Heatmap: Cluster_135 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
- -4.72 - - - - - -0.46 0.26 -0.14 - -3.96 - - - - - - -0.63 -2.27 0.93 -0.45 -0.17 -2.73 -1.49 -0.96 -3.18 -0.76 -1.42 -1.74 -2.0 -2.59 -4.2 -1.83 -2.66 -1.77 -1.75 -2.07 -3.06 -0.43 -1.48 -3.14 3.98 2.87 3.13 0.86 0.55 0.25 0.23 -0.27 -1.65 -0.2 -0.47 0.07 0.92 -3.55
0.94 -1.8 - - - - - 0.11 -1.25 -0.14 - -4.74 -0.84 -0.88 - - - - -0.87 - 1.84 1.43 2.46 - - -0.43 - - - - - -3.43 - - - - -3.78 -3.62 - -3.65 - - 2.75 3.96 2.91 2.35 -1.24 -3.48 -2.05 -2.89 -2.1 -1.28 -2.64 - -2.56 -4.89
-0.46 -3.16 - -2.84 - - - -1.6 - -4.93 - - - -4.41 - - - - -5.23 - -0.63 2.81 0.63 - - -0.03 - - - - - - - - - - - - - - - - 3.65 4.38 2.62 1.0 -0.87 -0.49 0.46 - - - - - - -2.52
- - - - - - - -6.24 -6.3 -5.2 - - - -6.74 - - - - -4.64 - -3.23 - 0.76 - - - - - - - - - - - -6.47 - - - - - - - 2.52 4.14 4.81 1.42 - -7.54 - - - - - - - -
- - - - - - - - -7.32 - - - - - - - - - -7.94 - - - - - - - - - - - - - - - - - - - - - - - 4.56 4.53 3.2 - -3.82 -7.5 -6.35 - - - - - - -
- -3.52 - - - - - -2.67 -3.05 -2.69 - - -5.1 -5.86 - - - - -4.04 - -0.22 1.45 -0.73 - - 1.08 - - - - -0.74 -1.67 -0.4 0.64 0.85 -0.34 -0.59 -3.09 -0.49 -0.54 -0.41 -0.12 3.8 3.89 1.33 -0.64 2.49 -2.01 0.41 -4.61 -3.78 -5.34 - - -4.27 -4.09
- - - - - - - - - 1.25 -2.24 -0.3 - -0.98 -2.27 - - - 0.56 - - - - - - -4.19 - - - - 0.88 1.2 0.24 0.49 1.14 1.38 -0.28 0.74 1.28 -0.24 1.65 -0.77 3.52 3.12 2.99 - - -1.31 -1.32 - - - - - - -1.32
-0.79 -0.62 -5.52 0.0 -7.11 -5.85 - 0.45 -3.0 -2.24 - -7.08 - - - - - - -2.16 0.41 0.85 0.96 -0.12 -2.5 -0.54 -0.63 -0.05 0.37 -0.04 -0.03 0.15 -0.12 -0.09 0.07 -0.2 -0.13 -0.71 -0.33 -1.13 -0.69 -0.02 -0.33 3.03 2.95 1.88 1.41 1.34 -2.07 -1.52 -1.25 -0.9 -0.18 -0.98 -1.48 -0.51 0.33
2.02 - -2.57 -0.17 -0.88 0.96 1.99 -3.49 1.25 - -0.71 -3.4 -1.83 -0.2 -2.82 -1.89 - - -4.86 - 0.74 -3.6 0.74 - - -5.84 - - - - - - - - - - - - - - - - 3.61 4.15 2.06 0.79 -1.5 - - - - - - - - -
-2.28 -3.21 0.22 0.45 0.14 -0.45 -2.43 1.37 -2.37 -0.27 - -2.89 -1.3 - -2.41 -2.31 - -2.01 -1.33 - 0.04 -6.02 -1.2 - - -3.08 - - - - - - - -5.7 - - - - - - - - 3.7 4.19 3.57 -1.48 -3.33 -4.82 -3.79 - -2.95 -1.57 -4.24 - -2.79 -4.84
- - - -2.71 -2.56 - 2.07 - -6.09 -2.31 - -1.55 -1.47 -2.27 -1.96 - - - -3.69 - - - - - - -5.33 - - - - - - - - - - - - - - - - 4.52 3.93 3.12 - - -5.38 - - - - - -3.05 -2.72 1.47
- - - - - - - - -2.19 - - 1.52 0.46 0.84 - - - - 1.06 - - - - - - -3.65 - 1.22 - - - - - - - - - - - - - - 3.02 2.81 4.85 0.26 - - - - - - - - - -
1.22 - - -1.4 - - - 0.46 -0.95 -1.31 - - -2.32 - -3.71 - - - -1.29 - 2.05 1.75 2.09 - - -0.45 - - - - -4.4 -2.45 -2.53 -2.14 - -3.3 - - - - -3.11 - 3.35 3.37 2.76 1.7 1.99 -1.18 0.88 -3.65 - - -3.62 - - -4.92
-0.39 -1.78 -1.66 -0.88 -1.47 -2.25 -1.39 -0.02 -0.24 -0.96 -2.06 -3.75 -2.04 -3.51 -3.33 -2.41 - -1.82 -0.22 -0.22 0.66 -0.24 0.35 -0.95 -0.4 -1.39 0.12 -0.31 -0.71 -0.4 -0.3 -1.3 -1.54 -0.57 -1.12 -1.07 -1.11 -0.74 -0.62 -1.0 -0.27 -1.67 3.16 2.01 2.82 0.67 0.16 -0.19 -0.02 0.05 -0.02 0.25 0.29 -0.13 1.23 -1.33
- - - - - - - - -3.04 - - -1.17 -3.0 -3.47 - - - - -2.51 - - - - - - -4.52 - - - - - - - - - - - - - - - -3.03 4.42 4.28 3.7 - - -4.26 -5.46 - - - - - - -0.08
0.51 - 2.94 - - - - - -0.39 - - - - - - - - - -0.86 - - - 2.6 - - -0.28 - - 0.35 - -0.36 - - - - - - - - - 0.55 - 4.21 3.12 2.86 -0.47 - - - - - - - - - -
- - -1.14 -1.13 - - - -2.26 -1.57 - - - - - - -2.46 - - -0.19 -8.81 - - - - - -1.73 - - - - -1.0 -0.26 - -2.88 -1.47 - - -3.41 - -1.54 -0.94 -1.27 3.52 3.44 3.08 -0.8 - -3.47 -0.36 1.29 1.98 1.62 1.16 1.65 1.54 -
-2.56 -2.71 -5.04 -1.57 -3.34 - -5.06 -1.68 -1.17 -2.51 -0.57 -1.69 -1.93 -0.94 -2.98 - - - -1.21 -1.85 -1.18 -3.74 -1.14 -2.68 -2.12 -2.41 -2.47 -2.75 -2.68 -3.35 -1.76 -2.77 -0.92 -2.45 -2.66 -2.35 -2.67 -2.05 -2.11 -2.1 -1.68 -2.19 3.1 2.97 3.42 -0.97 - -1.98 -1.24 1.35 1.45 1.59 1.52 1.63 1.84 -1.09
1.14 2.51 - - -4.55 - - -1.51 -2.0 -4.7 -3.22 -2.94 -3.07 -1.92 -3.94 - - - -5.68 -3.36 -3.42 0.59 - - - -4.62 - -1.51 -2.38 - -5.42 -2.88 - - - - - - - -2.28 -3.83 - 3.51 3.77 3.98 1.13 -5.85 -2.13 -1.15 - -4.63 -4.74 - - -2.07 -5.27
- - - - -3.38 - - 0.97 - -2.72 - 0.04 -0.93 -3.26 0.23 -0.44 - - -1.58 - -1.71 - -0.13 - - - - - - - - - - - - - - - - - -1.2 - 4.2 3.7 2.89 2.0 - 0.34 0.14 - -2.88 -2.83 -1.29 -1.26 -2.63 0.85
-0.3 - - -3.26 - - - 1.29 -4.15 0.04 - - -2.56 -3.34 - - - - 0.35 -3.03 -0.19 -2.81 - - -1.91 -2.17 - -1.91 - -1.95 -1.41 -2.82 -0.36 -1.52 -0.53 - -2.82 - -1.97 -2.97 -1.44 - 3.23 3.15 3.93 -1.66 -0.12 -1.02 -0.31 - 0.95 1.11 - -1.42 2.0 -2.43
-1.22 -0.33 - - -1.64 - - -0.08 -2.44 -0.41 - - -1.89 - -1.39 - - - -1.46 - -0.13 0.33 0.46 - - 0.77 - - -1.38 -0.28 - - - - - - - - - - - - 3.94 2.41 4.05 1.53 0.54 -1.96 -0.22 -2.33 - -1.16 - -2.45 0.32 -1.37
-0.55 -3.04 - -3.16 -2.75 - - -1.27 -1.67 -2.84 - - - - - - - -3.39 -2.06 -2.19 -2.96 -2.91 -0.51 - - -1.53 - -1.51 - - -1.61 - -1.78 -2.76 -2.42 -5.23 -0.87 -0.89 - -0.83 -1.45 -0.58 3.41 3.02 3.53 -0.99 -1.26 -1.92 -1.55 1.59 1.26 1.29 1.46 1.41 1.54 -2.6
- -5.36 -5.15 -7.14 - - - -6.16 -2.93 -1.31 - -4.97 -4.95 -4.69 -5.39 - - - -3.35 - -3.57 -6.21 -5.16 - - -6.01 - - - - - - - -6.16 -5.96 - - -5.47 -5.42 - - -6.27 4.43 4.46 3.25 -3.3 - -0.26 -0.46 - -6.21 -4.66 -5.33 - -3.78 -5.38
0.31 -1.97 -3.75 -0.92 -3.62 -5.67 - 0.26 0.02 -1.16 -1.9 -2.77 -1.34 -1.61 -2.54 - - -1.77 -0.92 0.29 0.24 -0.45 0.88 -0.33 -0.65 -0.56 -0.16 -0.75 -0.01 -0.96 -0.85 -2.24 -2.19 -1.2 -1.44 -1.7 -1.89 -1.23 -0.93 -1.29 -0.74 -1.79 3.51 2.19 2.14 0.57 -0.25 -0.8 -0.55 0.36 0.4 0.66 0.6 0.51 1.49 -1.0
-0.66 - - -0.45 -1.4 - - - -0.72 -3.09 - - -0.51 -2.07 - - - - -0.97 - -0.57 - 0.96 -0.68 - -1.17 - - - - - - - - -1.36 - - - - 0.26 -0.23 - 3.64 3.09 3.03 - - -2.03 -3.27 1.49 0.12 1.54 1.9 1.94 0.9 -2.14
- - - - - - - - - - - - - - - - - - - - - - -1.59 - - - - - - - - - - - - - - - - - - - 3.8 5.07 3.03 -4.99 - - - - - - - - - -
-1.2 -5.24 - - - - - -7.04 -2.61 - - - - - - - - - - - 2.36 -2.84 0.76 - -7.2 -3.12 - - - - - - - - - -6.84 - - -6.5 - - - 4.31 3.82 3.08 2.16 -0.14 -3.72 -0.94 - - - - - - -
-2.65 -0.76 - - - -0.75 - -2.56 -6.88 -4.15 - -2.39 -1.07 - -2.2 - - - -3.59 - -0.96 -2.56 -1.55 - - -1.64 - - - - - - - - - - - - - - - - 4.5 4.4 2.51 0.27 -1.46 -1.58 -0.94 - - - - - - -1.61
-2.93 -0.04 - - - - - -3.22 -5.91 -6.51 - -1.84 -0.27 - -3.5 - - - - - -0.83 -3.26 -1.83 - - -1.66 - - - - - - - - - - - - - - - - 4.49 4.53 2.26 0.09 -2.74 -2.24 -1.92 - - - - - - -2.06
3.25 - - - - - - - -3.82 -4.23 - - - - - - - - -3.16 - - -3.65 -1.05 - - -1.39 - - - - -4.89 - - - - - - - - - - - 1.88 4.87 3.12 1.17 0.26 - -2.51 -3.84 - -3.67 - - - -
3.42 -2.73 - - - - - - -3.87 -5.13 - - - - - - - - - -3.58 -2.52 -1.97 -1.53 - - -1.37 - - - - - - - - - - - - - - - -3.5 2.35 4.94 2.27 -0.29 0.88 -5.78 -2.03 - -3.69 - -3.7 - - -
0.26 -1.33 - -1.7 - - - 0.06 -1.26 1.02 - -2.27 0.63 - -2.35 -1.76 - - 1.15 -1.85 0.55 0.17 0.8 -1.25 -1.04 -0.07 - -0.76 0.3 -0.28 -1.33 -0.95 -1.42 -1.07 -2.33 -1.54 -0.48 -1.61 -0.58 -1.87 -0.41 -2.75 1.8 1.8 2.7 0.81 0.22 -0.31 -0.26 0.47 1.46 1.27 0.83 0.48 1.06 0.98
-3.95 -2.57 - -1.83 -2.26 -3.65 - -1.77 -0.19 -3.49 -0.65 -1.69 -2.12 -1.92 -2.76 - - - -1.42 -2.79 -2.42 - -1.54 -3.72 -3.03 -3.3 - -2.17 -3.43 -4.41 -2.79 -3.68 -2.83 -3.61 -3.71 -2.8 -4.59 -2.65 -3.2 -3.52 -2.38 -2.81 3.63 3.43 3.88 -2.11 -2.77 -2.39 -1.57 0.58 0.62 1.05 0.87 0.36 0.97 -2.16
1.09 -3.72 - - -3.59 - - -0.01 -1.95 -1.89 - - - - - - - - -1.5 -1.14 0.19 -0.74 0.07 -2.05 -1.1 -1.44 - -1.63 -0.95 - -1.84 -3.02 -3.52 -2.68 -2.16 -4.67 -3.09 -1.88 -1.43 -2.05 -1.37 -1.9 4.25 3.02 2.82 0.36 -0.1 -0.28 -0.16 -0.68 -0.75 -0.17 0.04 -0.26 0.99 -3.45
-1.63 1.99 -5.5 -3.12 -3.28 -1.72 -3.6 -1.0 -2.2 -4.69 - -2.53 -1.01 -6.99 -3.71 -2.75 - -2.4 -3.92 -2.73 0.25 -1.35 1.38 0.14 -2.8 0.23 -2.52 -4.78 -3.38 -3.9 -1.35 -1.63 -0.89 -1.28 -2.13 -1.68 -2.02 -1.26 -2.75 -1.93 -2.05 -2.06 3.41 3.09 3.26 2.43 0.26 -1.89 -1.59 -3.09 -4.52 -2.37 -3.35 -3.55 -2.43 0.71
- - - -7.39 - - - - - - -7.35 - -8.59 - - - - - -10.49 - -5.23 - - - - -10.9 - - - - - - - - - - - - - - - - 5.07 4.46 -1.68 -5.42 - - - - - - - - - -
-2.58 -2.69 - -0.22 - - - -3.39 -1.04 1.14 - -0.72 0.69 -4.03 -2.13 -2.8 - - 0.05 0.34 -1.49 -1.93 - - -2.66 -0.08 1.21 -0.02 -1.15 -1.64 -0.35 -1.56 0.16 -1.79 -2.02 -0.27 -1.1 -1.8 -1.53 -0.1 -0.04 -2.32 4.25 2.86 2.03 -0.66 - -1.29 -0.85 -3.9 -2.65 -2.61 -3.51 - -1.83 0.79
-0.37 - -1.08 0.17 -2.14 -1.66 -2.25 1.78 -2.11 -1.45 -1.29 0.13 -0.45 0.05 0.55 -2.72 - -7.58 -1.67 -6.94 1.13 -4.99 -1.06 - - -6.44 -7.41 - - - - -8.44 - - -8.64 - -8.43 -8.76 -7.43 -8.11 -7.45 -8.38 3.94 3.96 3.26 -2.2 -3.62 -7.38 -5.8 - - - - - - -6.23
1.63 -1.32 -2.1 -3.06 -4.44 - - 1.61 -2.8 -1.16 -4.52 - - -4.64 -5.67 - - -5.62 -0.6 -4.03 1.19 -0.57 0.42 -3.56 -4.61 -1.76 -2.45 -3.23 -2.69 -3.59 -2.83 -3.17 -2.15 -2.46 -3.67 -2.93 -2.69 -2.37 -2.52 -2.09 -1.69 -2.56 4.35 3.95 1.3 0.08 -0.4 -3.17 -3.69 - - - - - - -
2.25 -0.73 - -1.76 -6.25 - -3.2 2.44 -1.93 -0.84 - - - - - - - - -1.31 -2.8 1.63 -0.29 1.7 -2.31 -1.95 -0.91 -4.78 -3.31 -2.44 -3.93 -2.23 -2.05 -2.13 -2.32 -2.06 -2.19 -2.57 -1.84 -2.15 -1.93 -1.37 -1.37 3.95 3.55 0.73 0.66 0.4 -4.96 -5.03 - - - - - - -
0.54 -1.03 -2.13 -0.21 -2.02 -2.83 -3.44 0.36 0.51 -1.3 -2.09 -3.97 -1.53 -1.36 -2.88 -1.95 - -0.99 -0.89 -0.05 0.57 -0.18 0.65 -1.43 -0.42 -0.63 0.13 -0.65 -0.44 -0.73 -0.78 -1.37 -1.83 -1.22 -1.7 -1.78 -1.71 -0.99 -0.98 -1.62 -0.38 -2.99 3.3 2.18 2.61 0.84 0.04 -0.43 -0.24 -0.21 0.08 0.18 0.27 -0.12 0.98 -1.6
1.26 - - - - - - - - - - - - - - - - - - - - - 1.96 - - -0.81 - - - - - - - - - - - - - - - - 0.22 -0.27 5.2 3.07 -0.57 -3.48 0.4 - - - - - - -
- - - 1.07 0.8 - - 2.96 - -0.29 - - - - 1.31 - - - - - - 1.51 - - - -1.69 - - - - - - - - - - - - - - - - 3.7 2.25 4.06 1.69 - - -1.95 - - - - - - -
-1.5 -2.08 - -2.27 -3.42 - - -0.83 -1.12 -3.67 - - - -3.68 - - - - -1.03 -4.12 -1.81 -4.93 -0.71 - - -2.29 - - - - -2.0 -2.99 -1.4 -4.76 -2.45 -2.47 -4.26 -1.86 -3.11 -1.86 -1.82 -2.89 3.43 3.29 3.99 -0.5 -3.79 -2.15 -1.45 0.86 0.72 1.18 0.72 0.97 1.34 -2.04
- - - - - - - - - - - - - - - - - - -5.06 - -0.2 - 1.12 - - -5.35 - - - - - - - - - - - - - - - - 4.25 3.94 3.61 2.55 -1.11 - - - - - - - - -
4.18 - 0.64 0.05 -2.04 - - 0.24 - - - 0.82 2.38 - -0.03 0.32 - - - - - -0.39 - - - -5.87 - - - - - - - - - - - - - - - - - 3.21 3.23 -0.24 -0.29 -1.62 1.54 - - - -1.54 - - -
1.63 -0.06 - - - - - - -0.5 - - - - - - - - - - - 0.15 0.69 2.14 - - -0.27 0.14 - - -0.01 - - - - - - - - - - - - 3.14 4.14 2.88 1.23 0.23 -3.51 -2.05 -1.06 -0.9 -0.83 -1.03 -1.05 - -0.16
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.09 3.39 5.21 - - - - - - - - - - -
2.04 - - - - - - -3.78 - - - - - - - - - - - - 0.04 -1.2 2.79 - - -4.14 - - - - - - - - - - - - - - - - 0.76 -0.12 4.78 3.7 - -4.29 -3.65 - -3.69 - - - - -
0.37 -3.74 0.8 0.5 -0.15 -0.06 0.84 -0.11 -4.43 -2.81 - -4.36 0.53 0.56 - 1.94 - 0.2 -2.36 -1.94 0.79 -1.57 1.17 - -1.38 -1.99 -2.54 -0.33 -1.46 -0.37 -3.68 -2.54 -2.58 -1.54 -3.07 -2.07 -2.33 -2.45 -1.23 -2.43 -2.25 -1.89 3.02 3.0 2.9 1.75 -0.45 -2.83 -3.32 -4.61 -3.52 -1.99 -4.85 -3.69 -2.49 -4.07
-0.91 - -1.8 -0.99 - - - -1.17 - - - - -1.59 - - - - - -2.63 - 0.19 -2.83 -1.82 - - 1.19 - - - - - - - - - -0.65 - -0.65 -3.08 - - -2.93 4.46 3.74 2.9 0.86 0.27 -1.64 0.55 - - - - - - -0.53
-0.05 -0.54 - -2.76 -2.52 - - 0.44 -0.21 0.49 -1.77 -3.92 -0.39 - -2.43 -0.72 - -1.37 0.55 -1.23 0.43 0.05 -0.75 -1.31 -1.13 0.09 -0.86 -0.25 -0.9 -0.0 -1.19 -1.51 -0.64 -1.52 -1.63 -0.63 -0.6 -1.2 -1.13 -1.16 -1.17 -1.61 2.37 1.86 2.86 0.36 -0.76 -0.39 0.26 0.43 1.1 1.21 0.69 0.64 1.25 0.69
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.