- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -1.68 | -3.79 | 1.18 | -0.6 | 0.31 | 1.15 | 1.4 | -0.33 | -0.94 | -0.22 | 0.0 | -1.41 | -0.59 | -4.06 | -2.23 | 3.29 | - | 2.12 | -0.24 | 1.29 | -0.59 | -1.62 | -0.27 | 0.54 | 0.7 | 0.52 | 0.99 | 0.47 | 1.02 | 1.12 | -1.86 | -3.07 | -2.97 | -1.07 | -3.21 | -1.57 | -3.31 | -3.18 | -2.98 | -2.01 | -1.46 | -1.81 | -0.49 | -1.59 | -0.9 | -1.19 | -0.33 | -0.97 | -0.43 | -0.87 | -0.7 | -1.02 | -0.6 | -0.41 | -0.94 | -1.24 | |
| -1.08 | -0.37 | -0.8 | -0.67 | -0.19 | -0.33 | 0.85 | 0.12 | -0.91 | 0.22 | -0.06 | -1.18 | -0.81 | -1.3 | -1.57 | 3.04 | - | 1.73 | 0.46 | 0.82 | 0.41 | 0.98 | 0.28 | 1.14 | 1.33 | 0.12 | 1.08 | 0.02 | 0.68 | 0.77 | -0.55 | -1.11 | -0.94 | -1.03 | -0.62 | -1.22 | -1.29 | -0.74 | -0.48 | -0.95 | -1.29 | -2.53 | -2.16 | -3.81 | -5.2 | 0.14 | 1.63 | -0.88 | -0.92 | -1.57 | -3.26 | -3.76 | -1.72 | -0.99 | -4.12 | -3.37 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.