Heatmap: Cluster_129 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d003840 (GRMZM2G134235)
-0.08 -1.32 -6.48 1.68 -0.01 -2.06 -4.2 -0.54 -1.93 -1.77 -5.71 -1.27 -0.31 1.48 0.6 -0.7 -1.48 -0.48 0.34 -9.93 1.99 1.88 - -0.72 1.39 -2.64 -1.66 0.19 -0.98 1.7 -0.46 - -2.65 0.25 -1.37 0.31 0.52
Zm00001d004574 (GRMZM2G325453)
- - - 4.43 -3.93 - - - - - - 0.3 - - - -3.64 - - - - - - - - - - - - - - 3.51 - - - -2.44 - 1.3
Zm00001d005523 (GRMZM2G368436)
- - - - -2.31 - - - - - - -1.03 - - - 0.28 4.54 1.47 1.22 - 0.79 - - - - - - - - - - - - - 1.59 -0.43 0.36
- - - - -2.14 - - - - - - - - - - 0.25 1.18 - 0.93 -0.17 - - - - - - - - - 4.28 - - - - 3.48 - -
Zm00001d006445 (GRMZM2G421682)
- - - - -1.2 - - - 2.85 - - 1.22 - - - 0.06 - 1.99 2.95 1.34 1.65 - - - - - - 0.8 - - - - 1.85 - -0.0 1.2 -
Zm00001d007519 (GRMZM2G353343)
- - - - -0.47 - - - - - - -1.2 - - 2.37 -0.78 - -0.2 1.43 3.74 - - - - 2.42 - - -0.51 - - - - - - 2.65 -0.26 -
- - - - -0.61 -0.11 - - - - - -4.94 - - - -1.26 -0.82 - -0.67 -0.27 1.69 2.16 - - - 4.59 - - - - - - - - 0.16 -3.62 -
-0.54 -1.85 -0.88 2.62 -0.07 -0.73 -2.2 -0.38 -2.89 -2.25 -4.03 -1.56 -3.59 - -1.73 -0.99 0.55 0.28 1.7 - 0.15 0.23 1.22 -0.32 -0.44 - -1.53 -1.46 - 2.28 -0.35 1.79 -1.83 -3.9 -0.49 0.44 -0.16
- - - - - - - - - 3.84 - -0.39 - 2.88 - 1.3 - - 2.36 1.52 - - - - - - - - - - - - -0.54 - 1.63 -1.44 -
0.26 -1.96 -6.43 1.83 -0.58 -8.47 -7.89 -3.12 -2.43 -2.53 -5.78 -1.66 -1.96 -0.16 0.17 -1.06 -1.74 0.63 0.84 - 1.71 2.09 -1.74 0.21 2.41 -0.38 -2.9 -1.38 1.49 -1.32 -3.04 -1.43 -4.71 -0.61 1.32 0.15 -0.96
- - - - -1.41 - - -0.39 - - - -5.72 - - - -2.79 -2.85 -0.84 -3.88 - 2.04 4.61 - 0.03 0.8 - - -2.75 - - - - - -5.21 1.74 -7.52 -3.94
- - - - - 0.68 - - - - - 0.27 - - - -0.79 - - - - - - - - - - - - - 4.99 - - - - - 0.93 -
- - - - -2.58 3.09 1.87 - - - 0.85 0.47 - - -0.94 -0.56 -0.98 - 1.41 - - 0.2 - - -0.95 -0.18 -0.78 -3.66 - 1.22 - 2.0 -3.38 - 2.0 1.29 -0.01
- - - 2.97 -0.96 1.53 -0.87 1.23 - - -0.48 -1.55 - - -5.71 -0.35 2.82 -2.35 0.09 - 1.03 - - - -1.2 2.83 - 0.43 - - - - -4.26 -1.44 -3.11 0.02 -2.29
-3.07 -3.17 -0.46 2.25 0.29 1.73 0.32 -0.72 -1.89 - -2.65 -0.66 - - -1.14 0.34 1.23 -0.63 0.74 - -2.6 -0.2 -0.73 -0.93 -0.86 0.5 - -2.07 - 2.38 -2.59 - -3.1 -1.38 0.82 1.02 1.78
Zm00001d014835 (GRMZM2G005028)
-1.2 1.59 - 3.76 1.43 - - - - - - -7.54 - 2.37 -3.01 -0.19 - 0.83 -0.19 0.45 -4.36 - - - 0.2 - - 0.76 - 0.3 -0.51 - - -1.55 -1.63 -0.65 -0.06
Zm00001d015331 (GRMZM2G167578)
- - -1.34 - -1.88 - - - - - - -3.25 3.34 - 0.65 -0.2 1.81 1.27 -1.21 - -2.08 1.34 - - 2.73 - - - - - - - - - 2.54 1.05 -
Zm00001d015440 (GRMZM2G027516)
- - - - -0.52 -0.29 -0.69 - - - - -1.11 - - - -1.28 2.83 -1.87 1.82 - -1.76 3.56 - - 1.67 - - -0.53 - - 0.18 - -3.53 - 0.17 2.25 -
- - - - -0.18 3.46 -2.28 1.68 -0.37 - - -2.23 - - -1.91 -2.51 -1.24 0.89 -2.97 - 0.58 - - -1.02 - - - -2.85 - 3.42 0.74 - - -2.16 0.14 1.0 -
Zm00001d015887 (GRMZM2G457231)
- - - - -0.59 1.82 0.06 -2.12 - - 1.1 -0.15 - - -2.51 -0.03 2.01 - 0.8 - -3.4 - - - -0.15 1.99 0.19 -2.32 - 3.56 -2.32 - -1.38 - -1.77 0.77 -0.2
Zm00001d015918 (GRMZM2G103864)
0.2 -0.42 -2.21 1.18 0.32 -1.02 0.03 0.94 -0.97 -0.97 -1.03 -0.2 -0.17 0.03 1.0 -1.05 -0.05 0.89 -0.18 -3.52 0.33 -0.61 -0.38 0.62 -0.56 -2.14 -0.3 -2.33 - -3.08 -0.54 -0.23 -0.78 -2.58 2.59 1.34 -1.85
Zm00001d016232 (GRMZM2G067984)
- - - - -2.29 2.66 2.69 - - - - 0.13 - - -0.04 -0.52 3.24 - -0.52 - - - - - - - - - - - - - - - 1.32 0.46 2.86
Zm00001d016271 (GRMZM5G891967)
-4.31 - -3.02 3.06 -0.17 -0.66 -2.06 0.6 -1.16 -2.18 -3.98 -0.56 -3.61 -4.86 0.15 -1.28 -3.94 -0.14 1.76 -7.09 0.34 1.39 -4.34 0.64 1.52 -1.01 - -4.44 - -1.02 -3.38 1.69 -3.68 -1.7 0.0 0.97 0.78
Zm00001d016992 (GRMZM2G077612)
2.15 0.82 0.24 1.21 2.05 -2.84 -0.75 -2.38 -2.87 -2.61 - -1.68 0.35 -1.74 -0.03 1.52 -6.38 -3.11 -9.38 -6.73 -6.07 -3.62 -5.15 -5.79 -2.34 -1.7 -1.12 1.06 2.94 -1.23 0.71 -1.5 -1.41 -0.55 -1.16 0.11 -2.5
Zm00001d018058 (GRMZM2G118366)
0.84 -3.33 0.08 -1.28 1.57 -0.32 -2.88 -1.12 -0.61 -0.38 -2.06 -0.52 -0.88 -0.04 0.71 0.56 -1.18 0.21 -0.33 -5.91 0.1 -0.18 1.08 -1.15 0.67 0.2 -1.5 1.35 - -0.23 1.23 -2.63 0.31 -1.79 1.37 0.88 -1.27
- - - - - - - - - - - -1.35 - - 1.74 -2.05 - - 3.15 - - - - - - - - - - - - - - - - 0.59 4.5
Zm00001d019900 (GRMZM2G348186)
- - - 2.53 -2.38 3.95 1.06 - - - - -0.78 - - - -0.24 2.22 - -2.33 -1.99 -0.47 - - 1.54 -1.53 - - -3.36 - - - - - - - 0.27 0.72
-0.62 - - 1.03 -2.16 -0.38 -2.08 -1.1 -4.3 - 0.17 -0.3 - -2.07 -0.44 1.74 0.07 0.73 3.04 - -0.26 0.69 - -2.57 0.6 1.42 -0.14 0.15 - -1.46 -2.54 - -3.42 -0.2 0.93 0.8 0.48
- - -2.71 - -2.0 2.74 1.67 1.94 - - -1.85 -1.0 - - -5.87 -1.18 1.66 - 0.72 -6.4 2.0 2.4 0.1 - -1.04 - -1.62 -2.33 - -0.97 -1.9 - -3.54 - 0.33 1.48 -0.77
Zm00001d027775 (GRMZM2G181497)
- - - - -0.37 0.68 - - - - - 1.24 - - -1.79 0.5 0.56 - 1.3 - -0.38 2.96 - -0.71 -0.55 - 2.44 -1.83 - - - - - - 3.47 - -
- - - 2.35 -0.62 1.9 -0.43 - - - - 0.54 - - -1.87 -0.96 2.66 - -1.14 - -1.27 1.25 - - -1.39 - - -3.7 - 2.26 - - - - 2.33 0.33 1.77
Zm00001d030228 (GRMZM5G892405)
- - - - -1.42 0.74 - - - - - -3.97 - - - -1.13 1.19 - -0.03 - 0.51 - - - - - - - - 2.84 - 3.93 0.32 - -2.24 -2.03 2.5
-2.7 - - 3.14 -0.32 -2.46 - -3.58 -3.03 - - -3.26 - - -6.51 -0.77 - -1.99 -1.48 - -0.4 3.23 - -3.6 -0.62 - - -2.4 - 3.68 -0.61 - -2.9 -4.7 -2.26 -2.84 -0.96
Zm00001d030676 (GRMZM2G007146)
-3.88 -5.05 -1.14 1.19 -0.06 1.1 0.38 0.72 -0.75 -0.55 0.06 0.13 -0.48 0.35 -0.62 -0.05 0.07 -0.62 0.12 -1.55 0.62 -0.41 2.04 0.36 -0.66 -0.52 -1.75 -1.74 1.23 -1.15 -0.29 0.64 -2.89 -1.88 -0.04 0.11 -0.52
- - - 2.45 -3.03 - 0.58 - - - - -6.66 - - -0.67 -1.73 0.8 1.59 -0.46 -3.22 0.91 4.06 - 1.8 0.25 - - - - - - - - - - -3.38 -
Zm00001d031274 (GRMZM2G361362)
- - - - -2.96 - - - - - - -3.63 - - - -3.35 - - 1.73 - - - - - - - - - - - - - 1.66 - 4.69 -2.33 2.08
Zm00001d032285 (GRMZM2G174310)
2.13 -3.17 -0.21 1.12 2.21 -3.1 -5.31 -0.74 -1.55 -1.83 -6.29 -2.23 -4.62 2.84 0.65 1.69 -4.78 -3.93 -0.37 -5.65 -1.57 - - -3.19 0.01 -0.26 -2.01 -1.09 -0.48 -2.4 1.29 - -3.82 -4.02 -0.09 0.66 0.43
- - 4.09 - 0.05 - - - - - - - - - - -0.48 - - - - - - - - - - - 1.06 - - 2.47 - -1.47 - 0.64 - 3.12
- - -3.76 2.19 0.66 1.85 - 1.4 - - - -2.92 - - 0.72 1.14 - - -0.26 -0.57 2.83 - - - -2.57 0.77 - 1.23 - - 0.76 - -1.18 - 1.97 0.45 -1.73
Zm00001d033901 (GRMZM2G481187)
- - - - -1.31 -0.38 - - - - - -1.43 - - - 0.07 2.39 - 0.2 - -1.81 2.3 - 0.56 - - - 0.43 - 3.97 - - -2.14 - 1.5 -0.83 -0.58
- - - - -1.01 0.27 0.16 -0.38 - - -2.27 -4.13 - - - -3.03 2.72 - 0.49 -3.31 - - 3.74 -0.25 - -0.69 - -0.02 1.94 - -0.33 - -4.14 - 1.66 -0.1 -1.5
- -0.79 - 0.68 -0.12 0.76 -3.2 - - - -1.15 -0.0 - - - -0.44 -0.05 -3.32 0.27 -3.94 -0.69 1.52 - -1.04 -0.58 - - -1.5 - 3.57 -0.2 - -3.12 -3.97 3.25 -2.83 -
-4.49 -2.82 -4.11 0.85 -0.68 0.61 -3.01 -0.65 - -6.52 0.51 -0.88 -4.49 -2.22 -0.72 -1.53 0.23 -3.45 1.63 -6.92 -4.24 2.81 - -4.96 0.49 1.23 - -1.92 0.69 -0.5 -1.34 - -2.88 -4.71 3.27 -1.16 -1.3
- - - - 0.14 - - - - - - -2.61 - - -1.05 -0.59 - - - - - - - - - - - - - - - 5.07 - - - -0.0 -
Zm00001d039297 (GRMZM2G083474)
3.19 2.49 -1.18 1.99 2.57 -4.54 -3.06 -1.71 -0.55 -1.79 -3.84 -1.78 -4.5 - 0.36 -2.5 -3.46 -0.01 -3.31 -1.15 -5.33 - -2.91 -1.34 -5.93 -0.47 1.72 -2.72 - - -1.92 - -5.36 -3.69 -1.01 0.06 -1.91
Zm00001d040779 (GRMZM2G360579)
- - - - - - - - - - - 5.06 - - - 1.9 - - - - - - - - - - - - - - - - - - - - -
Zm00001d041167 (GRMZM2G435385)
- - - - - - - - - - - 1.17 - - - -2.72 - - - - - - - - - 5.11 - - - - - - - - - - -
Zm00001d041213 (GRMZM2G035497)
- - - - - - - - - - - 4.91 - - - 0.78 - - - - - - - - - - - - - - - - - - 2.41 - -
Zm00001d041502 (GRMZM2G441670)
- - - - 0.01 - - - - - - -4.67 - - - 1.02 - - - - - - - - - - - 3.19 - - - - 0.73 - 4.53 - -
-3.05 - - 3.33 -0.68 -0.22 - - - - - -2.16 - -1.3 -2.18 -1.21 - - - - - - - - - - - -4.99 3.5 - -1.47 - -4.65 -0.53 3.35 0.45 -
Zm00001d042160 (GRMZM2G024778)
- - - - -0.53 - - 2.18 - - - -3.0 - - - 0.82 1.06 - - -0.95 0.9 - - - - 4.47 - - - - - - - 1.55 -1.81 - -
Zm00001d042800 (GRMZM2G053869)
-1.07 -1.22 0.15 -0.08 -0.41 1.55 -0.07 0.15 0.01 0.23 -5.89 -0.26 0.54 1.68 -0.04 0.78 -3.62 -0.37 2.09 -6.79 -2.06 -1.62 -0.8 -3.07 -2.66 -1.96 -1.69 -0.84 - -5.25 0.74 - -1.86 -2.03 2.04 1.26 0.63
Zm00001d044237 (GRMZM2G342693)
-6.09 -5.08 -3.79 2.62 -1.56 0.23 - -0.64 - - - -1.2 - - -8.08 -0.73 2.35 - 3.08 -7.5 -0.51 0.78 0.48 - -2.22 0.85 -1.62 -0.97 - - -0.35 - -1.26 - 1.95 -0.19 0.48
Zm00001d045304 (GRMZM2G352601)
1.7 -0.48 0.08 3.06 0.31 -0.27 -0.58 0.11 -0.44 -0.72 -2.53 -0.19 -2.63 -3.31 0.85 -1.93 -3.36 -0.94 0.27 -4.58 -0.57 -2.96 -0.75 -1.56 0.14 1.45 0.01 -0.29 0.1 -3.01 0.14 -2.88 -3.59 -2.39 -0.71 0.26 0.38
- - - - -1.29 -1.31 - - - - - -2.86 - - - -0.33 3.58 - 0.17 - -0.77 1.98 - - 1.34 - - 2.4 - - 1.78 - 1.53 - 0.64 0.98 -
- -3.53 - 3.07 -0.19 -0.18 - 2.09 - - - 0.08 - - -5.35 -0.72 - - -0.13 -4.75 -0.85 0.79 2.04 -1.62 -0.38 -1.79 -0.21 -6.26 - 2.43 0.46 - -1.57 - 0.57 -0.3 0.87
- - - - 1.64 - - - - - - 1.44 - - - 2.61 - - - - - - - - - - - - - - - - 3.68 - 3.0 2.07 -
- - - 3.02 -2.29 0.6 - - - - - -0.07 - - -1.69 -2.74 3.61 - - - - 1.54 - - - - - - - - 0.07 - - - 3.03 0.54 -
Zm00001d049657 (GRMZM2G363540)
2.01 1.69 -4.2 2.03 1.44 -3.01 -1.26 -2.53 0.1 -0.29 -2.05 -1.04 0.67 -2.58 1.38 -1.74 - -1.76 -3.06 2.54 -3.32 -3.84 -4.52 -8.95 -1.81 -5.79 1.54 -1.69 - -2.59 -1.59 -4.75 -3.24 -1.25 1.23 -0.34 -0.41
- -1.98 -1.49 1.97 0.48 -3.47 -0.24 0.24 -1.9 -1.72 1.12 -0.92 - 1.22 0.2 0.28 2.45 0.45 1.76 -1.41 -1.17 - - -0.99 0.5 -0.56 - 1.02 - - 0.45 - -0.29 0.76 -0.88 -0.61 -1.79
Zm00001d051314 (GRMZM2G180775)
0.54 -1.65 -1.77 -0.26 2.0 -5.88 -4.32 -1.59 -2.08 -2.84 -2.67 -1.58 -3.8 0.91 -0.64 1.27 -3.42 -2.8 -0.97 -2.55 -1.08 -4.17 - -3.34 -1.21 -1.56 -1.27 0.88 1.52 3.41 0.87 -0.47 -2.53 -0.83 0.16 0.02 -1.44
- - - - - - - - - - - - - - - 1.57 - - 4.62 2.69 - - - - - - - - - - - - 0.86 - 0.18 - -
Zm00001d051377 (GRMZM2G342649)
- - - - - - - 5.07 - - - - - - - -2.85 - - - 0.4 - - - - - - - - - - - - - - 0.92 - -
- - - 4.0 0.33 0.59 0.14 - - - - -1.61 - - - 0.13 - - - - 0.28 3.52 - - - - - -1.94 - - - - 1.27 - -2.43 -3.04 -
Zm00001d051505 (GRMZM2G146422)
-3.72 -4.93 -1.44 1.94 0.16 1.09 1.29 -0.07 0.02 -0.34 -0.33 0.38 -1.77 -0.24 0.16 0.26 -0.91 0.37 1.87 -1.22 1.3 -1.46 0.19 0.55 -0.63 -2.65 -0.8 -2.11 0.18 -1.45 -1.17 -1.76 -2.9 -2.97 -1.39 1.08 -0.47
- - - 4.48 -0.4 1.72 -1.4 - - - - -0.75 - - -2.24 -1.43 - - - - -0.26 - - - 0.13 - - -0.43 - - 1.92 - - - 1.28 -2.5 -
Zm00001d052770 (GRMZM2G335476)
- - -0.99 - -6.26 - - - - - - -1.52 -0.31 -1.45 -0.14 0.6 - -1.29 -3.67 -4.7 -5.1 -1.1 - - -0.69 -1.3 -0.01 -3.55 - 3.44 2.26 - - -5.44 3.36 0.24 1.22
-3.07 - 0.0 0.95 0.39 1.17 -2.88 - - - - -2.03 - - -0.67 0.36 -0.65 2.19 1.9 -3.53 -2.17 -0.48 - 0.69 1.04 -0.99 - -1.86 - 2.51 - - -5.15 -4.48 1.9 -0.05 1.68
- - - - - - - - - - - 1.87 - - - 1.67 - - 4.92 - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.