- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2.54 | -4.81 | - | -5.18 | -2.49 | 0.23 | - | -1.56 | -4.26 | -4.23 | 3.11 | 1.41 | 1.69 | 1.25 | 0.54 | - | - | - | -3.05 | 1.38 | 0.15 | 0.85 | -1.02 | 0.77 | -0.13 | 0.77 | 0.29 | 1.36 | 1.1 | 1.54 | -0.91 | -1.28 | -0.87 | -0.78 | -0.46 | -0.48 | -1.1 | -0.32 | -0.64 | -1.26 | -2.34 | -2.47 | -0.54 | -0.72 | -3.68 | -0.42 | 0.73 | -2.01 | -2.06 | -5.68 | -5.77 | -4.09 | - | -5.62 | -5.6 | -3.34 | |
| -4.68 | -1.47 | -4.57 | -4.05 | - | -1.11 | - | -2.95 | -3.52 | -1.05 | 3.55 | 1.43 | 1.3 | 0.37 | -1.11 | -1.89 | - | -2.18 | -0.66 | 1.41 | -0.88 | -2.81 | -3.0 | - | -0.17 | -0.32 | 1.43 | 1.73 | 0.69 | 1.04 | 0.29 | 0.55 | 0.49 | 0.59 | 0.64 | 0.96 | 1.14 | 0.14 | 0.07 | 0.06 | -0.23 | 0.31 | -2.36 | -3.03 | -2.07 | -0.32 | -2.91 | -2.75 | -2.02 | -2.69 | -1.88 | -2.5 | -2.61 | -2.76 | -2.07 | -2.58 | |
| -4.73 | -2.03 | -3.03 | -1.23 | -1.32 | 0.35 | -0.4 | 0.13 | -2.41 | 0.04 | 3.33 | 1.82 | 1.09 | -0.22 | -0.13 | -1.24 | - | -3.22 | 0.36 | 1.22 | -2.04 | -1.36 | - | -3.75 | -0.28 | -0.14 | 1.57 | 2.02 | 1.35 | 1.83 | -0.11 | 0.07 | -0.09 | -0.22 | 0.2 | 0.63 | 0.71 | -1.05 | -0.3 | -1.11 | -0.48 | -0.22 | -2.19 | -3.03 | -2.69 | -3.49 | -2.22 | -2.48 | -2.5 | -4.84 | -5.68 | -5.66 | -3.83 | -3.37 | -3.58 | -1.82 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.