- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.1 | -1.5 | -3.75 | -3.18 | -1.85 | -2.47 | -0.52 | 0.4 | -0.83 | -0.82 | -1.9 | -2.0 | -0.76 | -1.57 | -2.98 | -1.75 | - | - | -1.31 | 1.04 | 0.33 | 0.54 | 0.33 | 0.55 | 0.98 | -0.52 | 1.3 | 0.83 | 1.18 | 1.51 | 0.48 | 0.71 | 0.86 | 0.11 | 1.04 | 0.16 | 0.74 | 0.47 | 0.84 | 0.38 | 0.75 | -0.19 | -0.21 | -0.18 | -0.33 | -0.2 | 0.71 | -0.64 | -0.56 | -0.56 | -0.78 | -0.18 | -0.04 | -0.21 | -0.22 | -2.62 | |
| 0.74 | -3.96 | -1.74 | -1.49 | -3.4 | -2.35 | - | 0.14 | -1.19 | -0.63 | -1.75 | -2.98 | -0.7 | -2.03 | -2.97 | -0.48 | - | -3.93 | -0.55 | 1.23 | 0.16 | -0.54 | 0.77 | 0.38 | 0.78 | -0.96 | 1.15 | 1.09 | 1.0 | 0.97 | 0.47 | 0.95 | 1.08 | 0.86 | 1.23 | 0.94 | 0.87 | -0.12 | 0.87 | 0.76 | 0.52 | 0.36 | 0.03 | -0.47 | -0.36 | -0.46 | 0.14 | -1.7 | -2.05 | -0.19 | -0.24 | -0.61 | -0.05 | -0.07 | -0.3 | -4.04 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.