Heatmap: Cluster_225 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - -8.35 1.25 0.17 -0.83 -3.05 -2.12 -0.21 -1.62 -1.55 -1.08 -1.09 -1.85 -3.71 4.32 2.5 - -0.55 -1.19 -0.62 -0.15 -1.28 - -7.29 -5.8 - -3.41 -6.81 - -7.03 -3.67 -5.59 -0.5 -4.14
Zm00001d002675 (GRMZM2G101333)
- - -7.01 - -2.12 - - - - - - -7.3 - - - -1.57 - 2.55 3.04 - - -3.59 - - - - - 0.6 4.32 - - -3.39 -2.88 -0.83 - -8.64 -
Zm00001d005075 (GRMZM2G090531)
- - - - - - - - - - - 0.71 - - -1.4 - - 4.01 3.73 1.84 - - - - - - - - - - - - -0.45 -0.06 - -1.41 -
Zm00001d009458 (GRMZM2G092003)
- - - - -2.2 - - - - - - -1.68 - - - -3.46 - 3.43 3.58 2.95 - - - - - - - - - - 2.43 - -0.71 - - - -
Zm00001d010302 (GRMZM2G167014)
- - - - -3.99 - - - - - - - - - - -5.26 - 3.06 3.14 -0.36 - - - - - - - -2.8 4.23 - - - -4.41 - - -4.9 -
Zm00001d011270 (GRMZM2G021289)
- - -9.07 - -10.05 - - - - - - - - - -12.39 -5.25 - 4.33 4.07 -9.85 - - - - - - - -8.89 - - - - -7.06 -8.06 - -10.51 -
Zm00001d013299 (GRMZM2G350844)
- - - - -2.55 - - - - - - - - - -4.11 -4.86 - 4.08 4.21 -0.94 - - - - - - - - - - - - -3.27 -3.26 - -3.81 -0.89
Zm00001d013337 (GRMZM2G064089)
- - -1.43 - -0.63 - - - - - - -5.87 - - - -3.39 - 3.61 4.06 -0.32 - - - - - - - 0.99 - - - - 1.93 -1.47 - - -
Zm00001d014315 (GRMZM2G094632)
-7.21 -7.64 -5.76 -6.23 -5.2 -5.31 -5.02 -5.2 -1.38 -0.97 -4.93 -3.66 -5.83 -3.75 -2.57 -3.97 -4.29 4.35 3.81 -11.32 -4.75 -5.65 -5.75 -4.8 -4.39 -6.66 -5.42 -5.35 -4.9 -3.41 -6.22 - -6.33 -5.71 -2.74 -1.46 -3.94
Zm00001d015592 (GRMZM2G401463)
- - - - -2.13 -3.75 -5.33 - - - -3.96 -2.48 - -5.46 -2.89 -3.42 - 4.38 3.85 -8.77 -8.0 - -4.93 - -2.39 - - -5.15 - - - -3.15 -6.07 -5.49 -5.63 -3.65 -1.32
Zm00001d016973 (GRMZM2G459166)
-2.09 -1.91 -2.06 -1.92 -1.39 -1.29 -2.08 -0.11 -2.04 -1.91 -1.31 -1.06 -0.71 0.65 -0.89 0.37 0.31 2.78 1.92 -0.85 0.47 0.4 0.12 0.45 -0.01 0.84 -2.54 -2.02 1.83 -0.28 -0.52 -0.38 -2.67 -1.37 -0.77 -1.14 -1.35
Zm00001d019551 (GRMZM2G026389)
- - - - -1.36 - - - - - - -3.41 - - 0.11 -2.81 - 3.93 3.83 1.44 - - - - - - - - - - 1.49 - - - - -1.54 -
Zm00001d019628 (GRMZM2G036063)
-7.25 - -5.45 - -6.52 -5.91 - - -6.07 -5.25 -3.7 -2.97 - -4.85 -3.25 -5.98 - 4.3 3.88 -7.29 - - - -7.68 -0.05 - -3.4 -3.64 - - -2.27 -2.54 -1.82 -2.92 -6.54 -2.74 -5.14
Zm00001d021887 (GRMZM2G006324)
- - - - -1.7 - - - - - - -0.88 - - 0.61 -1.52 - 4.16 3.36 -1.26 - 1.1 - 0.23 0.28 - - -0.38 - - - - - - -1.77 -3.62 -
Zm00001d024337 (GRMZM2G070575)
- - - - - - - - - - - -8.12 - - - -4.92 - 4.54 3.73 -3.59 -4.46 - - - - - - -6.13 - - -2.48 - -7.34 -4.66 -4.88 - -
Zm00001d025978 (GRMZM2G026335)
- - - - - - - - - - - -8.52 - - - -5.13 - 4.48 3.75 0.27 - - - - - - - - - - - - - - - - -
Zm00001d026512 (GRMZM2G067424)
-6.74 - -5.65 -2.67 -1.46 -6.11 -5.46 - - - - -1.91 - - -3.99 -2.48 -3.37 3.67 4.06 -2.05 -4.28 - -0.38 - -5.35 -1.89 -1.1 -3.06 0.95 -1.22 -0.53 - -2.14 -4.49 -4.65 -1.47 -0.33
- - - - - - - - - - - -0.37 - - - -3.94 - 3.37 3.65 - - - - 3.73 - - - - - - - - - - - - -
- - -5.94 - -2.6 -7.98 -4.8 - -5.53 - - -4.27 -3.64 -2.87 -3.79 -2.33 - 2.62 2.27 -0.39 -5.1 - - - -1.99 - -0.03 2.23 - 2.41 -2.74 2.54 2.18 1.35 -5.06 -3.65 -4.92
Zm00001d033126 (GRMZM2G007327)
- - - - -0.54 - - - - - - -0.6 - - - -2.86 - 3.15 1.67 1.81 -0.78 - 4.24 - -1.42 - - - - - - - - - - -3.98 -
Zm00001d036773 (GRMZM2G322892)
- - -3.49 -6.86 -4.99 -7.65 - - -8.1 -6.55 -8.0 -8.12 -6.92 -1.34 -9.45 -4.11 - 4.05 2.93 - -1.71 - -1.52 - -8.59 -8.35 - -9.06 - 3.37 0.14 - -3.83 -10.63 -5.76 -7.13 -6.17
Zm00001d037701 (GRMZM2G022996)
1.74 -1.44 -4.55 - -1.13 - -3.52 -7.85 -5.78 -6.55 -6.14 -5.56 -2.93 -6.77 -1.33 -2.52 - 3.87 3.86 -4.87 -6.32 - -6.25 - -2.63 -2.08 -1.63 -2.68 -0.79 - -5.53 -1.24 -7.97 -0.84 -2.93 -3.97 -8.18
- - - - -13.14 - - -9.16 - -9.86 - -11.43 - - -12.62 -5.64 - 4.36 4.02 -7.24 -6.25 - - - -11.38 - -2.75 -7.36 - -6.76 -8.95 - -5.37 -10.62 - -12.83 -
Zm00001d038411 (GRMZM2G389089)
- - -0.15 - -1.37 - - - - - - -4.51 - - - -2.27 - 3.98 4.11 -1.24 - - - - - - - -5.18 - - - 0.78 - - -2.32 -4.42 -
Zm00001d039927 (GRMZM2G013884)
-5.5 - - - -3.9 - - - -4.36 - - -5.6 -3.48 - -4.6 -6.11 -2.38 3.84 3.62 - -6.07 - - -6.02 -5.45 - - - 3.28 - - - -5.73 -6.16 - -5.29 -6.14
Zm00001d039928 (GRMZM2G494186)
-5.34 -4.22 -4.73 0.28 1.84 -4.68 -2.27 - -2.2 -1.55 -1.62 -2.25 - - 0.35 -3.12 - 3.99 3.28 -5.84 -2.69 - -2.1 -2.56 - - -0.7 -3.73 - - -1.39 - -0.72 -1.58 -6.49 -1.6 -0.39
Zm00001d040108 (GRMZM2G103214)
- - - - -4.94 -2.07 -6.39 -1.65 - - -4.45 -5.51 - -0.53 -9.67 -4.95 -5.61 4.16 4.1 -9.63 -8.24 - - - - - - -7.07 -1.66 - -7.09 -3.34 -7.88 -8.34 -7.24 -5.6 -3.7
Zm00001d040820 (GRMZM2G031429)
-7.79 - - - -10.09 -8.32 - - -7.23 - - -9.19 - -7.42 - -5.99 - 4.48 3.87 -10.74 -9.96 -6.72 - -8.89 - - - -6.72 - - - - -8.39 -7.26 - - -7.63
Zm00001d043311 (GRMZM2G025758)
- - -5.19 -3.24 -7.76 - - -6.82 -3.83 -6.38 - -6.64 - -1.1 -5.1 -1.64 - 4.4 3.5 -0.91 0.54 -1.71 - -1.82 -2.56 - - -2.0 - -1.69 -5.49 - -7.92 -3.6 -2.92 -5.49 -
Zm00001d044039 (GRMZM2G349407)
- - - - -3.77 -5.46 - - - -7.11 - -3.72 - -6.29 -4.05 -2.25 - 4.34 3.94 -5.47 -6.25 -3.64 - -7.62 -4.22 - - -3.42 - - -3.88 - -1.76 -4.84 -2.98 -5.23 -3.55
Zm00001d044375 (GRMZM5G803590)
-10.14 - - - -12.32 - - - - - - - - - - -5.99 - 4.64 3.59 - - - - - - - - -10.24 - - - - - - - - -
Zm00001d044376 (GRMZM5G866024)
-7.21 -10.7 -11.09 -1.8 -5.9 -5.46 -6.95 - - - -5.51 -6.43 -2.84 - -7.04 -2.87 - 4.33 4.0 - -12.24 -4.51 -2.87 - -11.54 - -8.64 -6.32 - - - - -7.66 -9.69 -9.56 -6.1 -6.43
Zm00001d044378 (GRMZM2G055629)
- - - - -5.57 -9.64 - -6.65 - - - -6.44 - - -8.87 -4.71 -9.0 4.41 3.91 -9.04 -5.15 -4.7 -3.42 -7.93 -7.88 - - -5.05 -3.38 -3.17 -2.73 - -8.84 -6.17 -8.12 -9.13 -9.25
Zm00001d044775 (GRMZM2G110299)
-5.32 - - 0.58 -0.48 -5.0 - - - - - -1.76 - - 2.44 -7.08 - 3.47 3.1 -8.69 - - - - - - 1.41 -1.64 -0.69 - - - 1.6 -0.78 -1.46 0.69 -2.84
Zm00001d046158 (GRMZM2G025026)
-11.18 - -10.37 -7.57 -7.25 -11.46 -11.4 -9.09 -11.36 -10.05 -11.2 -10.41 -7.22 -3.81 -9.06 -5.7 -7.06 4.56 3.73 - -8.25 -10.52 -8.74 -7.28 -5.32 -8.43 - -6.92 -4.88 - -11.38 -7.19 -11.65 -7.34 -7.76 -8.92 -10.34
Zm00001d046175 (GRMZM2G395458)
- - - - -5.51 - - - - - - -1.18 - - -1.21 -3.78 - 4.43 3.55 -0.32 - - - - - - - - - - -0.49 - - - -3.96 -0.64 -0.92
Zm00001d046627 (GRMZM2G141256)
-3.14 -3.2 -3.83 - -4.93 - - - - - - -8.22 - - -8.98 -5.98 - 4.62 3.6 -10.02 - - - - -9.53 - -6.1 - - - - - - - -8.34 -8.62 -6.99
Zm00001d046933 (GRMZM2G357825)
- - - - -4.98 0.82 - - - - - -1.97 - - -0.48 -0.79 - 3.86 3.74 2.52 - - - - - - - - - - - - - - - - -
Zm00001d048106 (GRMZM2G113653)
-6.61 -6.44 - - -7.02 - - -4.6 - - - -7.19 - - -7.11 -5.48 - 4.54 3.76 - -6.16 - - -5.56 -4.04 - - -5.98 - - - - - -5.81 - -6.44 -
- - - - - 2.74 - - - - - - - - -0.15 -5.17 1.36 2.96 3.91 - - - - - 0.64 - - 1.07 - - - - - - - -1.31 -
Zm00001d048152 (GRMZM2G048375)
- - 0.07 1.46 1.53 -3.91 -3.05 -2.03 -4.19 - - -4.02 -2.31 -3.52 -4.45 -0.15 -3.73 3.93 2.98 -4.75 -0.99 - - -1.99 -1.94 - 0.21 -0.45 - 0.02 -0.85 - -4.71 -1.44 -8.42 -1.52 -4.05
Zm00001d049614 (GRMZM2G074087)
-2.71 -0.84 -0.96 -1.95 -0.98 -1.39 -2.18 -1.82 -1.5 -1.11 -1.5 -1.73 -1.15 0.27 -2.04 0.02 -0.33 3.79 2.73 -2.78 -0.28 -0.98 -1.64 -0.26 -0.79 -1.43 -1.5 -1.01 -1.08 -0.05 -1.56 -0.79 -2.03 -0.69 -2.13 -1.64 -2.03
Zm00001d050552 (GRMZM2G027673)
-6.61 -6.83 - -4.06 -7.99 - - -7.12 - - - -8.77 -3.58 -5.71 -7.85 -4.71 -4.81 3.76 3.55 3.34 -2.97 -3.31 - -6.19 -2.9 -5.89 -0.88 -5.44 - - -2.69 -4.01 -6.04 -4.44 -6.08 -6.76 -9.41
Zm00001d050873 (GRMZM2G106741)
- - - - -5.84 -3.31 - - - - - -3.28 - - -3.38 -2.58 -1.39 3.7 3.0 -0.5 -2.34 - - - -3.48 - -3.2 -2.04 - 0.41 -3.09 3.55 -2.24 -1.96 - -2.35 -
Zm00001d053663 (GRMZM2G029566)
-2.53 -0.72 0.58 -0.46 -0.53 0.23 -0.25 -0.71 -0.26 -0.22 -1.4 -0.26 -1.18 -0.87 -0.59 -0.66 0.48 2.08 1.47 0.71 -0.68 -0.39 -0.78 -0.25 0.01 1.35 0.24 -0.69 -1.88 0.3 0.62 -4.0 -1.47 -0.21 0.05 0.26 -0.49

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.