Heatmap: Cluster_64 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - 3.8 - - - - - - 1.29 - - 4.0 - - - - - - - - - - - - 1.23 - - - - 1.2 - - - -
Zm00001d005001 (GRMZM2G141081)
1.4 3.28 -0.64 2.07 2.59 -2.03 -4.46 -5.56 -4.35 -4.04 0.21 0.48 -3.97 -5.05 -1.13 -1.77 -6.94 -3.27 -4.27 -11.7 -8.56 - 1.96 -6.7 0.0 - 0.33 -2.16 - - -0.19 -2.86 -3.39 -1.3 -4.28 0.35 -0.78
Zm00001d005239 (GRMZM2G018046)
- - 0.19 3.87 2.19 - - - - - - -5.84 - - - -0.69 - - - 2.81 - 2.86 - -1.31 - - 0.21 - - - - - - - - -2.47 -
- - 0.82 - 3.5 - - - - - - 0.29 - - -2.36 0.82 0.25 - -1.11 - 0.2 - - - 2.01 - 1.67 2.43 - - - - 0.28 - -2.63 1.98 -
- - - - 2.04 1.24 - - - - - 0.73 - - - 1.91 - - - - - - - - 1.53 - -0.42 2.88 - - - -0.24 2.95 2.36 - -1.97 -2.68
Zm00001d006690 (GRMZM2G358139)
- - -2.91 - 2.06 -0.37 - - - -1.62 0.63 -2.03 - - -1.56 0.24 1.49 0.65 -1.74 0.44 - - - - - 0.51 -1.58 1.44 4.04 - -1.81 - -1.24 -4.24 - -2.1 -1.56
Zm00001d006911 (GRMZM2G328593)
-2.19 - - 3.98 3.16 -1.99 -3.1 - 0.74 -0.38 - -2.25 - -1.28 -1.59 -0.33 -2.78 - -3.2 - -3.16 - - - -2.51 1.94 - -1.76 - - - 0.31 -2.32 - -2.37 -1.42 -0.21
Zm00001d008588 (GRMZM2G094273)
1.45 1.32 1.77 2.73 1.97 -2.78 -3.54 -0.68 -1.37 -1.98 -2.92 -2.4 -0.56 -2.18 -1.68 -0.12 -0.46 1.6 -1.17 -1.39 -2.19 -0.65 -0.25 -0.53 -0.58 -2.53 -0.25 0.18 - -1.24 -0.0 -5.15 -0.9 -0.73 -2.31 -0.76 -0.48
-2.79 - 2.79 1.27 2.17 -0.48 - - - - - -2.77 - 3.15 - -4.05 -0.54 - -4.79 - -1.77 - - - -3.39 - 3.47 -0.22 - - - - - - -4.04 -3.1 -
Zm00001d009351 (GRMZM2G364369)
-0.77 -4.42 -0.94 4.5 3.54 - -7.18 - -3.31 - - -8.23 - -5.67 -8.18 -2.08 - -6.17 -5.6 -6.08 -4.61 -2.7 - -5.08 - - -0.27 - - - - - - - -8.74 -6.69 -3.54
-3.43 -2.75 -4.95 1.76 2.51 -1.82 0.06 -3.16 -1.39 -0.6 -3.35 -0.47 0.57 1.39 -0.53 1.15 -0.68 -1.35 0.59 -3.88 0.04 -0.02 1.34 -0.79 -0.66 -1.82 -2.04 -0.88 - -0.77 -0.02 0.15 0.26 -1.57 -4.82 -0.23 1.48
3.96 3.82 - - 2.87 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Zm00001d011099 (GRMZM2G098031)
-6.88 - 0.12 3.09 1.82 1.99 1.77 0.41 -1.88 0.2 0.71 0.43 -5.09 -1.86 0.01 -1.66 -7.32 -4.05 -6.55 -10.48 -4.93 -3.12 2.46 -5.45 -2.5 -5.52 -1.03 -3.14 - -5.12 -4.13 -3.34 -5.59 -4.1 -5.39 0.8 -0.89
Zm00001d011610 (GRMZM2G077054)
-1.58 -0.09 0.31 3.16 1.67 -0.62 0.22 -0.82 -2.53 -1.5 0.55 -0.69 -2.99 -2.59 -1.86 -1.27 -0.32 -0.26 0.95 -2.82 -2.87 -1.48 0.21 -1.04 -1.72 -0.96 1.87 0.06 - -0.11 -0.15 -2.4 -0.83 -0.51 -1.91 -0.61 -0.22
Zm00001d011965 (GRMZM2G134256)
-0.33 -0.33 0.3 2.32 1.29 -0.61 -0.03 -0.44 -0.66 -0.44 -1.52 0.08 -0.39 0.06 -1.15 -0.39 0.4 0.16 0.13 -6.44 -1.34 0.82 0.02 -0.87 0.71 0.53 0.97 -0.35 -2.28 -0.58 0.25 -4.03 -1.44 -0.46 -0.14 -0.37 -0.71
- - - - 3.27 2.31 - - - - - -4.71 - - - 2.54 - - - - - - - -0.63 -1.02 - - - - 2.93 2.96 - - - - - -
-3.77 - -0.35 2.49 4.01 - -2.81 -1.01 -0.52 - -0.4 -3.37 - - -1.21 -0.83 - - 2.25 -5.31 - - - - -4.43 - - - - - - - - - - -0.58 2.51
- - - - 3.15 - - - - - - 0.3 - - - 1.97 - - 0.87 - - 2.72 - - - - - 0.98 - - - - 0.22 - 2.48 0.16 2.25
- - - - 1.57 -2.18 - - - - - -6.94 - 3.6 - -0.57 - - -2.3 4.12 -1.25 - - - - - - -5.05 - 0.85 - - - - -3.38 -0.88 -0.91
- - -3.48 - 2.19 - 3.38 - - - 0.39 -0.34 - - - 1.49 -2.93 - 3.03 - - - - - -4.07 - - -1.72 1.21 2.38 -0.86 - -3.41 - -6.05 -2.18 -
Zm00001d017932 (GRMZM2G044408)
-1.4 -0.04 -1.9 3.09 1.9 -3.56 -6.05 -2.6 -5.4 -4.59 -2.34 -1.53 -0.9 0.6 -2.47 -0.02 -0.77 -1.25 0.24 - 0.35 -2.69 -1.12 -1.02 -0.74 -2.14 -0.35 -0.51 2.87 0.58 -2.28 -0.85 -2.33 -1.55 0.45 -1.43 -1.62
Zm00001d018161 (GRMZM2G102959)
-6.04 -6.53 -5.3 3.15 2.23 1.0 1.92 0.32 0.1 0.2 -0.43 0.83 0.11 -0.74 -0.61 -0.24 -5.56 -4.36 -4.58 -7.94 -3.72 -3.61 -0.65 -4.55 -2.98 -5.5 0.07 -1.14 -2.12 -6.18 1.23 -3.64 -8.19 -3.43 -5.17 -0.59 1.24
Zm00001d018206 (GRMZM5G878558)
-8.98 -5.03 -5.27 2.34 1.97 -0.36 -0.67 2.06 0.05 0.76 1.66 0.87 -0.34 -2.68 -0.79 2.32 0.1 -2.69 -8.09 -7.02 -1.88 -0.89 0.64 -1.52 -2.11 - -1.61 -5.55 -0.8 -6.56 -1.6 -5.09 -6.69 -6.27 -1.7 0.45 -0.11
Zm00001d019048 (GRMZM2G146940)
0.67 0.62 0.3 0.31 1.09 -0.62 0.26 -0.5 -1.41 -1.08 0.0 0.14 0.58 -0.44 -0.66 0.44 0.59 -0.1 0.32 -3.98 -0.0 0.35 -0.09 0.47 0.41 0.03 0.98 -0.26 -1.25 0.47 -0.16 -2.23 -2.0 -0.08 -0.84 -0.24 -0.88
Zm00001d019171 (GRMZM2G104559)
- - 0.73 3.03 3.96 -0.02 - -2.68 - - - - - - -1.38 -3.29 - -2.25 - 2.08 - - - 2.1 - - - -3.78 - - -3.06 - -4.96 - - -2.3 -0.19
Zm00001d019400 (GRMZM2G000221)
- - -2.9 -0.92 1.76 1.74 1.53 1.21 -1.06 -2.84 1.16 -0.53 - 3.37 -0.34 0.54 - -3.78 - -5.61 -8.63 - 2.33 - -1.87 -5.28 -3.91 -4.78 - - - - - -7.93 -2.07 -0.67 0.9
Zm00001d021048 (GRMZM2G077106)
0.64 0.38 -2.86 4.41 2.92 -2.6 - - - - - -3.5 - -2.05 - -2.09 - - -3.63 -5.37 -4.57 - - - - - -2.55 -2.43 - - - - 0.62 -1.36 -2.45 0.73 -2.64
Zm00001d021062 (GRMZM2G430052)
- - - 2.64 2.59 -0.54 0.51 -5.32 -1.26 -1.69 0.23 0.01 - -0.36 0.7 -0.87 -4.2 0.01 1.8 -8.3 1.46 -0.12 0.48 0.13 0.25 - -2.77 -1.72 -0.32 -1.33 -3.31 1.19 -3.58 -5.18 -3.49 -1.12 -2.38
- - -2.89 - 0.02 -2.49 - -2.12 - - - -9.11 - - - -2.2 -3.59 -2.53 -2.57 -2.34 -4.81 -1.8 - - -4.78 - - 0.54 2.58 3.35 3.25 - -0.01 - -1.49 -2.74 2.48
Zm00001d023543 (GRMZM2G443495)
-3.68 - -2.94 3.13 0.45 0.08 2.06 -6.55 -3.25 -1.69 -0.27 -0.7 -3.07 1.37 -3.3 1.34 -4.61 -4.75 0.01 -2.69 -2.37 -1.19 -0.67 -4.98 -2.84 0.45 1.09 1.27 - -3.0 -1.14 -2.01 -0.21 -3.16 -9.18 1.26 0.53
Zm00001d024633 (GRMZM5G828229)
0.11 0.69 0.01 1.72 1.44 -0.83 -0.82 0.44 0.65 0.56 -0.81 -0.49 0.61 0.85 0.28 0.53 0.26 -0.24 -0.48 -6.65 -0.63 0.19 -1.36 -0.01 0.05 -0.53 -0.15 -1.22 -2.66 0.29 -0.08 -5.05 -2.66 -1.41 -0.06 -0.1 -0.41
Zm00001d024868 (GRMZM2G039381)
- - -3.9 4.25 1.33 -4.91 -4.37 - -2.17 - - -2.3 - - -6.17 0.48 - -4.35 -0.36 - -3.76 - - - -5.29 0.15 1.85 -4.23 - - -5.31 - -3.65 -0.14 0.5 2.08 0.16
Zm00001d025015 (GRMZM2G177077)
-1.62 0.29 -0.56 2.66 2.18 -0.44 0.08 -0.54 -0.3 -0.35 0.08 -0.02 -0.56 -0.91 -0.96 -0.14 -0.28 -0.23 0.3 -3.62 -1.62 -0.95 0.51 -0.47 -1.06 -0.13 0.38 -0.87 -4.79 0.02 0.49 -3.5 -1.26 -0.87 -0.2 -0.22 -0.46
Zm00001d025436 (GRMZM2G136544)
- - - - 3.43 - - - - - - -6.61 - - - 1.02 - - - - - - - - - - - 2.15 - - - 4.13 0.66 -0.52 - - -
-1.44 -1.03 -1.28 2.07 2.37 -0.27 -0.33 -0.72 0.24 0.18 0.32 1.26 -2.01 -0.95 1.06 0.35 -0.53 -1.33 -3.12 -8.51 -0.36 -0.7 0.72 -0.89 -0.54 0.24 -0.79 -1.91 -0.65 -0.26 -0.48 0.52 -3.57 -2.0 -1.84 0.32 0.04
- - - - 2.91 - - - - - - 0.51 - - - 1.68 - - - - - - - - - - - - - - - - 4.64 - - - -
Zm00001d026186 (GRMZM2G311059)
-3.83 -0.47 -3.15 -1.31 0.52 - - 0.0 -4.18 -2.13 - -3.04 0.76 -1.2 -0.96 1.66 -0.55 1.97 1.98 -0.6 0.82 - - 1.65 0.15 - -0.17 0.48 - 2.7 0.21 - -1.04 -0.06 - -1.97 -2.16
-1.69 -1.79 0.45 - 2.0 -1.59 -0.13 - -1.39 - 1.51 0.51 - - 0.77 -4.52 - -1.07 -2.93 - - - 3.9 -1.04 -1.49 - - -1.35 - 1.35 -1.96 - - -0.88 - 1.44 -0.81
- - - - 2.5 4.26 - - - - - 0.22 - - - 0.66 - - - - - - - - - - - - - - - - - 2.88 - 1.05 -
Zm00001d028809 (GRMZM2G010545)
-2.14 -2.82 -0.78 2.5 1.61 -1.86 -1.59 -0.05 -2.02 -3.16 0.29 -0.49 -3.02 -0.32 -0.58 -0.83 0.27 -0.99 -1.77 -9.73 -1.44 -1.69 0.12 0.33 -0.22 -2.38 -0.27 -0.16 2.29 -1.55 0.37 1.95 -1.0 -0.56 -2.34 -0.42 -0.01
Zm00001d031659 (GRMZM2G043198)
1.02 0.95 0.24 1.42 1.04 1.18 0.51 0.45 0.28 0.27 -1.47 -0.11 0.31 -0.38 -0.19 -0.08 -0.02 -0.58 0.7 -3.68 -1.49 -0.22 -1.12 -0.71 -0.96 0.35 0.85 -0.75 -5.0 -1.35 -0.75 -2.59 -1.19 -0.91 -0.0 -0.51 -0.23
Zm00001d031734 (GRMZM2G379773)
- - -3.23 -0.49 0.65 1.97 1.23 -0.03 -3.2 -4.94 0.6 0.53 - 1.95 -0.84 0.66 2.82 -3.27 0.48 -3.45 -1.16 -1.41 - -1.81 0.21 1.15 - 0.1 - - -3.65 - 0.0 -1.19 -3.03 0.84 -0.62
Zm00001d033754 (GRMZM2G126049)
- - - - 4.83 - - - - - - 1.12 - - - -0.99 - - - - 1.14 - - - - - - 1.12 - - - - - - - 0.65 -
- - - - 3.04 - - - - - - 1.05 - - - 3.28 - - - 1.67 - - - - 1.97 - - -0.87 - - - - -0.85 - - - 3.13
- - - - 3.25 - - - - - - 1.51 - - - 0.38 - - - 1.46 3.64 - - - - - - 1.0 - - - - - - -0.13 2.38 -
Zm00001d034330 (GRMZM2G143324)
- - - - 3.28 - - - - - - -3.86 - - 0.65 1.52 2.09 -0.27 1.55 - 2.84 1.1 - - - - - -2.38 - - - - -2.09 - 2.24 -1.72 -
Zm00001d034345 (GRMZM2G058760)
-0.49 0.17 0.09 2.9 2.45 -1.62 -1.48 -0.78 -0.92 -1.44 -1.81 -0.56 0.59 -0.13 -0.9 0.64 -0.23 -1.04 -1.38 -4.54 -0.55 0.14 -0.9 -0.06 -0.13 -0.73 0.23 -0.8 -2.01 -0.38 0.29 -3.55 -1.38 -1.0 -0.76 -0.73 -0.36
Zm00001d035609 (GRMZM2G001205)
-1.43 -2.49 -4.0 4.04 4.05 -3.97 - -0.77 - - -2.38 -4.91 - -1.63 -9.39 -3.33 -5.87 -3.29 -2.0 - -2.88 -4.27 - -5.77 -6.17 -3.26 - -2.76 - - - - -4.01 -3.65 - -0.82 -0.86
- - - - 4.17 - - - - - - - - - 1.94 1.52 - - - 3.63 - - - - - - - - - - - - - - - - -
- - - - 5.21 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 0.19 2.86 0.78 - - - - - 0.74 - 2.37 -6.15 1.09 - 0.97 -1.74 0.94 2.63 -1.93 - - - 0.0 -0.91 1.58 - - - - -3.81 - -7.21 0.79 -0.15
Zm00001d037780 (GRMZM2G362557)
- - - - 5.1 - - - - - - 1.5 - - - - - - - - - - - - - - - - - - - - - - - - -
Zm00001d037943 (GRMZM2G340444)
-1.85 -5.08 -1.6 2.75 1.77 -1.51 -0.14 -0.97 -0.09 -2.16 2.0 0.97 -4.46 - 0.87 -1.13 -8.0 -1.75 -6.01 -6.89 -8.05 -4.83 1.11 -8.58 -1.79 -2.58 -0.7 -1.78 2.28 -1.57 -0.02 0.38 -2.55 -0.7 -2.44 0.34 0.5
Zm00001d038291 (GRMZM2G106190)
-0.65 -0.84 -1.29 1.88 1.92 -0.87 1.9 0.03 -0.62 -1.17 -2.4 0.4 0.21 0.86 -0.9 0.66 -0.61 -0.23 0.04 -2.8 -0.15 0.17 -1.85 0.07 -0.13 -0.71 -0.21 -0.02 -1.27 0.73 0.24 -1.37 -1.35 -1.29 -2.77 -0.98 -1.17
- - - - 4.95 - - - - - - - - - - 2.61 - - - - - - - - - - - - - - - - - - - - -
Zm00001d038718 (GRMZM2G168898)
-2.78 -4.43 -5.13 1.13 2.39 -0.11 0.81 0.51 1.74 0.95 0.37 1.52 -2.68 -0.89 0.14 0.68 -1.99 -4.58 -5.26 -11.17 -5.24 -6.8 -0.76 -5.5 -5.67 1.14 1.43 -1.33 - -3.57 2.02 - -2.39 -1.14 -2.69 -0.28 -1.39
Zm00001d040755 (GRMZM2G437490)
- - - 3.94 3.7 - - - - - -0.17 -2.82 - - -4.82 -5.64 - - - -5.6 - - 1.18 - -2.49 - 0.57 - - - - - -6.77 -4.05 -5.38 -0.91 1.61
Zm00001d042197 (GRMZM2G169884)
- - - 0.64 3.85 - - - - - - -5.52 - - - -1.79 - - - - - - 2.99 - - - - - - - - - - - -3.04 0.23 3.53
- - - - 2.47 - - - - - 3.89 -1.79 - - 0.1 2.64 - - 1.71 0.94 - - - - 0.99 - - - - - - - -0.71 - 0.31 - -
Zm00001d043416 (GRMZM2G127661)
- - - - 2.91 - 1.46 - - - - 0.61 - - -3.28 0.81 3.11 - -0.86 2.57 - - - - - - - -0.26 - - - - 1.02 - - -1.28 2.31
Zm00001d045022 (GRMZM2G127909)
-5.0 - -1.97 3.69 4.24 -4.08 -3.51 -3.2 -0.8 -4.65 -3.34 -6.67 - -5.18 -3.13 -3.71 - - - - -4.52 -3.98 - -6.43 -3.65 - - -6.61 - - - - -8.49 -5.47 - 0.09 1.29
- - - - 2.1 - - - - - - 1.49 - - - -0.31 - - - - - - - - - - - - - - - - - - 4.86 - -
- - - 4.31 2.22 - - - - - - -3.92 - - 0.37 -0.5 1.55 -1.27 1.41 0.31 - - - - 0.69 - - - - - - - - - 0.01 -0.84 -
- - -0.58 - 1.12 2.95 - - - - - -2.3 - - - 0.51 - - -1.86 - 1.34 - - - - - - -1.0 - 2.85 3.22 - - - 2.0 - -0.06
Zm00001d046138 (GRMZM2G023811)
- - - 1.53 5.04 -4.84 - - - - - -6.75 - - - -7.43 - - -8.49 - - - - - - - - - - - - - - - - -0.23 -1.47
- - - - 1.67 - - - - - - - - - - 1.43 - - - - - - - - - - - - - - - - - - 4.81 1.63 -
Zm00001d048306 (GRMZM2G065259)
- - - - 2.6 - -1.51 - - - - -5.91 -0.81 - - -1.48 -0.88 -2.01 -2.19 - - - 2.59 -0.72 - - -0.58 1.26 - - 3.93 - 1.6 -1.87 - -1.23 -
Zm00001d049187 (GRMZM2G440208)
-0.76 0.28 -1.11 2.1 1.38 -1.57 -0.09 0.07 -0.42 -0.61 -1.2 -0.38 0.83 -0.92 -0.67 -0.11 0.29 0.04 0.43 -6.58 0.09 0.49 -0.1 0.83 0.07 -1.83 -0.31 -0.32 -2.32 -0.4 1.16 -2.57 -0.77 -1.35 0.87 -0.92 -0.65
- - 0.93 - 3.74 - - - - - - -1.55 - - - 1.98 - 1.74 - -1.1 - - - - - - - - - - - - - - - - 3.77
- - - - 4.74 - - - - - - 3.36 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 2.42 - - - - - 0.69 0.44 - - 0.56 -1.11 0.8 -0.14 -0.31 2.21 - - - -1.09 1.41 2.27 - -3.68 - 2.28 - - -2.47 -2.23 2.43 - -
- - - - 5.2 - - - - - - - - - - -1.51 - - - - - - - - - - - - - - - - - - - - -
Zm00001d052831 (GRMZM2G143871)
- -2.84 1.37 3.19 4.3 -0.01 - - - - 0.86 -1.74 - - -4.79 -4.89 - - -3.32 -5.06 - - - - - - - - - - - - - - - 1.15 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.