Heatmap: Cluster_229 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - -5.65 - - - - - 2.35 -0.88 - -1.09 - 2.52 - - 1.93 - - 3.41 - - -2.56 - - 3.38 - - - - - -3.42 -4.99 - -
Zm00001d001792 (GRMZM2G064139)
- - 2.0 - -0.09 -1.95 -2.54 -4.61 - - 1.07 -0.47 - 0.88 -4.49 1.23 -4.58 -1.05 1.57 1.81 0.41 - - -5.85 -2.01 - 2.76 1.43 - - -1.66 -0.38 -2.64 -3.83 - -1.85 2.29
Zm00001d002533 (GRMZM2G405064)
- - -4.01 0.15 0.48 -1.35 0.84 -3.17 - - 1.1 0.96 - 2.0 -2.76 2.0 1.8 -2.4 1.3 -1.69 -2.18 -0.32 -1.06 -8.17 -1.76 -0.04 -2.31 2.12 - -0.29 -0.61 -3.39 0.15 -6.67 -1.44 0.53 0.68
Zm00001d003192 (GRMZM2G390773)
- - - 1.55 -4.3 - - - - - - -3.33 - - - 3.36 - - - -3.09 -3.3 - 3.89 - - 2.06 - -2.77 - 1.56 - - -0.14 - - -4.15 -1.35
Zm00001d005891 (GRMZM2G138454)
- - - - 4.29 -1.22 - - - - - -0.68 - - - 3.79 - - - 1.36 - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - 0.37 0.21 - - - - - -1.16 - - - 2.75 4.16 - -1.56 - - - - - - - - - - - - - - - - 1.19 2.78
Zm00001d009588 (GRMZM5G839976)
- - 1.8 - -1.28 - - - - - - -1.54 - - - -0.12 - - - - - - - 1.7 - 3.25 3.66 1.97 - - - - -2.17 - 0.94 -1.26 -
- - 0.95 - -0.19 -1.24 -1.66 - - - 0.27 -0.2 - - -3.03 2.75 3.26 - -0.74 0.99 -2.78 2.45 - -5.85 -5.18 1.16 0.8 -0.06 - - - - -2.48 -6.71 -8.45 -0.45 -0.26
Zm00001d009953 (GRMZM2G081486)
- - 2.26 - -1.52 -4.51 -4.34 - - - 0.89 -0.53 - - - 2.43 -3.14 -4.05 -4.64 - 2.68 -1.66 - - - - 3.47 2.03 - - - - 0.53 - -3.13 -6.42 -2.72
Zm00001d012384 (GRMZM2G348100)
- - 3.32 - -0.6 - - - - - - -1.32 - - - 2.69 -0.41 - - - -1.77 - - - - - 3.76 -0.53 - - - - - - - -0.4 1.76
- - - 1.27 0.91 -2.14 -0.98 - - - - -1.52 - -1.05 -3.44 1.18 - -1.21 -2.41 - 0.42 - - -3.55 -0.04 3.2 - 2.97 - 2.23 - - 1.23 -1.89 -1.12 -0.58 -1.49
Zm00001d016907 (GRMZM2G404769)
- - -0.33 - 0.39 1.49 -1.18 - - - 0.56 0.45 - -0.03 -3.29 1.23 0.97 -7.14 1.04 -4.92 0.36 -2.52 -2.0 -5.91 -3.99 2.16 2.38 1.85 - 1.43 -7.93 - -0.27 - -4.6 0.21 0.6
- - 2.73 3.35 0.99 -3.0 - - - - 0.96 0.27 - - -2.27 1.51 -0.88 - -0.63 -5.24 -4.27 - - -2.66 - - 2.27 -5.28 - - - - 0.93 -1.35 -5.79 -0.83 1.46
Zm00001d020797 (GRMZM2G150780)
1.8 - - - 0.87 - - - - - - -0.62 - - - -0.09 - 2.08 -0.66 1.94 -0.07 - - 0.97 -0.47 - - -0.16 - 3.51 1.96 - 0.41 - - -1.87 -
Zm00001d021501 (GRMZM5G871542)
- - 1.86 - 0.69 - - - - - - -0.5 - 2.68 - 1.17 - - -4.58 1.05 0.99 - 1.25 - -1.58 - 1.74 -1.88 3.03 - 0.13 - -0.72 -3.69 -7.26 -2.07 0.83
Zm00001d021789 (GRMZM2G057724)
-4.82 - 0.13 - 1.51 - - -4.12 - - -0.63 -0.12 -1.64 - -6.7 2.6 - -4.54 - - 2.27 - - - -3.38 -2.07 1.42 3.24 - - 0.47 - 1.9 -3.01 -6.76 -1.82 1.1
Zm00001d021982 (GRMZM2G357734)
- - -0.28 - 0.89 -0.26 -0.01 -1.07 - - -0.11 -0.61 - 0.18 -2.67 1.26 -0.94 -4.37 2.02 -0.62 1.33 -0.63 - 0.23 -2.12 -1.53 2.22 1.25 - 1.49 0.98 - 0.11 1.05 -0.62 -0.12 -
-4.07 -1.15 -3.13 0.21 -0.53 0.3 - 0.12 - - 0.44 0.07 - 0.51 -3.5 0.88 -1.88 -1.79 -1.01 -5.46 -0.07 -0.09 2.51 0.85 0.06 -0.32 - 2.73 - 0.17 0.37 0.17 -1.02 - -0.42 -3.08 1.39
Zm00001d024127 (GRMZM2G371345)
-3.62 -3.46 1.49 -0.91 0.06 -1.44 -1.5 -0.98 -2.31 -2.41 -2.19 -0.92 -3.42 2.48 -1.15 0.36 -0.89 -1.0 0.65 1.62 -1.1 -1.47 -1.1 -1.94 -1.75 -1.08 0.65 0.12 2.46 1.45 -1.45 -0.14 -2.1 -1.47 -0.66 -0.99 -0.41
- - - - 0.88 - - - - - - 0.03 - - - 4.9 - - - - - - - - - - - - - - - - - - - 2.1 -
- - - - 2.39 - - - - - - -1.33 - - - 1.87 - - - - - - - - - - - 4.41 - 2.64 - - - - -2.54 - -
- - - - 0.04 - - - - -0.64 - -4.39 - - - 1.38 - -0.06 0.83 1.1 3.67 - - - - - - 3.87 - - - - -3.21 - -1.52 - -
Zm00001d027476 (GRMZM2G086707)
- - - 0.82 -0.57 -4.6 -1.13 - - - - -1.13 - - -3.28 1.09 - - 0.01 -0.81 2.12 - - - -0.06 1.12 -2.28 -1.6 2.33 3.44 0.3 - -0.32 - 1.09 -3.91 0.76
- - - - 2.45 - - - - - - 0.95 - - - 1.53 - - - 1.62 - - - - - - - 4.51 - - - - - - -0.24 - -
Zm00001d029841 (GRMZM2G458718)
-7.25 -6.45 -0.42 - -0.04 -1.91 -0.93 0.58 -6.06 - 1.1 -1.83 - - -3.41 0.76 1.36 -4.79 0.38 -4.37 0.71 0.54 - -0.8 -3.05 1.13 1.63 2.42 -0.7 2.56 1.26 - -1.08 -7.99 -2.28 -0.86 -2.3
Zm00001d029959 (GRMZM2G067257)
- - 0.49 - 0.5 - - - - - 1.17 -0.45 - 2.61 -5.01 1.26 -2.28 -3.59 -1.47 -1.92 -0.42 - - 0.53 -2.75 1.52 3.59 1.05 - -0.66 -0.58 - -1.28 -3.69 -2.85 -1.0 -
- - 1.71 - -0.59 - - - - - - -1.95 - 2.29 - 0.63 - - - -1.56 0.59 - - - -1.71 3.22 2.85 2.4 - - -0.28 - -0.8 - -5.4 -2.06 -0.41
-3.56 -1.06 -1.69 - 0.81 -3.93 -3.35 -1.34 -2.37 -2.63 1.85 0.16 - 1.92 -2.27 1.72 -1.82 - 0.12 - 0.62 - -1.32 -4.31 -0.38 - -0.16 3.29 - - 0.04 - 1.18 -0.27 -1.95 -0.52 0.61
- - - - 3.33 - - - - - - 3.63 - - - 3.86 - - - - - - - - - - - - - - - - - - - - -
Zm00001d032087 (GRMZM2G307892)
- - -5.89 -2.42 -0.27 - -6.17 -4.69 - - -1.93 0.8 - - -7.13 2.24 -1.39 -3.56 1.78 -6.11 2.67 -2.73 - -1.49 -6.26 1.49 - 3.37 0.06 -2.46 -4.68 - 0.98 -0.27 -6.32 -0.8 -0.8
- - - - - - - - - - - -2.97 - - - 3.22 - - - 3.65 - - - - 3.48 - - - - - - - - - 1.93 - -
- -7.22 0.01 -1.07 -0.22 1.25 0.21 -0.48 - -5.53 -0.33 0.37 - 0.58 -5.15 0.57 0.65 -5.68 0.65 -7.05 0.62 0.03 0.15 -9.78 -3.72 0.31 1.0 1.96 -2.46 0.69 -0.13 - 1.9 -6.81 0.82 -0.27 1.14
-4.78 - -0.19 - 0.65 1.16 -6.09 - - - -1.07 1.65 - 1.99 -8.58 3.59 -5.86 - -4.38 -1.41 -6.09 1.7 - - -3.51 - 1.06 0.25 - - - - 0.44 -6.96 -4.85 2.02 -2.67
-5.18 -2.88 0.56 - 0.99 1.0 - -3.56 -4.57 -5.73 -0.25 1.7 -2.37 1.62 -5.14 3.51 -4.01 - -4.27 -1.75 -3.4 1.52 - -2.08 -3.22 -2.12 0.95 -0.3 - -2.72 -3.25 -2.63 0.32 -4.14 -1.25 1.8 -2.81
Zm00001d034623 (GRMZM2G076114)
-7.3 -6.18 1.45 - 1.27 -6.3 -4.53 -6.66 - - 0.32 0.03 - - -3.06 1.75 -4.32 - -7.16 -0.34 - -3.48 - -3.57 -0.16 -0.28 4.07 1.14 - - -0.57 -3.28 -1.21 - -5.22 -0.18 1.09
-5.34 -4.51 1.8 -2.32 0.04 -3.36 -2.86 -1.88 - -8.3 0.38 0.2 - 1.93 -8.32 1.2 -4.49 -5.94 -1.67 -1.22 0.64 -5.5 -7.45 -6.93 -5.17 0.31 3.41 2.53 - -3.4 -6.97 - 1.04 -7.99 -5.9 -2.72 -0.4
- - - - 0.16 - - - - - - -0.4 - - - 1.81 - - - - - - - - - - - 4.98 - - - - - - - - -
Zm00001d038867 (GRMZM2G093346)
- - - - 1.08 - - -0.87 - - 2.25 1.05 - - -0.88 0.54 - - - - - - - 1.44 1.26 3.5 - 1.24 - - - - 1.4 1.07 -0.92 0.57 -
- -3.93 0.71 - 1.01 - - - -2.23 -2.0 -0.94 -1.21 - 3.36 -3.27 1.61 -2.67 -2.73 0.13 -4.29 1.32 -1.98 - - -0.77 1.65 1.57 1.81 - -1.96 -3.01 - 1.22 - -1.03 -1.65 -1.0
Zm00001d039777 (GRMZM2G334628)
-9.22 -5.97 0.5 - -0.39 1.98 2.11 -2.5 - - -0.11 0.21 - 0.83 -2.41 0.82 1.26 -5.27 1.61 -1.36 -0.01 0.87 -1.86 -7.82 -1.42 0.43 2.15 0.81 - -5.2 - - 0.46 -9.26 -2.92 0.08 0.12
-6.3 -7.13 -0.07 2.42 0.13 -0.99 -4.6 - - -6.86 -1.56 0.2 - - -1.85 1.73 1.53 -4.95 1.81 -5.31 1.77 1.36 0.23 -2.07 -1.07 1.1 1.09 -0.37 - -3.31 -7.62 - -1.05 -8.82 -6.36 0.92 1.08
-6.45 - 0.84 -1.55 0.57 -9.29 -8.63 -3.92 -3.67 -3.46 -2.16 1.54 - 1.64 -4.45 0.65 -5.41 -6.25 -3.56 -3.44 -1.61 - -6.68 -5.89 -0.99 2.11 3.41 2.72 - -4.98 -5.57 - 0.32 -3.29 -3.54 -3.17 0.12
- - - - 0.5 0.3 -1.55 - - - - 0.64 - - -3.43 1.75 - - 1.12 -0.45 1.59 3.02 - - -1.51 2.33 - 0.59 - 1.24 -2.36 - 0.7 - -0.02 -1.08 1.28
Zm00001d043789 (GRMZM2G146913)
-5.0 -1.23 -1.04 -2.21 1.53 -3.88 -4.31 0.99 -8.07 -6.3 -1.4 -2.38 1.19 1.61 -1.79 2.5 0.43 -0.01 0.28 -10.68 -0.53 -0.28 1.57 0.11 1.58 -2.32 -0.29 -0.7 - -0.32 -1.11 - -2.51 -1.05 0.41 -0.17 0.14
Zm00001d044383 (GRMZM2G163574)
- - 0.54 - -0.37 - - - - - - -5.09 - 4.02 - 1.75 - - -0.36 -4.78 - 1.88 - - -2.08 - 0.9 -2.6 - 2.22 1.16 - -3.08 - - 0.35 -3.06
- - -0.66 - 0.48 - - - - - - -0.61 - 2.77 - 1.59 - - -0.22 0.05 1.76 -0.64 - - 0.3 2.3 2.08 2.29 - - -0.79 - 0.53 -5.02 -5.05 -1.72 -0.13
Zm00001d046225 (GRMZM2G145446)
-2.65 -3.98 -0.71 - 2.72 1.71 - - -2.32 - 1.15 0.3 - - -3.28 1.83 0.97 - -1.99 - -2.99 - - - -1.98 - 1.75 - - - - - -2.96 - 1.1 0.91 3.15
Zm00001d046465 (GRMZM2G483624)
- - - - -1.78 - -4.13 - - - - -5.73 - - -5.05 0.59 2.11 0.57 - -3.4 1.84 1.09 1.95 - -2.91 - - 0.76 - 3.97 -3.78 - 0.26 -4.89 -2.56 -0.65 -
Zm00001d046520 (GRMZM5G807957)
- - - 0.84 -0.21 -0.9 -1.95 -2.72 - -3.28 1.65 -0.13 - -2.31 0.22 1.61 0.55 -1.51 -1.36 -2.44 2.68 -0.28 -0.97 1.66 -0.27 -0.28 - -1.9 - 2.97 -0.26 - -1.77 -3.78 -4.26 -0.97 -
Zm00001d047317 (GRMZM5G891276)
- - -0.18 -0.66 1.02 -0.68 -0.16 -0.48 - -4.94 0.89 -0.46 - 0.38 -2.77 1.16 -1.19 -0.78 2.11 -0.75 1.32 -0.64 - 0.32 -2.1 -0.43 1.91 1.06 - 1.35 1.05 - -0.3 0.2 -1.6 -0.58 -2.2
-1.24 - - - 0.27 - - - - - - -0.61 - -0.86 - 1.86 - - 2.32 -1.95 - - - - - - - 3.58 - - -2.13 - - - -4.0 - 3.7
Zm00001d049053 (GRMZM2G545336)
- - 0.89 1.82 -0.87 -0.37 - - - - 0.01 -0.91 - - -1.61 1.64 1.78 - 0.58 -3.82 0.77 - - - - - 3.74 -0.38 - - -0.77 - -1.73 -2.68 - 0.71 0.86
Zm00001d049070 (GRMZM2G370377)
- - 1.0 - 0.54 -3.19 -3.02 -2.2 - - -2.95 -1.21 - 1.76 -3.19 0.92 -2.15 -2.62 -0.17 -0.89 1.08 - - 0.12 -3.45 -2.16 3.44 2.15 - 0.92 1.35 - -0.51 0.23 - -2.33 -5.16
Zm00001d049105 (GRMZM2G025200)
- - 1.49 - 0.58 0.34 - - - - - -0.36 - - -3.41 2.45 3.59 - 0.94 - -0.45 0.99 - -1.21 - 1.15 0.17 0.05 - - - - - - - 0.07 1.34
Zm00001d049622 (GRMZM2G407913)
- - 2.01 - 0.13 - -2.33 - - - 0.73 -2.8 - - -4.63 2.82 -1.6 -1.03 -0.83 3.86 -2.96 - - - - - 1.4 0.36 - - - - -0.18 - -3.69 -2.93 0.77
- - 0.75 - -0.01 -0.29 - - - - -0.3 -0.46 - - -1.57 2.34 3.77 - 2.18 -4.96 -3.93 1.4 - -0.95 -1.65 - 0.43 -1.69 - - - - - - - 0.29 0.96
Zm00001d049756 (GRMZM2G170351)
-1.29 -0.19 -1.81 1.79 2.5 - - -1.75 - - - -0.4 - -0.43 -5.43 2.94 - - -0.28 - 2.81 - - -2.81 -2.1 - 0.16 1.1 - - 0.09 - 1.35 -2.34 -2.06 -0.29 -0.96
Zm00001d049833 (GRMZM2G100328)
-3.74 -0.19 -2.32 - 2.54 -4.11 -3.46 - -1.66 - -0.8 0.87 - 1.8 -3.55 3.08 -0.88 -0.2 1.19 -3.19 - -0.82 -0.5 -1.75 -3.51 - - -1.62 - - -0.83 - 0.12 -0.19 -4.99 2.32 0.85
-6.02 -4.69 -2.78 2.14 -0.92 -1.36 -0.52 -1.03 -3.03 -2.98 0.06 -0.67 -2.84 3.07 -0.24 -0.23 -2.95 -1.41 0.9 0.89 -1.55 - - -3.39 -1.97 -2.14 -1.83 -0.07 1.75 -0.22 -1.35 2.37 -1.57 -1.75 -2.48 -0.54 -0.92
Zm00001d050883 (GRMZM2G437827)
-3.78 - 1.77 2.47 0.89 0.07 - -4.67 - - 0.96 -0.08 - - -2.38 1.68 1.74 -1.47 -0.32 -6.09 -2.26 -2.56 - 0.16 - 1.35 1.87 -2.31 - - - 0.45 -2.06 -2.39 -0.7 -0.06 1.56
- - - - 1.95 - - - - - - -4.0 - - - -4.62 - - - - - - - - - 0.95 - 4.96 - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.