Heatmap: Cluster_169 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots (apex), 7 DAG
Roots (differentation zone), 4 DAP
Roots (elongation zone), 4 DAP
Roots (meristematic zone), 4 DAP
Roots (stele cells), 7 DAS
Roots (tip)
Leaves (rosette), 21 DAG
Leaves (rosette), 29 DAG
Leaves (rosette), 35 DAG
Leaves (rosette), 42 DAG
Leaves (rosette), 57 DAG
Epidermis cells
Mature guard cells
Stems (internode)
Stems (internode), senescent
Meristem (M1-3), 7-9 DAG
Meristem (M4-6), 1-12 DAG
Meristem (M7-1), 13-16 DAG
Axis of the inflorescence
Pedicel
Flowers (receptacles)
Flowers (floral buds)
Flowers (sepals)
Flowers (petals)
Flowers (stamen filaments)
Flowers (anthers)
Flowers (carpels)
Flowers (ovules)
Stigmatic tissues
Pollen
Siliques
Siliques, senescent
Pods of Siliques
Pods of Siliques, senescent
Embryo
Endosperm
Seeds, dry
Seeds, from senescent siliques
Seeds, young
Seeds, germinating
Seedlings, 5 DAG
Seedlings, 11 DAG
Seedlings, 14 DAG
Seedlings, etiolated
-0.67 0.83 -2.93 -1.27 -1.08 -1.1 -0.79 0.7 -0.18 -0.09 -0.21 -4.76 - -2.52 -1.45 -1.51 -2.64 -2.2 -2.85 -1.65 1.99 -3.82 -1.65 0.07 -1.69 -1.7 0.26 1.82 -2.39 - -0.98 -3.94 -1.55 -1.72 0.01 3.02 -0.03 -2.34 3.2 -2.13 -4.06 -2.86 -1.02 -0.18
AT1G10010 (AAP8)
- - - - - - - - -7.72 -7.47 -6.59 -5.56 - - - -5.98 -4.85 -4.62 - - -0.02 -1.95 - - - -3.67 0.08 2.72 - -4.63 0.43 - -2.49 -5.93 - 4.65 - - 3.03 -6.13 - - -6.04 -6.83
-4.48 - - - - - - - - - -6.17 - - -2.84 - -2.22 -1.15 -0.63 - - 1.15 - - - - -4.12 -6.08 - - - -0.47 -0.36 -4.13 - - 4.73 - -1.74 3.56 - - - -4.83 -4.06
- - - - - - 1.73 -4.05 - - - - - - - -1.6 1.61 0.76 - - 0.89 0.26 -4.59 - -0.66 - -0.46 1.68 - - 0.28 -2.11 0.45 - - 3.75 - -1.6 2.71 -2.3 -4.42 1.24 0.82 -1.25
- - -0.31 - - -0.11 - - - - - - - 1.07 - - -3.91 -2.67 - - -2.44 - -2.4 -1.31 - - -3.29 -1.24 - - 0.76 - -3.33 -1.15 - 4.82 - - 2.98 -2.4 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -4.2 -8.25 - - - 1.71 - 0.65 - -0.45 5.26 - - -3.7 - - - - -
AT1G21850 (sks8)
- -3.38 - - - - - - - - - - - - - -4.35 - -7.56 - - 2.3 - - - - -6.83 -5.81 - - - 0.96 - - - - 4.39 -5.72 - 4.0 - - - - -
- - - - - - - - -0.92 -0.14 0.18 - - - -1.95 - - - - - -3.86 - - - - -2.69 - - - - 1.36 - -0.23 -3.51 -3.36 5.21 - - -1.7 - - - - -
- - - - - - - - - -4.44 -5.49 - - - - - - - - - 2.64 -2.66 -4.69 - - - -1.23 0.76 - -0.78 1.1 - -1.96 - - 4.09 - - 3.93 - - - - -3.11
- - - - - - - - - - - - - - - - - - - - 2.41 - - - - - -3.82 - - 0.14 1.51 - -1.19 - - 4.34 - - 3.8 - - - - -
- -1.44 2.23 - - -1.56 -1.39 -1.5 -5.55 -5.32 -5.55 - - 0.2 - - -1.35 0.84 1.69 -3.09 -2.52 -0.54 2.94 -0.04 -2.0 - 0.15 - -0.15 - -1.28 -2.01 -2.09 - -2.15 -4.94 - - -4.33 -1.49 1.19 -1.32 0.44 3.78
- - - - - - - - - - - - - - - - - - -6.93 - 2.39 -5.9 - -6.99 - -5.5 -1.14 0.86 -5.31 - 2.7 -5.93 0.03 -6.84 - 3.58 - - 4.08 -7.45 - - - -4.96
AT1G60980 (GA20OX4)
- - - 0.88 - -0.53 - - - - - - - - - - - - - - -3.05 - - - - -1.52 -0.31 - - - -5.43 - - - - 5.28 - - -2.06 -2.45 - - -0.54 -2.13
- - - - - - - - - - - - - - - - -7.97 - -6.63 - 1.75 - - - - -4.72 -6.63 - - - 2.37 -6.91 -0.12 - - 4.16 - - 4.04 -8.81 -6.16 -5.7 -5.62 -8.33
- - - - - - - - - - - - - - - - - - - - -1.96 - - - - -1.24 - - - - -0.28 - - - - 5.07 - - 3.08 - - - - -1.44
AT1G65770 (AMR1)
- - - - - - - - - - - - - - - - - - - - -5.94 - - - - -7.0 -5.2 -2.59 - - 0.64 - -1.6 - - 5.37 - - -0.8 - - - - -5.64
-2.25 3.24 3.12 -0.31 - -0.43 - - - - - - - - - - - - - -4.79 -1.02 -2.31 - - - -3.28 -1.33 1.33 - - -0.12 - -2.37 -4.25 - 3.8 - - 1.29 -1.33 - - - 1.25
- - -5.37 - - -6.11 - - - - - 0.67 - -5.22 -3.66 - - -6.59 - - 1.47 -0.3 -6.15 -4.3 - -6.81 -1.09 -0.46 4.01 - 1.31 -5.32 -0.86 -5.14 -1.41 2.74 -4.12 - 3.47 -6.84 -6.03 - -3.75 -7.08
-2.25 -2.47 - - - - -4.7 - 1.68 -3.25 0.57 - - -3.34 3.58 0.16 1.43 -0.47 - - -1.53 -1.64 - - - -5.12 -6.04 - - - -6.99 - -9.22 - - - -7.72 -6.91 -9.77 -4.44 -1.39 -1.05 1.97 4.05
AT1G73607 (LCR65)
- - - - - - - - -6.56 -5.29 -5.39 - - -5.84 - - - - - - 2.06 - - - - - -0.94 0.57 -6.11 - 1.1 -6.07 -1.43 -5.76 -4.47 4.18 - - 4.09 -7.98 - - - -5.66
-3.34 -6.12 -4.76 -2.02 - -3.06 - -6.83 -2.68 -0.35 1.37 - - - - - - - - - 1.41 -3.96 - - - - -1.6 0.94 - - 1.07 - -1.93 -7.14 - 4.59 - - 2.99 - - - - -0.95
AT1G78710 (TBL42)
- -4.51 -2.87 - -4.19 -3.43 - - - -5.96 -2.66 -3.29 - - - - - -7.53 - - 0.02 1.24 - -4.5 - -3.6 0.7 3.79 - - 1.55 - -1.42 - - 3.79 - - 2.83 -3.01 - - - -7.42
- - - - - - - - - - - - - -4.86 - - - - - - -0.53 -0.42 - - - -6.36 -0.11 2.73 - - 2.6 -4.03 -0.14 - - 4.25 - - 3.12 - - - - -2.47
- - - - - - - - - - - - - - - - - - - - 2.25 3.34 - - - -0.21 0.3 2.89 - - 1.8 - - - - - - - 3.78 - - - - 1.26
AT2G05335 (SCRL15)
- - - - - - - - - - - - - - - - -5.09 - - - -1.43 - - - - - - - - - 3.23 - 0.67 - - 4.95 - - 0.76 - - - - -6.78
- - - - - - - - - - - - - - -1.83 - - - - - 2.35 - - - - - 0.03 3.11 - -1.51 1.77 - -1.08 - - 3.15 - - 3.98 - - - - -
AT2G14540 (SRP2)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.66 - -0.31 - - 5.32 - - -3.02 - - - - -
AT2G18870 (VEL3)
-2.66 -0.89 - - - - - - -4.41 - - - - - - - - - - - -0.45 -1.74 - - - 0.2 -0.78 1.63 - - 1.23 - -0.62 -0.59 - 4.84 - - 2.34 - - - - -4.81
- - - - - - - - - - - - - - - - - - - - -3.62 - - - - - - - - - 1.66 - -0.13 - - 5.3 - - -1.51 - - - - -
- -0.37 -1.19 - - - - -3.08 -2.31 -1.7 -2.79 - - -5.06 -3.15 -6.67 -8.18 - -4.0 -5.5 -0.78 - - - - - -5.84 - -2.53 - 1.44 - -0.54 - - 5.21 - -4.71 -1.37 -4.45 -5.85 - -3.73 -2.96
-4.03 -3.48 -4.59 - - - -7.32 - - - - - - - -6.98 -7.67 - -7.12 -6.75 - -1.27 -2.78 -7.77 - - -3.45 1.11 3.39 -5.55 -2.96 1.51 -2.16 -0.29 -4.59 -4.65 4.0 -4.96 -2.09 3.23 -3.42 -2.02 - -5.07 -1.45
AT2G37720 (TBL15)
-0.56 - -1.61 -4.87 - -5.31 -2.03 - - - - - - -0.98 - -5.06 - - -5.44 -1.84 -1.25 - -6.45 - - - -7.82 - - - 1.91 - -0.37 - -0.28 5.02 - - 0.81 -1.35 -2.06 0.01 -2.11 -4.53
- - - - - - - - - - - - - - - - - - - - -0.69 - -2.67 -1.77 - -3.52 -3.12 - - - 1.66 - -3.79 - - 5.02 - - 2.69 -1.04 - - - -2.46
- - - - - - - - -5.97 - - - - - - - - - -3.98 - -0.92 -2.01 - - - 2.25 -3.96 - - 4.26 0.83 - -1.7 - - 3.89 - - 0.72 - - - - -0.67
- - - - - - - - - - -5.88 - - - - - - - - - 1.98 - - - - -3.05 -0.49 0.01 - - -1.28 - -6.37 -2.46 - 4.27 - - 4.18 -4.46 - - - -2.59
- -6.01 -8.53 -7.89 - -7.25 -5.61 -10.06 - - - -4.92 - -8.45 - -5.72 -5.16 -5.14 -8.41 -6.86 1.67 - -7.22 -5.25 -3.04 -6.55 -2.06 -1.62 -6.68 -5.04 2.16 -8.69 -0.76 -5.27 -5.5 4.44 - - 3.52 - -0.79 -7.48 -5.02 -0.01
AT3G04735 (RALFL21)
- -3.21 -4.22 - - - - -4.95 -5.02 -5.84 -5.89 - - - - -4.35 -7.18 -6.24 - - 0.58 - - -4.28 - - - - - - -1.52 - -3.33 - - 4.95 - - 3.42 - -4.88 - - -3.54
- -7.37 -7.38 - - - - - - - - - - -6.65 -6.73 - -11.07 -9.6 -6.64 - 1.94 -1.21 -6.94 - -8.73 -6.75 0.51 2.76 -6.4 - 2.59 -6.88 0.22 -4.73 -6.5 3.27 - - 3.87 -7.82 - - - -5.05
- - -4.88 - - - - - - - - - - - - 0.33 -0.77 -4.73 - - 1.81 -1.39 - - -5.23 -6.26 0.11 3.26 - - 1.61 -3.38 -0.79 - -4.58 3.59 -1.51 -5.3 3.46 - - - -2.68 -3.05
AT3G15370 (EXP12)
4.75 0.98 3.07 - -4.61 -1.88 - -3.93 - - -6.02 - - -3.48 -5.96 - - - - - -6.27 - -6.76 - -3.23 - -5.18 -4.21 - - -4.5 - -6.77 -3.76 - -1.97 - - -5.06 1.48 -2.96 - -3.73 1.38
AT3G21850 (SK9)
-6.14 -5.37 -6.31 -4.66 - - - -8.31 -7.17 - -8.05 - - -4.24 -6.14 -6.31 - -6.9 -4.21 -5.68 -4.71 - -4.64 - - 2.75 -7.27 - -5.4 - 3.56 - 0.54 -6.15 -3.17 4.45 - -6.8 0.68 -6.78 - - -6.5 -
-4.55 -2.19 - - - - -4.13 -4.24 - - - - - -5.63 -4.81 -0.05 -2.7 -4.38 -2.82 -3.55 0.21 -2.81 -3.17 -1.61 -2.2 -7.47 0.15 3.47 - - 1.47 -4.87 -1.29 -5.56 - 3.85 - - 3.32 -5.24 -4.32 -2.85 -4.1 -3.06
- -6.83 - -8.35 - - - - - - - - - -8.91 -7.86 - -11.75 -11.29 -7.17 - 0.36 -2.79 -10.08 - - -8.53 -1.65 0.54 -5.95 - 1.78 -5.22 -0.84 -5.23 -6.89 4.91 -9.39 -9.58 2.71 -7.16 - - - -4.98
AT3G25420 (scpl21)
- -3.39 -3.99 - - - - - - - - -5.76 - - - - - - - - 1.06 - - - - -6.0 -9.23 - - - 1.94 - -1.06 - - 4.97 - - 2.61 -6.69 -6.65 - - -7.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
AT3G45150 (TCP16)
0.2 2.34 0.59 - - - - - - - - - - 0.16 - -0.75 -3.98 -2.12 - - - - - - - -1.54 0.09 2.14 - - 1.75 - 0.3 - - 2.16 - - 1.03 - -1.65 0.14 - 3.99
- 0.41 - - - - - - - - - - - - - - - - - - -0.67 1.57 - - - -0.22 -3.46 - - - 1.57 - - - - 4.77 - - 1.71 - - - - 2.23
-2.66 - - - - - - - - - - - - - - - - - - - 1.67 -1.08 - - - -2.48 -3.43 0.1 - -1.67 -1.18 - -3.79 - - 4.58 - - 3.82 - - - - -
- - - - - - - - - - - - - -5.64 - - -7.49 -5.28 -4.63 -5.5 1.63 -1.02 -7.64 -2.95 -0.31 -4.55 0.35 0.87 -2.31 -4.23 2.58 -6.86 0.33 - - 3.47 -6.11 -4.3 4.13 -6.69 - - -3.09 -4.65
-5.11 -2.6 - - - - - - - - - - - - - - - - - - -1.88 -0.56 -5.17 - - -3.91 0.53 3.53 - - 1.24 - 0.04 -3.24 -2.31 4.42 -5.68 - 2.2 - - - - -
- - - - - - - - - - - 1.04 - - - - - - - - 0.55 - - - - - -1.74 0.22 - - 3.47 - -0.77 - - -2.36 - - 4.73 - - - - -0.56
0.05 - - - - - - - - - - - - -1.03 - - - - - - -0.67 - - - - -0.47 - -1.02 - - 1.41 - -0.61 -1.94 -0.87 4.98 - - 1.9 - - - -1.28 -0.2
AT4G11510 (RALFL28)
- - - - - - -6.4 - -5.63 -7.63 -6.05 - - - -3.53 - - -8.24 - - 1.37 -4.92 - - -6.29 - 0.22 1.29 - - 1.4 - -1.17 -2.31 - 3.81 - - 4.34 -7.09 - - -6.21 -7.96
- - - - - - - - - - - - - - - - - - - - -0.04 - - - - -2.52 -4.19 - - 1.97 1.93 - -0.4 - - 3.39 - - 2.42 - - - 0.62 4.08
AT4G13080 (XTH1)
- - - - - - - - - - - - - - - - - - - - 0.98 - - - - -6.18 -6.25 -6.11 - - 2.08 - -0.36 - - 4.91 - - 2.81 -8.24 -7.14 - - -
- - - - - - - - - - - - - 1.41 - - - - -3.18 - -2.1 -2.15 - - - - -5.57 - - - 1.88 - -0.75 - -2.02 5.09 - - 1.04 - - - - -2.39
- - - - - - - - - - - - - - - - - - - - 0.89 0.78 - - -5.51 -5.86 1.18 3.44 -5.43 - -0.24 -4.17 -3.22 - - 3.86 - - 3.55 - - - - -4.71
- - -2.8 - - -3.55 - -4.73 - - - - - - -0.19 - - -4.01 -2.66 - 2.37 -1.63 - - - -3.35 -2.92 -1.67 - - -1.1 - -2.15 - - 4.12 - - 4.2 -4.82 - - - -4.67
1.36 0.2 -1.61 - - - -2.99 - - - - - - 0.99 - - -5.94 - - - 0.84 -2.45 - - - -3.05 -0.18 2.73 - - -0.88 - -3.17 - - 2.32 - - 3.05 -1.79 - 3.72 -3.73 -0.52
- - - - - - - - - - - - - - - -6.17 - -7.84 - - 1.67 -5.5 - - - - -0.95 1.93 - - -0.03 - -4.57 - -6.37 4.58 - - 3.49 - - - -6.79 -1.86
- - - - - - - - - - - - - - - - - - - - 2.63 -2.01 - - - - -0.72 2.42 - - -0.72 - -5.08 - - 3.73 - - 4.1 - - - - -0.91
AT4G30070 (LCR59)
- -3.78 -4.79 - - - - - - - - - - - - - - -4.78 - - 0.57 -0.1 - - -5.14 -3.08 0.5 3.77 - - 1.24 - -0.96 - - 3.73 - - 3.33 - - - - -
AT4G39000 (GH9B17)
-0.01 -1.14 -3.32 - - - - - - - - - - -6.18 - - - -8.05 - -7.21 -1.52 -0.99 -5.17 -5.29 -5.41 -0.1 0.85 3.72 -7.03 - -1.33 - -4.2 -6.92 - 4.28 - - 2.5 -6.6 -6.33 - -8.03 -5.12
- - - - - -5.33 - - - - - - - - - - - - - - 1.07 -2.54 - - - - 0.36 3.8 - - 2.19 - -0.61 -4.72 - 3.23 - - 3.55 -7.17 - - - -2.69
AT5G26650 (AGL36)
- - - - - - - - - - - - - - - -1.24 -3.03 -6.03 - - -2.66 - - - - - - - - - 1.43 - -1.76 - - 5.29 - - 0.32 - - - - -
- - - - - - - - - - - - - - - - - - - - 0.47 - - - - -6.15 -0.38 2.48 - - 2.15 - -0.58 -4.84 - 4.14 - - 3.75 - - - - -
AT5G33340 (CDR1)
-4.28 - - - - - - - - - - - - - - - - - - - 1.6 -0.24 - - - - 0.94 3.84 - - -0.17 -6.14 -1.47 -5.07 -2.59 1.95 - - 4.1 - - - - 0.42
AT5G39270 (EXP22)
- - - - - - - - - - - - - - - -4.5 - - - - 3.77 - - - - - -4.11 -3.33 - - -2.93 - - - - 3.09 - - 4.43 - - - - -
AT5G39290 (EXP26)
- - - - - - - - - - - - - - - - - - - - 2.62 - - - - - -4.52 -1.52 - - -2.27 - - - - 4.2 - - 4.2 - - - - -0.85
AT5G39300 (EXP25)
- - - - - - - - - - - - - - -6.12 - - -10.83 - - -0.18 - - - - - -8.02 -5.37 -7.01 - 1.98 - -1.02 - - 5.18 - - 1.3 -9.08 -8.33 - - -10.58
-7.44 - - - - - - -5.36 -6.87 -8.18 -7.52 - - -7.07 -6.12 -10.31 -9.24 -9.39 -7.03 - -1.59 -7.06 -7.03 -8.28 - -8.78 -3.54 -2.0 -5.5 -7.98 2.36 -6.88 0.68 -5.15 -1.82 5.11 - -8.17 0.72 -7.36 - - -8.35 -9.06
AT5G46540 (PGP7)
- - - -5.42 - - -6.5 - - - - - - -3.99 - -6.13 - - -5.94 -4.01 0.78 1.01 -0.62 -1.19 -0.14 -1.5 0.7 0.66 -0.69 - 1.18 - -0.94 - -0.84 4.54 - - 2.87 -7.14 - - - -6.44
- - - - - - - - - - - - - - - - -9.4 - - - -0.48 - -8.39 - - - -5.82 -3.28 - - 1.95 - -0.46 -7.54 -7.23 5.16 - - 1.49 -9.51 - - - -6.0
- - - - - - - - - - - - - - - - - - - - 2.8 - - - - - 3.18 - - - 2.43 - - - - 3.18 3.76 - - - - - - -
- - - - - - - - - - - - - - -1.95 - - - - - -0.07 1.82 - - - - 1.84 3.0 - - 0.02 - - - - 4.07 -2.26 - 3.23 - - - - -1.68
- - - - - - - - - - - - - - - - - - - - -4.91 - - 1.61 0.82 - - - - - 1.4 - -0.52 1.67 - 4.97 - - 0.43 -5.58 - - - -
-3.37 - - - - - - - - - - -3.39 - - - - -4.77 - - - 1.8 - - - - - -2.44 -1.48 - - 2.0 - -1.58 - - 4.84 - - 2.72 -4.75 - - - -3.01
-1.63 -3.41 -4.42 - - - - - - - - - - - - - - - - - -0.98 -2.25 - - - -3.32 -0.8 2.25 - -2.57 1.6 - -0.53 -4.43 -4.12 4.83 - - 2.19 -3.93 - - - -2.09
- -2.84 -4.4 -3.14 - -6.11 -6.81 -3.35 -2.98 -2.41 -1.56 -1.21 2.07 -4.71 -6.46 -8.91 -5.81 -5.23 -4.25 -4.42 1.53 -3.27 -5.67 -6.36 - -4.47 -2.58 -3.71 -6.36 - 1.69 -4.09 -1.36 0.29 -1.23 4.52 -6.77 -6.86 2.66 -6.16 -4.62 - -4.23 -3.76
AT5G60440 (AGL62)
-2.12 -0.1 -1.56 -2.21 -1.28 -2.65 -2.93 0.59 1.45 1.4 1.27 -0.71 1.43 -1.12 0.26 -2.5 -2.03 -1.46 0.76 -0.64 0.72 -1.25 -1.29 -1.58 -2.97 -2.17 -0.2 -1.12 -1.02 -5.21 -0.28 -3.03 -1.16 0.42 -2.89 3.64 -2.14 -4.44 1.31 -2.61 -4.58 -3.38 -0.9 -1.89
- - - - - - - - - - - - - - - - - - - - -2.12 -1.46 - - - - - -2.49 - - 1.48 - -1.05 - - 5.24 - - 0.86 - - - -2.75 -2.76

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.