Heatmap: Cluster_124 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d001776 (GRMZM2G377694)
- - -7.47 - -6.26 -6.08 - 2.97 -3.51 -4.07 - -4.35 -4.12 -0.56 -1.57 -2.92 0.15 0.17 -3.82 -8.47 2.97 2.17 - 1.63 3.1 - -5.68 -1.31 - -2.1 -3.5 - -6.05 -3.55 -2.08 -2.98 -2.18
- - - - - - - - - - - -0.41 - - - -4.15 - - - 0.79 - - - - - - 3.02 4.05 - - - - 2.09 2.38 -1.52 - -
- - - - 2.28 - - - - - - 1.88 - - - -1.08 - - - 3.72 - - - - - - - 3.15 - - - - - - - 2.57 -
Zm00001d002955 (GRMZM2G114149)
- -0.26 1.03 - -1.19 -1.64 - -0.22 - -2.03 0.63 -2.41 -1.32 -1.25 -2.83 -0.01 -0.81 0.48 -0.5 -4.38 0.02 -0.37 -0.73 1.05 0.87 - 2.75 0.28 - -0.25 1.89 1.06 -0.71 0.83 -2.83 0.69 -0.26
Zm00001d003229 (GRMZM2G389789)
- - - - -2.11 - - - - - - -0.22 - - - 0.03 3.79 - 1.67 -1.0 - - - - - - - 3.0 - - - - 1.32 -1.04 - 1.64 1.7
Zm00001d005802 (GRMZM2G045243)
-1.77 -1.84 -5.24 -1.58 -0.73 -2.22 -4.35 -1.03 -1.97 -2.27 - -2.11 1.59 1.28 -1.15 -0.03 0.13 0.77 -1.6 -6.32 1.77 2.45 - 0.0 2.26 -5.14 -0.99 -0.93 1.45 0.71 -5.23 -3.5 -3.25 0.96 -2.73 -0.23 -0.34
- - - - 2.37 - - - - - - - - - - 0.65 - - - - - - - - - - - 4.92 - - - - - - - - -
Zm00001d007840 (GRMZM2G146688)
-4.8 -5.55 -6.2 -4.37 -4.98 - - 3.48 -7.24 - - -5.37 -0.61 -2.04 -1.63 2.06 1.98 1.08 -4.5 -9.86 0.88 -0.07 - 2.48 1.19 -5.9 -0.32 -5.13 - -4.5 0.02 -3.72 -5.37 -6.13 -0.51 -2.81 -0.65
Zm00001d008688 (GRMZM2G165354)
- 2.83 - - 0.52 - - - - - - - - - - -1.28 2.96 3.44 - - - - - - - - - 2.89 - - - - - 0.99 - - -
Zm00001d008956 (GRMZM2G096525)
-4.41 -4.5 -2.29 -0.23 1.12 - -5.03 1.09 - - - -5.66 -1.5 0.53 -4.24 0.69 -1.08 0.07 -1.98 - -0.55 -1.49 - 0.12 4.32 - -1.01 -3.68 - - 0.78 - -6.16 -5.26 -1.29 -2.87 0.33
- - - - - - - - - - - - - - - 0.4 - - - - - - - - - - - 5.16 - - - - - - - - -
Zm00001d009202 (GRMZM2G080442)
- -2.8 - -2.49 -3.04 -5.85 -6.32 2.39 - - - -4.96 -0.67 0.93 -1.6 1.74 2.13 0.88 -3.13 - 2.39 1.65 - 1.35 2.04 - -3.57 -2.34 0.05 -1.53 0.06 - -1.3 -4.13 -2.33 -3.88 -2.19
-1.45 - -0.72 - -0.34 -1.73 - - - - - -0.14 - - -1.82 -0.61 - - - - - - - 1.78 3.03 0.15 - -2.11 - - - - -2.73 - 4.28 -1.81 -1.7
Zm00001d012043 (GRMZM2G158544)
-5.01 -3.82 -2.17 -2.8 -2.59 - -7.9 -0.54 - -5.45 -5.87 -5.55 -3.42 1.6 -4.92 -0.05 1.99 0.17 0.3 -4.22 2.38 1.27 - 2.55 2.61 -0.7 -1.15 -2.29 - -1.88 1.13 - -2.62 -0.3 -1.05 -2.66 -2.7
- - - - - 3.72 3.01 - - - - 2.49 - - - -0.66 - - - 0.05 - - - - - - - - - - - - - - -0.65 1.75 2.18
Zm00001d012291 (GRMZM5G873917)
0.09 -0.93 -2.42 1.1 0.34 -3.16 -5.8 -0.1 -0.92 -4.72 -4.41 -1.88 -2.68 0.75 -0.32 -1.74 -0.65 0.13 -3.16 -1.15 2.37 1.81 - 1.12 1.86 0.42 -0.68 -2.95 -0.09 -2.66 -0.71 -2.62 -4.78 -1.44 2.0 -0.48 0.12
Zm00001d017066 (GRMZM2G056988)
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21 - - - - - - - - -
Zm00001d017237 (GRMZM2G507217)
- 0.21 1.28 - -0.6 - -0.26 - - - - -0.01 - - 2.1 -0.16 - - -0.59 0.98 - - - 0.04 -0.37 - - 1.9 - - - - 2.28 1.19 -0.78 -2.87 3.28
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21 - - - - - - - - -
Zm00001d018227 (GRMZM2G080452)
-6.1 - -4.47 -1.87 -3.8 -6.26 -1.2 1.73 -1.37 -1.82 -3.65 -0.58 - -1.59 -1.64 1.07 2.08 -0.38 -2.0 -3.94 3.22 1.82 -0.48 1.25 2.3 - -1.91 -4.03 - - -0.03 - -6.81 -6.61 -3.55 -1.66 -0.33
Zm00001d022184 (GRMZM2G017266)
-2.53 -2.42 -3.07 -0.81 -0.38 -0.99 -0.59 0.43 -0.37 -0.69 -2.82 -0.75 -0.73 -2.0 -0.01 -0.39 -0.27 -0.05 -0.15 -5.91 2.39 1.07 -0.45 1.59 2.59 0.4 -1.99 -2.45 -0.43 -1.67 -1.1 -0.03 -3.17 -2.65 1.32 -0.52 -1.36
- - - - 0.21 - 3.14 - 1.87 - - 1.16 - - -3.04 -0.84 1.56 1.38 0.34 - -1.46 - - 0.67 0.45 - - 2.36 - - - - 1.25 -0.42 0.28 -0.24 -
Zm00001d026663 (GRMZM2G106781)
0.95 -3.43 -1.35 -4.45 -0.84 -5.46 -6.61 -1.06 -0.27 -1.84 - -3.11 0.82 1.09 1.49 -2.92 -2.21 1.13 0.57 -7.63 -1.94 -0.74 -3.96 -2.77 2.18 3.03 1.74 -2.96 -0.96 - -8.08 - -4.72 -0.76 1.06 -0.8 -0.99
Zm00001d027492 (GRMZM5G887276)
-0.92 -1.44 -1.29 -0.81 -2.29 - - 2.6 - - - -4.34 1.88 1.2 -0.7 1.93 1.7 1.04 -5.85 - 0.57 -0.2 - 2.46 0.91 - -1.12 -3.35 - - -0.04 - -3.93 -4.35 -0.18 -2.18 -0.71
Zm00001d027973 (GRMZM2G053627)
0.43 -0.79 -3.63 -0.32 -1.56 -1.79 -2.05 -0.35 -2.14 -2.49 -1.58 -1.5 -0.63 1.69 -0.74 -0.42 0.45 0.72 0.16 0.84 0.92 1.12 -1.28 -0.32 1.14 -0.22 -0.82 0.25 - 1.85 0.71 0.94 -1.94 0.28 -1.46 -0.6 -0.81
- - - - -1.4 0.1 3.26 - - - - 0.77 - - -0.22 1.19 - 3.12 2.56 - - - - -0.43 0.7 - - - - - - - - - 0.36 - 1.49
Zm00001d028129 (GRMZM2G005624)
-3.36 -5.73 -3.58 -0.71 0.12 -6.98 - -0.44 - - -4.24 -4.42 -2.57 -0.12 -4.65 -0.22 -1.76 -0.48 -1.27 -8.01 1.22 1.47 - 2.11 3.52 0.98 -5.22 -0.08 1.16 0.99 -2.56 - -4.75 0.22 -1.36 -1.4 -0.6
- - - - -1.36 - - - - - - - - - - -1.2 - 4.23 - - - - - - - - - 3.38 - - - - 2.46 - - 0.65 -
Zm00001d032182 (GRMZM2G152543)
- 0.21 0.89 2.09 1.14 - - -2.49 - - - -2.19 - -0.25 - 0.59 - 0.35 -3.39 - 1.09 -0.06 - 2.65 3.1 - - -0.05 - - -0.03 1.04 -1.62 -0.53 - -1.97 -2.67
Zm00001d033139 (GRMZM2G120621)
-0.19 - -6.71 0.98 1.14 -1.08 -6.99 -3.96 - - 0.62 -1.19 -1.77 0.34 -2.17 -0.29 -2.21 -0.33 -4.56 -6.0 -0.18 -1.51 3.62 -2.78 3.12 -1.38 -1.97 -1.76 -0.76 - 0.26 - -5.23 -2.68 -4.31 -2.69 -1.86
Zm00001d033330 (GRMZM2G056303)
0.84 - - - -0.61 - - 1.66 - - - -7.93 -1.89 1.95 -3.09 -0.57 2.81 1.02 -0.3 - -0.91 -1.09 - 1.84 2.33 - -3.46 -0.37 - 2.12 -0.86 - -0.08 -2.47 - -3.33 -
Zm00001d033605 (GRMZM2G159149)
- - - - -10.1 -3.13 -2.61 -0.75 -5.15 -6.59 -7.58 -4.25 -3.94 0.53 -1.94 0.16 -1.14 -2.86 -4.79 -9.67 3.0 2.31 - 2.45 3.51 -8.74 -5.75 -3.33 - -2.52 - - -9.43 -3.0 0.6 -1.77 -1.06
- - - - 0.98 - - - - - - - - - - 0.77 - - - - - - - - - - - 4.17 - - - - - - 3.2 2.62 -
Zm00001d035567 (GRMZM2G101642)
- - - - 1.13 - - - - - - 2.62 - - - 2.26 - 2.09 - - - - - - - - - 1.75 - - - - - 4.02 - - -
- - -0.02 - -1.13 - - 3.51 1.57 - - -0.92 - - - -3.93 - - -2.62 -2.24 - - - - - - 1.77 2.26 - - - - 2.71 -1.25 - 0.64 1.8
2.05 0.5 0.11 - -0.39 - - - - - - 0.12 - - -0.51 -0.56 -0.1 - 1.67 - - 3.29 - - 0.6 - - - - - 0.96 - 2.09 2.14 - 0.13 -
Zm00001d037430 (GRMZM5G837318)
- - - - 2.88 - - - - - - 3.51 - - - 1.79 - - 3.88 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - 0.56 - - 2.04 -2.9 - 2.84 - - - - - - - - - - - - - - - - -0.53 2.17 4.24
- -3.39 -1.45 - -1.49 - - 1.48 - - - -1.52 1.98 2.35 -2.26 0.03 2.65 -0.6 -2.18 - 0.86 0.21 - -0.53 2.32 -4.02 -2.38 -2.45 - 2.55 -2.24 - - -2.31 -2.27 -4.25 -
Zm00001d041041 (GRMZM2G360680)
- - - - -3.55 -1.51 -2.69 2.22 -1.34 -0.01 - -0.88 1.47 0.95 0.09 1.14 0.35 0.26 -0.41 -5.67 2.36 -1.82 - 0.59 2.12 -0.2 -0.02 -4.3 - 0.24 -2.17 - - -2.78 0.96 0.25 -0.39
-2.66 - - - 1.2 2.18 1.91 - - - - 0.28 - - -3.81 -0.85 - 3.6 0.48 0.72 -2.4 - - - -2.39 - - 1.0 - - - 1.36 -0.11 1.67 - -2.14 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Zm00001d044519 (GRMZM2G071322)
- - - - -0.44 - - - - - - 0.05 - - - 0.67 - - - 3.27 - - - - - - - 4.58 - - - - - - - - -
Zm00001d045120 (GRMZM2G156006)
1.67 -0.29 -2.74 1.65 0.7 - - 1.96 - - - -4.63 -1.08 -2.33 -2.71 -0.79 -0.95 0.18 -0.54 - 1.62 0.51 - 2.53 1.7 1.16 1.55 -3.76 - - -3.57 -2.14 -6.45 -6.38 -0.4 -3.41 -1.05
Zm00001d046254 (GRMZM2G033566)
- - - - -9.12 - - 2.8 - - - -6.65 0.59 1.19 -1.29 0.63 0.41 0.89 -1.18 -9.87 2.49 1.01 - 1.03 2.27 - -1.07 0.52 - -0.86 -0.03 - -4.15 0.37 -1.24 -1.47 -0.71
Zm00001d047803 (GRMZM2G402015)
- - - - -1.28 - - - - - - -1.86 - - 1.61 -1.05 - - 0.33 - - 4.09 - - 2.45 - - 1.73 - - - - - - -1.19 2.41 -
Zm00001d047820 (GRMZM2G103595)
-2.25 -1.95 -4.61 -2.23 -2.23 -0.64 -0.93 0.51 -0.99 -0.71 -1.88 0.03 0.32 -0.98 0.51 -0.05 -0.01 -0.2 -1.8 -5.93 2.47 1.65 0.71 1.05 2.69 -1.41 -1.44 -2.23 - -0.95 0.16 0.82 -3.78 -1.91 -2.4 -0.8 -1.1
Zm00001d048004 (GRMZM2G021573)
-8.87 - -2.39 -4.85 -4.72 -8.57 - 2.27 -3.32 -4.49 - -3.53 -0.55 -0.92 -1.34 1.67 2.42 0.48 -3.24 - 1.71 1.62 - 3.04 1.49 -5.55 -1.34 -2.76 - -3.89 -0.81 - -4.85 -3.92 -1.03 -1.62 -0.82
- - -4.56 1.06 0.22 - - - - - - -2.96 0.85 3.28 -7.49 -0.8 -0.75 -0.87 -4.51 - 1.44 1.37 - -2.78 2.13 -0.36 - -1.43 - 2.41 - - -3.4 -4.86 -1.87 -0.15 1.45
Zm00001d048984 (GRMZM2G127162)
2.86 1.89 -1.13 1.44 1.42 -3.38 - - - - - -6.5 -1.63 -2.88 -2.93 1.23 -1.59 -3.53 - - 1.1 - - 0.69 3.18 -1.06 -1.41 -6.46 - - - - - - 0.73 -1.8 0.08
Zm00001d049993 (GRMZM2G045531)
- - - - - - - - - - - 3.22 - - - - - - - 4.28 - - - - - - - - - - - - 3.05 - - - -
Zm00001d051410 (GRMZM2G399112)
0.24 -2.89 -4.36 -0.63 -1.41 -3.57 -2.0 0.01 0.02 -0.46 - -2.2 0.36 -1.92 -1.8 0.1 0.37 0.83 -1.79 -8.37 1.15 2.24 - 2.06 2.66 -0.75 -0.33 -1.96 -0.84 0.3 -0.12 0.45 -2.13 -1.3 -0.66 -0.86 -3.45
- - - - - - - - - - - 3.26 - - - 1.51 - - - - - - - - - - - - - - - - - - 4.11 2.87 -
- - - - - - - - - - - - - - 5.15 0.67 - - - - - - - - - - - - - - - - - - - - -
Zm00001d052162 (GRMZM2G079316)
-2.53 -4.01 -1.47 -0.65 -0.27 -2.04 -2.8 -0.42 -0.94 -1.03 -3.15 -1.34 0.73 0.71 -0.87 0.48 0.67 0.96 -0.7 -0.87 1.27 1.49 -3.72 2.0 2.4 -1.17 -2.07 -0.84 -2.2 -0.04 1.11 -0.24 -0.56 -1.13 -1.05 -1.0 -2.14
- - - - - - - - - - - 0.33 - - - -1.07 - - 3.31 1.75 - - - - 4.46 - - - - - - - - - - - -
Zm00001d053153 (GRMZM5G814787)
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.21 - - - - - - - - -
Zm00001d053242 (GRMZM2G367657)
- - - - -0.79 - - - - - - 0.99 - - - -0.02 - - 2.19 - - - - 1.3 1.46 - - -0.09 - - - - 1.76 - 4.28 - -
- - - - -2.38 - - - - - - -0.87 - 1.57 -2.96 -1.08 1.19 - - 0.49 - - - - -0.11 2.21 - 2.95 - - - - - 0.15 3.45 -2.63 1.8
Zm00001d053386 (GRMZM2G098796)
- - - - - - - - - - - - - - -0.42 -0.65 4.1 - - - - - - - - - - - - - 3.4 - - 2.99 - - -
Zm00001d053391 (GRMZM2G085751)
- - - - -6.26 - - 1.79 -3.88 - - -2.94 -2.11 1.5 0.52 -0.54 -0.78 -1.52 -3.87 -6.68 -0.88 1.38 - -1.08 3.42 - - -6.15 - - -0.81 2.94 - - 1.58 -0.17 -0.6

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.