43 1.51 1.39 1.47 -3.44 0.37 2.45 2.52 1.67 0.62 - - - - - -7.3 - - - - - - -5.56 -5.8 -3.4 -2.39 - - - - - - - - - - - -1.37 1.85 -3.99 -3.14 - 0.27 2.46 2.97 - -4.67 - - -3.58
Solyc12g055880.3.1 (Solyc12g055880)
1.48 1.5 - 3.09 - - - - -1.61 - - - - - - - - - 2.87 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.23 - - - - - - 5.08 - - - - -
Solyc12g055890.3.1 (Solyc12g055890)
2.62 - - 3.58 - - - - -2.13 - - - 0.0 - 0.11 - - - - - - - - - - - - - - - - - - - - - - 1.23 - - - -0.93 - - - - 2.81 - 3.3 - - 2.2 3.73 - - - - -
Solyc12g077623.1.1 (Solyc12g077623)
- - - - - - - -1.31 1.08 2.95 3.15 2.31 0.76 - - - - -0.66 - - 0.12 - - - - 1.38 - - 0.25 - -0.7 0.86 3.99 - - - 2.49 - - - - -0.85 - - - - - - 1.09 - - - -3.32 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.