Heatmap: Cluster_61 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d002124 (GRMZM2G352359)
-7.3 - - - -7.69 - - - - - 0.03 -6.67 - - -10.38 -7.59 -5.77 5.12 -5.88 -0.52 -7.94 - - - - -4.55 -4.9 -7.1 -1.53 - -6.66 - - - - -9.38 -6.78
Zm00001d002365 (GRMZM2G416045)
- - - - -3.95 - -4.45 - - - - -1.4 - - -5.5 -6.7 - 4.78 -1.59 0.7 - - - - -5.16 - 0.64 -0.41 - - 0.82 - -5.34 1.36 - -1.6 -
Zm00001d002515 (GRMZM2G169553)
- - - - -11.43 - - - - - - -4.42 - - - -7.02 - 5.01 - -0.16 - - 1.89 - -4.79 - - - - - -5.04 - - -4.94 - -6.87 -
Zm00001d002679 (GRMZM2G027891)
- - - - -5.84 -0.13 -0.89 -0.61 -1.37 0.62 -0.65 -0.33 -4.33 -3.23 -0.4 -0.51 - 4.49 0.38 0.21 -2.62 -2.89 0.05 - -0.73 - -4.36 -2.22 -0.74 - - - -4.15 -2.35 -1.18 -0.12 -0.94
- - - - -6.1 - - - - - - -5.17 - - - -3.42 - 4.94 -3.19 2.47 - - - - - - - -3.05 - - - - - - - - -1.06
Zm00001d002732 (GRMZM2G132756)
- - -5.67 - -7.62 - - - - - - -5.48 - - - -6.86 - 5.04 -5.91 2.0 - - - - -6.81 - - - - - - -3.07 - - - -8.52 -
Zm00001d004720 (GRMZM2G443740)
- -5.8 -7.21 - -6.7 -1.98 - - - - -3.71 -8.2 - - -9.44 -13.27 - 5.09 - 1.36 - - - - - - - -9.23 - - - - - -6.95 - -7.87 -7.17
Zm00001d004846 (GRMZM2G348151)
- - - - -3.44 - - - -4.52 -4.09 - -4.47 - - -4.49 -3.75 - 4.69 -5.05 3.43 - - - - - - - - - - - - - - - -5.8 -4.71
Zm00001d005145 (GRMZM2G173419)
-5.58 - - - -6.87 1.32 -2.96 -1.85 -1.77 -0.92 -2.77 -0.85 - - -2.56 -7.62 -7.01 4.77 -2.82 1.67 - -3.29 - - -7.25 - - -1.64 - - - - -2.29 -3.88 - -0.86 -0.91
Zm00001d006063 (GRMZM2G422045)
-2.25 -4.39 -2.64 -1.57 -3.43 -2.12 -0.95 -2.85 -4.75 -4.57 -0.9 -1.46 -0.59 -1.46 -2.47 -0.39 -3.63 4.2 -1.92 1.97 -0.43 -1.57 0.24 -4.36 -2.92 - -1.06 -1.27 - 1.81 0.42 - -4.11 -3.48 -0.6 -1.46 -1.36
- - - - - - - - - - - - - - - - - 4.9 - 2.85 - - - - - - - - - - - - - - - - -
Zm00001d008347 (GRMZM2G155260)
-4.88 -4.98 - - -5.14 -4.13 - - - - - -5.25 - - -7.87 -9.46 - 5.12 -7.77 0.79 - - - - - - - - - - - - - - -7.03 -5.03 -2.52
Zm00001d010601 (GRMZM2G366851)
- - - - -5.85 - - - - - -3.43 -5.17 - - -7.0 -3.94 - 4.67 -3.77 3.37 -1.32 -3.44 - - - - - -4.34 - - - - -8.01 - - -4.28 -1.69
Zm00001d010629 (GRMZM2G138817)
-0.1 - - 1.44 0.7 - - - - - - -5.97 - - - -6.78 - 4.42 -3.72 1.12 - - - - - - - -6.25 2.38 - -4.74 - - -4.07 -4.89 -1.99 1.26
Zm00001d011040 (GRMZM2G075000)
- - - - - - - - - - - -8.16 -0.31 -2.15 - -1.16 - 4.73 0.88 2.72 -5.71 - - - - -1.54 - -3.96 - - - - -4.99 -3.01 - - -
Zm00001d011064 (GRMZM2G070978)
-6.77 -7.32 -7.2 - -6.82 -7.28 -5.89 -4.53 - -8.36 - -6.95 -4.74 -2.96 -5.2 -1.95 -3.11 4.76 -2.83 2.95 -1.61 -2.35 - -2.47 -2.34 -7.21 -6.89 -2.6 - -2.62 -3.2 - -5.15 -5.99 -6.5 -6.13 -6.85
-6.7 - - - -9.63 - - - - - - -9.03 - - - -10.15 - 4.8 -4.46 2.87 -7.82 - - - - - - -5.09 - - -7.1 0.7 -7.45 -5.24 - -7.09 -7.91
Zm00001d011774 (GRMZM2G438704)
- -5.83 -6.03 -2.56 -4.81 -2.69 -4.79 - -3.55 - - -5.19 - - -5.63 -4.39 -1.68 4.94 -5.15 2.29 -6.24 - - -5.49 -5.57 -4.1 -3.69 -3.03 - - - - -5.05 -4.79 -4.84 -3.19 -
Zm00001d012466 (GRMZM2G004440)
-3.61 -3.06 -5.29 - -2.79 - - - - - - -5.76 - - -3.76 -3.39 - 4.5 -0.36 2.37 -2.04 - - -4.89 - - - -2.77 2.86 - - - -3.41 -3.09 - -6.72 -
Zm00001d012521 (GRMZM2G130831)
- - - - -4.67 - - -4.55 - -6.43 - -4.37 -2.81 - -6.95 -4.55 - 4.66 -4.9 1.82 - - - - -6.37 - -3.96 -5.29 - - 2.46 - -3.76 1.01 - -6.75 -3.59
Zm00001d012676 (GRMZM2G153217)
- - -6.67 - -7.68 - -4.76 - - - - -7.66 - - - -5.54 - 5.05 -7.67 1.83 -6.43 - - - - - - -7.87 - - -3.28 - -8.06 -6.17 -9.91 -7.51 -3.05
Zm00001d015386 (GRMZM2G433908)
- -2.87 -4.23 - -1.82 - - - - -3.91 - -3.94 - - -2.63 -0.36 - 5.0 -1.15 -2.58 - - - - - - 1.14 -5.98 - - -4.21 - -3.54 - -1.42 -3.4 -
- - - - - - - - - - - -6.68 - - - - - 4.97 - 2.48 - - - - - - - - - - - - - - - - -
Zm00001d016259 (GRMZM2G312827)
- - - - -11.98 - - - - - - -9.56 - - - -13.45 - 4.75 -7.35 3.29 - -5.75 - - -7.39 -4.84 - - -2.11 - - - - - - - -5.55
Zm00001d017731 (GRMZM2G409286)
-5.78 - - - - - - - - - - -10.02 - - - -11.29 - 5.02 - 2.16 - - - - - - - - - - - - - - - - -
-1.67 -1.54 - -1.59 -2.17 -6.0 0.26 -2.94 -3.21 -5.71 - -5.39 - - -2.54 -6.53 -5.32 4.82 -2.96 2.26 - - -4.4 -5.22 -4.04 - - -4.55 - - - -0.93 -5.33 -3.42 -4.13 -3.67 -
Zm00001d018027 (GRMZM2G140635)
- - - -3.49 -7.43 - - - - - -6.88 -10.78 - - -9.34 -9.21 - 5.01 -5.44 2.15 - -6.17 - - - - -6.7 -9.65 - - -6.52 -4.38 -10.69 - -6.73 -6.04 -7.2
- - -4.89 - -3.41 -2.08 -4.78 -2.92 -2.17 -4.45 -2.66 -2.69 -2.65 -3.23 -2.71 -1.94 - 4.87 -4.5 2.46 -7.45 - -4.38 - -5.71 - - - - - - - -7.25 -6.52 -4.29 -2.97 -4.11
Zm00001d025022 (GRMZM2G390358)
- - - - - - - - - - - - - - - -12.87 - 5.03 -5.73 2.02 - -3.04 - - - - - -4.73 - - - - -6.2 -7.34 - - -
Zm00001d026135 (GRMZM2G090627)
- - - - -4.01 -1.88 -2.55 - - - -3.15 -2.92 - - -6.28 -3.71 - 4.64 -4.29 3.16 - - - - -3.61 - - -0.93 - - -4.83 - 0.22 -2.41 -8.45 -3.52 -2.0
Zm00001d026604 (GRMZM2G062844)
- - -0.46 - -7.45 -4.64 - - - - - -7.74 - - - -5.96 - 4.66 -3.47 3.0 - - - - -3.27 - - -4.03 -0.32 - -1.33 0.56 - -4.73 -6.12 -6.69 -5.75
Zm00001d026711 (GRMZM2G178062)
-5.94 - -1.69 - -5.39 - - - -3.64 - - -3.82 - - - -5.13 - 5.04 - 0.38 - -2.8 - - -2.19 - - - 0.83 - - - - - - -5.03 -
Zm00001d029568 (GRMZM2G072448)
- - - - -11.78 - - - - - - - - - - -13.18 - 5.21 -7.15 -9.16 - -5.28 - - - - - - - - - - -12.12 - - - -
Zm00001d030506 (GRMZM2G177461)
-5.7 -5.03 -6.18 - -5.3 -5.72 -5.94 - -8.31 -8.58 -2.54 -4.47 - - -7.26 -6.48 -5.89 4.7 -0.73 3.14 -7.34 -5.58 -2.34 -5.68 -4.53 -3.47 -7.11 -4.18 -1.81 -3.5 -3.03 -5.48 -4.91 -4.26 -7.77 -4.77 -3.38
- - - - -7.53 - - - - - - -7.86 -1.36 - -4.48 -5.97 -4.33 4.81 -3.18 3.01 -4.02 - - -4.1 -6.24 - - -3.05 - - - - -7.03 - - - -
-2.11 -4.38 - -2.82 -4.03 - -7.18 -4.41 - - - -8.83 - - -6.6 -4.59 - 5.03 -3.05 1.7 -5.63 -3.41 - -8.09 - -3.12 -6.06 -3.11 - - - - -3.48 - -7.02 -6.41 -8.15
Zm00001d031341 (GRMZM2G118919)
-2.05 -5.76 - -4.04 -3.59 - -5.82 -3.3 - - -6.87 -6.63 -6.12 -5.4 -5.76 -4.27 -8.56 4.98 -3.68 1.78 -6.13 -2.63 - -7.58 -8.8 -0.49 -4.82 -2.58 - - -8.82 - -3.01 - -5.3 -6.0 -4.79
Zm00001d032104 (GRMZM2G048475)
-6.02 -6.42 -3.27 -1.88 -4.94 -0.77 -4.67 -1.96 -2.31 -1.84 -4.61 -1.31 -5.96 -4.24 -1.63 -3.41 -7.92 4.68 -0.95 2.37 -1.86 -3.42 - -7.52 -1.7 -1.17 -6.53 -3.33 - - -3.23 -1.72 -3.19 -1.81 -3.2 -1.68 -1.21
Zm00001d032256 (GRMZM2G485898)
- -3.43 -5.7 -1.47 -3.58 -2.38 -1.66 -3.86 -4.14 -2.03 -3.99 -3.67 - - -5.08 -3.81 - 5.0 -2.19 1.35 -5.21 -5.19 -2.87 -7.68 -2.67 -5.57 - -6.72 - - -5.7 - -5.6 -6.67 -8.74 -3.93 -3.78
Zm00001d033188 (GRMZM2G058244)
- - -7.16 -3.21 -1.35 -3.89 -4.32 - - - -5.94 -3.46 -5.29 -3.17 -5.02 -2.51 -1.97 4.9 -1.75 1.61 -2.74 -0.84 -0.81 -5.21 -3.18 - -4.73 -5.01 -1.7 -2.27 -3.73 -4.23 -4.44 -5.66 - -2.93 -3.18
Zm00001d033988 (GRMZM2G074395)
-6.19 - -4.6 - -6.71 0.99 0.84 -1.69 -0.44 -0.59 0.83 0.37 - - 0.59 -3.59 - 4.18 1.43 0.16 -4.89 - 1.77 -7.02 -1.93 - - -10.31 - - - - - - -9.07 -0.35 -1.45
- - - - - - - - - - - - - - - - - 4.96 - 2.58 - - - - - - - - - - - - - - - - -
Zm00001d036931 (GRMZM2G416733)
- - - - -6.85 - -4.43 - - - - -8.48 - - - -9.08 - 4.73 -3.63 2.76 - - - - - - - - 1.8 - - - - - - - -
Zm00001d037643 (GRMZM2G043340)
- - - - -6.1 -3.24 -4.21 -8.86 -2.98 -2.52 - -4.54 - -6.6 -4.93 -6.27 - 5.12 -10.18 0.54 -7.23 - - - -7.95 - - -11.17 - -5.41 - - - - -9.34 -2.99 -5.63
Zm00001d039224 (GRMZM2G425148)
- - - - - -5.68 -2.63 - - - - -1.09 - -2.96 -3.91 -7.07 - 4.98 - 1.84 -5.51 -2.73 - - -3.34 - - - - - - - - - - -5.24 -0.52
Zm00001d040269 (GRMZM2G180071)
-5.35 - -4.02 - -2.98 -5.61 -3.44 -4.69 - -4.32 - -2.86 - -0.61 -3.54 -1.16 - 4.94 -0.47 0.24 -1.89 - -4.01 -5.78 -6.84 - -2.55 -2.48 - - -1.54 - -3.13 -6.0 -6.95 -1.31 0.19
Zm00001d040609 (GRMZM2G007685)
-7.03 - - - -12.38 - - - - - - -10.81 - - - -13.98 - 4.82 -9.53 3.1 - -6.74 - - -10.38 -4.55 - - - - -9.04 - - - - - -
Zm00001d041198 (GRMZM2G457523)
- - - - - - - - - - - -10.18 - - - -3.18 - 4.72 -2.12 3.26 -4.18 - - - -1.04 - - -5.51 - - - - -6.46 -5.1 - -6.17 -4.15
Zm00001d041944 (GRMZM2G062587)
- -4.08 -5.97 - -5.83 - - - - - - -5.52 -3.61 -3.84 -8.67 -1.81 - 5.06 -2.03 1.28 -6.18 -3.65 - - -4.76 - -4.18 -6.13 - - -4.32 - - -4.42 -3.92 -6.48 -
Zm00001d042651 (GRMZM2G332258)
-6.75 - - - -4.7 -6.92 - - - - -5.33 -4.19 -3.58 -1.24 -5.37 -2.22 -0.31 4.93 -0.81 1.17 -1.81 -3.62 - -2.23 -3.87 - - -2.54 - -0.26 - - -3.13 -2.43 - -3.72 -4.65
Zm00001d044675 (GRMZM2G079574)
-10.34 -7.9 -7.6 - -9.79 - - - - - - -10.69 -7.38 - - -7.65 - 4.78 -6.09 3.12 -9.67 -3.47 - -11.1 -10.13 -3.53 - -6.21 -0.78 - -6.71 - -9.27 -5.64 - -9.17 -
Zm00001d046319 (GRMZM2G080907)
- - - - - -6.21 - - - - - -9.54 - - -9.74 -9.98 -10.56 5.15 -9.77 0.4 -10.32 -3.98 - - - - - - - - - - -12.05 - - -8.37 -
Zm00001d046482 (GRMZM2G095441)
- - - - - - - - - - - -7.52 - - - -9.48 - 5.03 -6.08 2.04 - - - - - - -2.68 - - - - - -7.83 - - - -
- - - - -7.01 -3.44 -6.99 - - - - -6.99 - - - -8.27 - 5.16 -5.71 0.08 - -4.26 - - -7.77 -5.1 - - - - - - - - -9.33 -7.72 -
Zm00001d050149 (GRMZM2G399421)
- - -7.48 - -6.74 -8.61 - -3.66 - - - -10.8 - -7.16 -6.12 -6.26 - 5.16 -6.48 -0.21 - -4.98 - - -6.66 - - -7.21 - - -2.94 - -5.48 -7.88 -4.26 -7.76 -6.18
Zm00001d051376 (GRMZM2G342691)
- - - - - - - - - - - -3.32 - - - -8.84 - 4.76 -0.78 3.18 - -3.79 - - - -3.05 - - - - - - - - - - -
Zm00001d051703 (GRMZM2G427319)
- - 0.72 - -2.77 - - - - - - -6.98 - -3.13 -1.98 -1.91 -3.92 4.53 -2.85 2.7 -4.55 -5.09 - -1.67 -6.78 1.7 -2.16 -4.74 -1.12 -2.75 -5.56 - -4.82 -4.24 -7.63 -4.3 -
Zm00001d052856 (GRMZM2G317270)
- - - - -4.7 - - -5.09 - - - -6.87 -4.34 -2.34 - -1.75 -3.12 4.81 -0.72 1.58 0.66 -0.96 - -2.05 -2.0 - -1.89 -1.96 - - -1.1 - -2.73 -0.28 -8.56 -5.07 -5.8
Zm00001d053850 (GRMZM2G420010)
- - - - -7.24 - - - - - - -6.45 - - - -4.85 - 4.67 -2.27 2.91 - - 1.84 -3.15 -5.11 - - -4.29 - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.