- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.68 | -2.62 | -4.51 | -1.89 | -3.63 | -2.13 | -1.6 | -4.05 | -0.25 | 1.19 | - | - | -2.94 | -6.01 | -7.32 | -0.81 | - | -0.36 | 0.79 | -0.3 | -0.47 | 0.81 | 0.06 | 0.59 | 0.23 | -1.26 | -0.63 | -0.61 | -1.23 | -1.51 | -1.0 | -0.8 | -1.46 | -1.02 | -1.14 | -1.27 | -1.63 | -1.42 | -1.07 | -0.8 | -0.45 | -2.15 | 2.38 | 1.38 | 1.75 | -0.19 | 0.57 | -0.65 | -0.31 | -0.01 | 1.83 | 1.81 | 0.73 | 0.39 | 0.64 | 2.09 | |
| 1.15 | 0.64 | -3.86 | -1.51 | -4.85 | -4.81 | -3.8 | -0.23 | 0.05 | 0.66 | -3.76 | -2.43 | -2.67 | -1.91 | -2.78 | -2.57 | - | -2.62 | 0.74 | -1.31 | 0.4 | 0.3 | 0.89 | 0.47 | 0.18 | -0.72 | -0.03 | -0.53 | -0.2 | -0.74 | 0.0 | -0.65 | -0.32 | -0.43 | -0.54 | -0.31 | -0.82 | -0.27 | -0.58 | -0.02 | 0.21 | -1.01 | 1.84 | 0.6 | 1.7 | 0.53 | 0.58 | -0.6 | -0.07 | -1.05 | 0.92 | 1.56 | 0.15 | -0.38 | 0.62 | 1.71 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.