Heatmap: Cluster_85 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d003069 (GRMZM2G049608)
- - - - -0.74 3.65 - - 1.14 - - 0.06 - - -1.25 -1.43 - - 1.17 2.99 - - - - - - - -0.88 - - - - - -0.63 1.55 2.46 -
Zm00001d003117 (GRMZM2G086486)
- - - - - - - - - - - 2.41 - - - -0.55 - - - - - - - - - - - 3.48 - - 3.09 - - - 1.41 3.11 -
Zm00001d003859 (GRMZM2G395267)
- - - 5.18 -0.98 - - - - - - -6.67 - - - -11.58 - - -8.28 -7.71 - - - - - - -4.35 - - - - - - - - -6.64 -3.17
Zm00001d004527 (GRMZM2G376708)
3.22 - 1.7 - 2.44 0.92 - - - - - 1.45 - - -0.36 -2.06 - - -0.71 - - - - - -0.31 - - - - - 0.91 - -0.64 0.81 - 2.95 -
- - -2.02 4.73 -0.38 - - -1.54 - -2.95 -0.9 -1.17 - -2.43 -5.3 -0.34 - - - -4.21 0.06 - - -2.51 -1.41 - -2.39 0.08 - - -1.29 - -2.83 -4.79 -1.76 -4.57 1.63
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21 -
- - - - - - - - - - - - - - - 0.49 4.9 - - - - - - - - - - - - - - - - - - 2.52 -
Zm00001d007049 (GRMZM2G077479)
- - - -1.46 -1.21 -5.91 -4.31 - - - - -6.06 - - -3.05 -1.85 -0.23 - -8.53 -4.54 -5.44 - - -6.11 -0.97 - 4.46 -4.26 - - - - -5.81 - -2.7 3.53 -1.04
Zm00001d007363 (GRMZM2G015933)
-2.07 -4.29 -3.97 -0.87 1.99 -0.55 -4.63 -6.21 -6.94 - -0.53 -0.71 - -4.95 -4.38 -0.95 - -3.25 -6.23 -9.45 -7.85 - 3.73 -8.4 1.35 -6.94 -1.72 1.58 - - -4.83 - -4.47 0.03 0.95 2.6 0.23
Zm00001d009320 (GRMZM2G047476)
-5.29 - - - 0.85 2.79 -3.29 - - - -0.87 -0.46 - - -4.59 -0.27 2.12 - 0.09 - - - - -3.05 -4.68 2.24 - - 0.48 - - - -6.93 -5.28 -0.26 3.17 2.16
- - - 4.77 -2.65 -0.28 - 1.07 - - -0.23 -1.57 - - -3.81 -0.16 -2.66 - 1.15 -3.62 -0.38 - - - - - - -2.05 - - - - -3.77 - - -4.92 -0.05
- - - - 2.08 1.9 - - - - - 0.7 - - - -0.31 - - 2.61 2.32 - - - - - - - - - - - - - - - 3.96 -
- - - - 3.0 0.56 - - - - - -2.5 - - -3.47 -5.26 - - - 0.67 - - 2.14 - - - 2.48 1.18 - - - - - - -2.24 2.78 2.66
Zm00001d011996 (GRMZM2G064933)
- - -2.18 5.03 -5.27 - - - - - - -6.65 - - - -4.41 -1.97 -1.69 -3.04 - - -0.32 - -1.55 - -0.37 - - - - -2.48 - - - -2.57 -5.19 0.12
Zm00001d013618 (GRMZM2G454719)
- - -1.83 - -0.99 1.79 2.17 -1.19 - - -0.73 -1.65 - - -5.45 -0.45 1.5 -1.74 -0.16 -3.1 - 2.09 0.56 -2.83 -0.17 0.67 - -0.82 - - - - -3.19 -3.83 3.21 1.47 -0.23
Zm00001d014202 (GRMZM2G133401)
- - - - 1.61 2.43 - - - - 0.49 0.44 - - - -0.6 3.72 - -0.8 -3.15 - - - - -1.0 - - - - - - - - - - 3.43 -
- - - 4.77 -2.94 - -1.54 - - - - -0.88 - - - -3.73 1.63 - 1.07 - - - - -2.54 - 0.74 - - - - - - - - -5.15 0.23 -1.67
Zm00001d018262 (GRMZM2G166027)
- - - 4.08 -1.07 - - - - - - -0.73 - 1.06 -2.11 -0.79 -0.15 -0.97 0.31 -1.11 -0.86 0.74 - -3.13 1.11 - - -2.54 - - - - -5.15 -4.97 -0.29 1.01 2.45
- - - 4.86 -3.09 - -2.43 - - - - -2.09 - - - -0.73 - - -1.05 -2.05 -2.44 - - - 0.88 - - -0.43 - 1.31 - - -3.22 - -3.25 -1.7 -1.32
Zm00001d018683 (GRMZM2G045031)
-3.88 -2.79 -0.68 1.99 2.02 -1.88 -1.03 -4.91 -4.2 -1.77 0.38 -0.12 - - -1.29 -3.35 - -3.81 -3.38 - - - 1.19 - -3.38 - 2.99 0.87 - - 1.34 - - -0.83 1.36 2.49 -0.64
- - - 5.21 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21 -
Zm00001d020330 (GRMZM2G033109)
- - - 3.66 -1.63 2.54 2.37 - - - - -0.24 - - - 0.73 0.1 - 0.79 - - - - - - - - -2.35 - - - - -2.09 - -1.66 2.43 0.71
Zm00001d020350 (GRMZM2G081502)
- - - - -0.65 -2.08 -5.75 - - - 1.26 -0.17 - -2.04 -3.57 -2.72 - - - - -4.78 - - - -5.43 - 4.19 -3.13 - - - - - -5.67 - 3.64 0.5
Zm00001d020351 (GRMZM2G074781)
- - -2.94 -2.83 -0.72 -2.03 -6.29 - -1.3 -2.55 -0.47 -0.27 - -3.33 0.07 -4.23 - -3.47 -6.36 -7.64 -6.1 - 0.7 - -3.7 - 4.01 -1.46 1.76 - - - -5.06 -1.02 -4.26 3.28 -0.96
- - - - - - - - - - - - - - - 2.49 - - - - - - - - - - - - - - - - - - - 4.97 -
- - - 5.19 - - - - - - - -1.96 - - - -2.3 - - - - - - - - - - - - - - - - - - - -2.86 -
- - - 5.21 - - - - - - - - - - - -5.28 - - - - - - - - - - - - - - - - - - - - -
Zm00001d029015 (GRMZM2G326335)
-1.55 - - - -2.74 2.9 1.31 - - - - -1.17 - - -2.19 0.08 -0.23 - 2.33 - -2.2 - - - - - - - - - - - - - -0.46 3.29 3.03
- - - - 2.27 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.01 -
- - - 5.18 - - - - - - - -4.2 - - - -6.36 -1.35 - -2.24 - - - - -3.42 - - - - - - - - - - - - -
Zm00001d031057 (GRMZM5G841841)
- - - 4.39 - - - - - - - -3.92 - - - -0.76 - - - - - - - - - - 3.48 - - - - - - - - -0.7 1.85
- - - - - - - - - - - -0.16 - - - - 4.77 - - - - - - - - - - - - - - - - - - 3.13 -
-1.43 1.25 -0.39 3.55 -0.14 -1.32 -1.06 0.85 - - 0.15 -0.7 -0.31 0.73 -3.14 -0.34 -0.07 0.07 0.69 -3.83 -0.22 1.02 - -1.26 0.04 - - -3.68 - - -0.71 - -1.87 -1.59 1.22 -0.1 -0.95
- -1.48 -0.48 4.42 -2.19 - - - - - - -1.62 - - - -1.47 -1.6 0.94 -0.03 - -2.23 - - -2.07 - - - -0.51 - - - - -4.28 - 3.15 -3.02 -2.29
Zm00001d031748 (GRMZM5G894416)
- - - 5.04 - - - - - - - - - - - -1.8 - - - 1.18 - - - - - - - 0.72 - - - - - - - - -
- - - 4.96 0.63 - - - - - - - - - - -0.95 - - 0.05 1.1 - - - - - - - - - - - - -0.74 - - - -
Zm00001d032946 (GRMZM2G057093)
0.88 -3.65 -2.53 -0.19 3.0 0.64 0.28 -1.66 -2.67 -3.57 -0.41 0.1 -4.65 - 0.68 -3.31 -7.68 -3.01 -0.39 -5.58 -5.91 -5.7 3.46 -8.15 -3.12 -0.19 1.32 -2.25 - - - - -9.21 -4.52 -2.27 1.21 -0.21
Zm00001d032947 (GRMZM2G162505)
-1.05 -1.59 -1.76 2.57 2.87 -0.85 -1.88 -2.96 -3.08 -4.54 -2.36 -0.95 - -4.01 0.8 -5.77 - -4.43 -3.74 -6.57 - -7.31 1.16 -6.55 -6.29 1.3 3.04 -1.21 -1.08 - -3.59 - -4.1 -3.18 -0.77 1.71 -0.22
- - - 4.21 -2.16 0.91 - - - - - -3.67 - - - - 2.73 - 0.67 - - - - - - - - - - - - - - - 0.93 1.52 1.71
- - - 3.55 -3.4 0.48 -1.23 - - - - -7.82 - - - -2.37 1.23 - -3.25 - - - 3.88 - - 1.44 - - - - -0.36 - - - -2.73 -0.4 0.64
Zm00001d033499 (GRMZM2G446350)
- - - 4.77 -1.19 - - - - - - - - - - -0.5 3.01 - - - - - - - - - - -1.19 - - - - - - - - -
- - - 3.52 -0.57 0.67 1.68 - - - 0.66 -2.42 - - - -3.3 1.51 -0.08 -1.73 -3.97 -2.97 - - - -1.27 - - -4.49 - - -0.04 - -1.87 -1.49 -1.56 2.14 2.82
Zm00001d035101 (GRMZM2G374248)
- - - 5.21 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.48 0.89 1.92 3.23 2.84 -2.32 -4.89 -8.27 -1.63 -2.15 -1.74 0.35 - -2.73 1.28 0.41 -4.47 -3.22 -3.27 -10.18 -7.11 - -6.52 -4.22 -3.6 1.59 -1.84 -1.72 - - -3.63 - -5.98 -4.64 -2.77 -0.91 1.23
Zm00001d035645 (GRMZM2G164311)
- - - 4.59 - - - - - - - -1.97 - - -1.63 -1.16 - 2.89 -1.43 0.16 - - - - - - - - - - - - - -0.01 1.02 - -
Zm00001d035646 (GRMZM2G334181)
-6.75 -8.59 -5.29 2.33 1.13 1.49 0.02 0.99 -0.13 -1.72 0.62 1.09 -1.42 0.59 0.63 1.68 -8.19 -5.11 -1.8 -10.33 -6.9 -5.41 2.0 - -4.73 -1.4 0.02 -0.31 - -1.32 -2.05 -5.69 -8.12 -3.61 -2.05 0.99 1.52
Zm00001d036814 (GRMZM2G339009)
- - - 4.26 -1.18 0.9 -1.42 - - - - -0.85 - - -3.87 -2.01 -0.69 - 0.07 - - - 3.13 - -1.83 - - -4.13 - 0.71 - - - - -0.85 0.12 -2.11
Zm00001d037205 (GRMZM2G008353)
-3.71 -4.03 -1.58 -0.22 0.86 -0.11 -1.89 -1.71 0.24 -0.7 0.46 0.6 -3.55 -0.54 2.07 -0.37 -3.9 -1.8 -4.39 -12.48 -1.92 -3.38 -0.44 -2.45 -2.17 1.07 2.37 -0.98 2.81 -4.72 -1.5 -0.25 -2.73 -0.87 -2.53 1.21 -0.24
Zm00001d037656 (GRMZM2G447795)
-7.47 -9.47 -3.42 -1.02 1.79 -3.53 -1.03 -1.73 -4.49 -4.11 -2.32 -2.16 -9.0 -4.29 -0.91 -4.61 -5.39 -6.6 -4.59 -2.96 -8.57 -9.05 -1.94 - -3.36 -4.08 3.81 0.65 -1.02 -7.03 2.9 -3.67 -2.36 0.58 0.91 1.54 -2.7
- - - 5.19 -6.42 - - - - - - -3.43 - - - -4.36 - - -2.39 -5.26 - - - - - - - - - - - - - - - - -
Zm00001d038630 (GRMZM2G163008)
- - - 0.83 0.55 -2.94 -2.01 - - - -1.36 -2.82 - - -5.44 -4.66 -3.24 0.66 -1.4 0.01 1.15 - 2.2 - - 0.68 2.22 1.16 - - - - - - - 3.85 -
Zm00001d039520 (GRMZM2G146644)
- -2.51 -5.49 0.79 0.99 -5.94 -7.3 - - - -4.31 -0.08 - - -2.5 -10.56 - -6.16 - -9.0 -8.39 - 2.23 - -2.87 -3.65 0.29 2.73 1.56 - 1.96 1.54 2.42 0.74 -5.55 0.89 -1.09
-2.76 - -0.85 - -2.35 0.86 -0.21 1.93 - - - -0.93 - - -1.82 -2.77 0.79 2.43 0.05 -2.65 - 1.15 - - -0.55 - - - - 1.26 - 3.11 -2.62 1.38 0.45 1.2 -
Zm00001d041356 (GRMZM2G373936)
- - - 4.49 -5.08 0.89 - - - - - -2.68 - - - -3.77 - - - -3.97 -5.18 - 3.59 - - - - - - - -3.92 - -5.95 - - - -3.23
Zm00001d044356 (GRMZM2G111132)
- -1.24 - 3.2 2.97 - -1.83 - - - 1.52 0.16 - - -1.7 -1.61 - - -1.78 - - - - - 0.48 - 1.71 2.0 - - 0.03 - -2.66 -0.49 0.82 1.04 -
- - - 5.06 - - - - - - - - - - - -2.45 1.56 - - - - - - - - - - - - - - - - - -1.11 - -
Zm00001d044833 (GRMZM2G124276)
1.25 -0.33 -1.84 1.59 1.62 -4.17 -3.35 -1.05 -2.92 -3.23 -1.55 -1.69 0.46 -0.1 -0.77 0.12 0.32 -0.71 -0.23 -3.64 0.67 -0.1 -0.58 0.26 -0.29 -1.22 1.72 -0.45 -1.08 0.44 1.89 -4.46 -2.35 -0.98 0.63 0.4 -1.45
- - - 5.17 - - - - - - - -3.61 - - - -5.36 - - -0.03 - - - - - - - - - - - - - - - - - -
- - - 5.11 0.03 - - - - - - -4.73 - - - -2.99 - - -2.34 -0.03 - - - - - - - - - - - - - - - - -
Zm00001d047192 (GRMZM2G093092)
-9.76 - -4.99 - -2.42 -2.01 -1.85 -3.05 - - 0.79 -0.01 - - -3.93 -4.51 - - -10.17 -6.8 -7.84 - 4.09 - -3.46 - 3.23 -4.42 - - -7.14 - - -6.6 -3.64 2.72 -3.26
Zm00001d048232 (GRMZM2G095822)
- - - - 3.03 0.17 - - - - - -2.69 - - -2.43 1.23 -2.23 - -2.42 - 0.94 -0.64 - 1.33 -0.35 0.85 -1.29 0.1 - - - - 0.31 -1.67 -4.48 3.07 2.46
Zm00001d048408 (GRMZM2G370797)
- - - 5.21 - - - - - - - - - - - -6.45 - - - - - - - - - - - - - - - - - - - - -
Zm00001d049217 (GRMZM2G098102)
- - -5.1 - -6.26 -2.38 -5.43 - -7.51 -7.33 -4.27 -0.98 - - -4.42 -5.74 - - -7.0 - - - -0.98 - -6.37 - 4.88 -6.08 - - - -4.0 - -8.33 0.01 2.33 -8.4
Zm00001d049403 (GRMZM2G453855)
- - - - -2.23 -0.72 3.56 1.02 -0.99 - - -2.79 - - - 0.54 1.8 - -0.18 -1.15 -0.94 - - - -2.86 2.44 - -2.22 - - - - -0.82 -1.47 1.14 1.63 1.56
Zm00001d049426 (GRMZM2G148014)
- - - - 1.58 3.96 - - - - - - - - 1.94 - - - - - - - - - - - - - - - - - - - - 3.87 -
Zm00001d050446 (GRMZM2G093121)
- - - - 2.17 - 1.22 - - - - 1.32 - - - - - 2.31 0.66 - - - - - 0.31 - - -1.13 - - - - - - 2.84 3.61 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.