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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.04 | -0.65 | - | -1.5 | -4.68 | - | - | -0.82 | -1.63 | -2.11 | - | -3.29 | -1.34 | 0.87 | -1.37 | -0.76 | - | -4.21 | -1.69 | -2.91 | 2.74 | -0.74 | 2.64 | 0.6 | -4.2 | 3.34 | -3.04 | -4.15 | -4.28 | -1.87 | -0.76 | -0.37 | -0.84 | 0.22 | -0.4 | -0.18 | -1.63 | 0.3 | -1.1 | -0.13 | -1.38 | -3.01 | 1.41 | 1.41 | 0.67 | 1.39 | 0.58 | 0.31 | 0.75 | -2.9 | -5.2 | -3.06 | -3.47 | -1.39 | -2.67 | -1.46 | |
| - | - | - | - | -1.91 | 0.65 | - | - | -3.56 | -0.28 | - | - | - | - | - | - | - | - | 2.67 | - | - | - | - | - | - | 3.78 | - | - | 0.68 | - | - | - | -1.02 | - | - | - | -0.8 | - | - | - | - | - | -2.25 | - | - | - | - | - | - | 0.22 | 1.16 | 3.52 | 1.0 | 1.02 | 3.5 | - | |
| - | - | - | - | - | - | - | - | - | 4.01 | - | - | - | - | - | - | - | - | 0.93 | - | - | 1.89 | - | - | - | 4.65 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.34 | 2.99 | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | 1.81 | - | - | - | - | - | - | 2.48 | - | - | - | - | - | 5.12 | - | - | - | - | - | - | - | 3.4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.76 | |
| - | - | - | - | 2.52 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.3 | 3.36 | - | - | 3.24 | - | 3.74 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.95 | - | - | 2.44 | - | - | - | - | - | |
| -4.19 | 3.78 | - | -4.47 | -5.62 | -5.9 | - | -5.23 | -1.43 | -1.22 | -2.47 | -4.74 | -3.96 | -3.51 | -4.48 | - | - | - | -2.29 | -1.89 | -0.18 | -1.28 | 0.79 | -3.26 | -1.81 | 1.75 | 0.49 | -0.62 | -1.17 | -0.56 | -2.04 | -2.56 | -2.99 | -1.67 | -1.03 | -1.3 | -1.07 | -1.04 | -1.42 | -1.56 | -2.05 | -1.59 | 0.97 | 0.11 | 2.88 | 2.18 | -1.59 | -0.81 | -1.1 | 0.49 | -0.81 | 0.65 | 0.42 | 1.12 | 1.37 | -0.97 | |
| - | - | - | - | - | - | - | - | 0.46 | - | - | - | - | - | - | - | - | - | -3.41 | - | -1.13 | -2.15 | -1.13 | - | - | 4.91 | - | - | - | - | -3.24 | - | - | - | -2.37 | - | - | - | - | - | - | -1.84 | 0.62 | -1.75 | 0.26 | 1.83 | - | 2.91 | 2.78 | - | - | - | -2.3 | - | - | 0.7 | |
| 2.15 | -0.77 | - | - | - | - | - | 0.49 | - | -0.55 | - | -0.4 | 0.61 | - | 0.53 | - | - | - | -2.12 | -1.62 | -0.56 | 1.4 | - | - | - | 2.9 | -0.57 | - | - | - | 0.53 | -0.56 | -0.64 | -1.25 | 0.12 | - | -0.29 | -0.92 | - | 0.13 | - | -0.08 | - | - | - | 1.33 | 2.11 | - | - | 1.26 | 1.17 | 2.1 | 1.4 | 1.06 | 2.29 | -3.09 | |
MA_119256g0010 (PKS18) | - | 3.04 | - | - | - | - | -1.39 | -3.79 | -3.04 | 0.91 | 0.83 | 1.18 | 2.08 | - | -0.93 | -0.47 | - | -0.34 | 0.97 | -2.97 | 1.63 | -2.89 | 1.74 | -1.87 | -3.02 | 2.39 | -1.94 | - | - | -2.02 | -0.73 | 0.45 | -0.05 | -0.54 | -2.11 | -1.09 | -0.6 | -0.71 | -1.2 | 0.38 | -0.49 | -0.59 | -3.36 | -2.21 | -1.25 | 3.13 | 0.27 | -1.38 | -1.49 | - | - | - | -3.41 | - | - | -5.58 |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5.56 | - | - | - | - | - | - | - | 3.13 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| -2.32 | 0.43 | -0.47 | -3.3 | -0.51 | -1.01 | - | -1.96 | -3.58 | -3.63 | 0.21 | 0.83 | 1.01 | -0.51 | 0.93 | - | - | - | -1.24 | -1.74 | 1.9 | -1.64 | 2.97 | -0.81 | -1.04 | 3.31 | -0.87 | -1.19 | 0.14 | -1.09 | -3.38 | -4.87 | -3.27 | -2.8 | -5.45 | -4.2 | -4.52 | -2.86 | -3.84 | -3.95 | -1.63 | -5.36 | 0.87 | 0.96 | -1.33 | 3.13 | 0.19 | 0.57 | 0.06 | -6.6 | -4.81 | -6.51 | - | -2.86 | -4.74 | -1.22 | |
MA_13598g0010 (CVL1) | 1.21 | 4.03 | - | -1.59 | - | - | - | 1.23 | -2.58 | 0.41 | - | 2.24 | 2.25 | - | 1.2 | - | - | - | 0.56 | -0.49 | 0.57 | -1.05 | - | - | -1.19 | 1.93 | - | -0.13 | - | 0.83 | -2.19 | -2.16 | -1.03 | - | - | - | -1.74 | -0.24 | - | -1.75 | -2.0 | -1.99 | -3.19 | -0.47 | -1.1 | -1.09 | 0.65 | -1.6 | -0.78 | -1.25 | -2.18 | - | - | -2.21 | - | 1.24 |
MA_180274g0020 (PK5) | - | - | - | - | - | - | - | - | 0.7 | 1.52 | - | 3.7 | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.11 | - | - | - | 3.34 | - | - | - | - | - | - | - | 2.39 | 2.57 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| - | - | - | - | - | - | - | - | -3.09 | 1.89 | - | - | -0.51 | - | -0.87 | - | - | - | - | - | - | - | - | - | - | 3.6 | - | - | - | - | - | - | -0.74 | - | - | - | - | - | - | - | - | - | - | - | -0.74 | - | - | -1.7 | -3.23 | 1.4 | 1.88 | 3.3 | 0.81 | 0.76 | 4.14 | - | |
| - | -1.83 | - | - | - | - | - | -1.31 | -1.06 | 0.81 | - | - | - | -3.13 | - | - | - | - | 1.86 | 0.84 | 1.18 | -2.41 | 1.18 | 2.15 | -1.8 | 1.87 | - | - | 0.45 | 0.8 | 0.43 | 0.36 | 0.13 | 1.11 | 1.48 | 0.1 | 0.52 | 1.24 | 1.24 | 1.83 | -1.04 | 0.42 | -0.82 | -1.33 | -1.68 | -0.17 | -1.54 | -1.53 | -1.24 | -0.05 | -0.92 | -0.54 | 0.54 | 0.12 | -1.43 | 0.75 | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | -2.2 | - | - | - | -4.65 | 0.61 | - | 0.39 | -1.13 | - | -0.57 | - | - | - | -0.72 | - | - | - | - | - | - | 2.4 | - | 0.53 | - | - | 0.3 | -0.39 | 0.89 | 2.53 | 2.21 | 0.82 | -1.08 | 2.29 | 1.32 | 1.97 | 1.12 | -0.19 | - | - | -1.44 | - | - | -3.95 | - | 1.06 | 0.23 | 1.61 | 1.27 | 1.28 | 0.72 | -1.33 | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | 0.56 | 1.52 | 1.24 | - | - | - | 1.76 | - | 2.22 | 1.23 | - | 0.79 | - | - | 3.44 | 0.88 | -0.2 | - | 0.02 | - | - | - | 2.23 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.55 | - | - | - | 0.29 | 1.33 | 0.11 | 1.98 | 1.8 | - | 2.09 | - | |
| - | - | 4.59 | - | - | - | - | - | - | - | - | - | - | - | 2.37 | - | - | - | 0.9 | - | - | - | - | - | - | 4.2 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.71 | - | - | - | - | - | - | - | - | - | - | |
| 1.73 | 2.62 | - | 0.35 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.19 | - | - | - | - | 4.36 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.96 | - | - | - | - | - | - | - | - | - | - | |
| 0.61 | 3.5 | - | - | - | - | - | - | - | - | - | - | - | - | -0.5 | - | - | - | - | - | - | 2.24 | - | 1.59 | 0.54 | 3.02 | 0.7 | - | - | 0.55 | - | - | - | - | -0.2 | - | - | - | - | - | - | - | - | - | - | 2.29 | 0.79 | 1.3 | 1.17 | 1.07 | 1.29 | -0.41 | -0.31 | 1.89 | - | - | |
MA_378836g0010 (MES17) | -1.32 | - | 0.79 | 2.25 | -0.18 | - | - | - | -3.6 | - | - | - | - | -2.73 | -2.47 | 1.27 | - | - | -3.69 | - | -0.13 | -2.28 | - | - | - | 3.55 | - | 0.24 | - | -1.38 | 0.94 | 0.88 | 0.8 | 0.93 | 0.58 | 1.0 | 1.5 | 0.54 | 0.65 | 2.06 | 0.97 | 0.39 | -2.65 | - | - | 0.11 | -1.14 | 0.99 | -0.53 | -2.3 | -2.15 | -0.7 | -1.47 | -2.42 | -2.22 | -0.77 |
| - | - | - | - | - | - | - | - | - | - | - | 1.61 | 0.55 | -0.08 | - | - | - | - | - | - | - | - | - | 2.87 | - | 2.91 | 1.4 | 2.88 | - | 1.25 | - | - | - | - | 0.17 | 0.24 | - | - | - | - | 1.53 | - | 1.8 | -0.21 | - | 2.39 | 1.49 | -2.16 | - | - | - | - | - | - | - | 2.47 | |
MA_539985g0010 (AAP3) | - | - | - | - | - | - | - | - | - | - | - | - | 5.2 | - | - | - | - | - | - | - | - | - | - | - | - | 4.27 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.27 | - | - | - | 5.2 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.08 | - | - | - | - | - | - | 5.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| -0.0 | -0.11 | 1.1 | - | -0.03 | - | - | 0.19 | - | -2.5 | - | - | - | - | - | - | - | - | - | -0.96 | 1.09 | 0.62 | - | - | - | 2.37 | - | - | - | -0.06 | 2.23 | -1.06 | 0.66 | -0.79 | -0.82 | 1.98 | 1.02 | 0.87 | -1.17 | -0.28 | 2.76 | 1.48 | -2.08 | -0.2 | - | 0.81 | 2.18 | -1.05 | -1.21 | - | -0.96 | 0.66 | -0.08 | -0.17 | -0.82 | - | |
MA_616532g0010 (PKS6) | - | 2.67 | - | -4.88 | -1.27 | 0.82 | 1.41 | - | -3.0 | -0.51 | 0.63 | -0.3 | 1.52 | -2.38 | -2.55 | 2.07 | - | 3.35 | -0.1 | -1.96 | -0.12 | - | 0.28 | - | - | 1.33 | -1.32 | - | - | - | -0.01 | -0.04 | 0.52 | -1.64 | 0.37 | 0.7 | 0.17 | -0.05 | -0.55 | -0.05 | -0.19 | -0.16 | -1.67 | -1.43 | -2.96 | 1.95 | -0.82 | -2.26 | -3.11 | - | - | - | - | - | - | - |
MA_646592g0010 (ASN3) | -5.4 | 3.79 | - | - | -8.14 | - | - | -7.21 | -2.66 | -1.38 | - | -6.13 | -6.12 | -5.42 | -5.84 | - | - | - | -1.18 | -3.55 | -2.27 | -3.33 | -2.05 | -0.61 | -3.15 | 3.89 | -0.53 | - | -4.23 | -1.76 | -0.38 | 0.22 | 0.33 | 0.33 | 0.57 | -0.56 | -0.1 | 0.16 | 0.45 | 0.65 | 0.43 | -0.8 | -5.9 | -4.71 | -4.8 | -0.18 | -2.88 | -0.45 | -0.1 | 0.61 | -1.18 | -0.83 | 1.21 | 1.26 | -3.11 | -2.56 |
| - | - | - | - | - | - | - | - | - | 3.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.51 | - | - | - | - | - | - | - | 4.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.96 | - | - | - | - | - | |
MA_69882g0010 (BRL3) | - | 1.68 | - | - | - | - | - | - | 1.94 | 1.77 | - | - | - | - | - | - | - | - | -0.96 | -0.35 | - | 2.19 | - | - | 0.71 | 3.07 | - | - | - | - | - | -0.26 | - | - | - | - | - | - | - | - | - | - | - | - | 4.14 | 2.47 | - | 0.09 | 1.43 | - | - | - | 0.71 | - | - | -1.79 |
| - | 5.68 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.27 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | 0.35 | - | - | - | - | - | - | -5.48 | - | - | - | 1.2 | - | -2.24 | - | - | - | -1.31 | -2.09 | 0.58 | 2.44 | -1.03 | 3.18 | 2.71 | 2.37 | - | 2.66 | - | 1.4 | - | -0.04 | -0.97 | -2.01 | -0.24 | - | -0.69 | -2.3 | 0.8 | -2.38 | -2.04 | -0.83 | - | - | - | 0.68 | 2.67 | - | -3.77 | - | -2.02 | - | - | - | - | - | |
MA_829942g0010 (ASN2) | - | -0.03 | - | - | - | - | - | - | - | - | - | -2.2 | - | -1.3 | -1.66 | - | - | - | - | -1.46 | - | - | - | 0.06 | - | 4.36 | 0.91 | - | - | -1.56 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -1.27 | - | - | -5.08 | 2.85 | 0.07 | 0.88 | 2.98 | 3.38 | -2.37 | -0.05 |
| - | - | - | - | 4.55 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.78 | - | - | - | - | - | 4.24 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
MA_8925589g0010 (ASN3) | - | 0.53 | -1.06 | - | - | - | - | - | - | -1.86 | - | - | - | - | - | - | - | - | -1.9 | -0.72 | 2.74 | -3.13 | 2.78 | - | - | 2.58 | - | - | - | - | - | -3.1 | -3.15 | - | - | - | -3.1 | - | - | - | - | - | - | -4.11 | - | 4.17 | 0.6 | -0.04 | 0.14 | 1.46 | -1.45 | -1.12 | -0.19 | 2.1 | -1.46 | 1.16 |
MA_9588804g0010 (AAP3) | - | - | - | - | - | - | - | - | -0.99 | - | - | - | - | - | - | 3.21 | - | - | - | - | 4.45 | - | - | - | - | 2.89 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.19 | - | - | - | - | - | - | - | - | - | - | 2.19 | - | - | - | 1.72 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.