Heatmap: Cluster_150 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
- - - - - - - - - - - - - - - - - - - - - - - - - 1.62 - - - - - 2.56 - - - - - - - - - - 4.14 1.52 - 4.28 - - 2.84 - - - - - - -
0.72 -2.97 - - -4.43 - - -3.67 -2.15 -0.81 - -1.01 -0.13 -0.25 -0.54 1.68 - 1.23 -0.75 1.64 -0.76 1.07 -0.76 -0.88 -1.35 1.89 2.62 0.12 0.79 1.33 0.36 -2.28 -0.44 -2.55 -2.67 -1.89 -1.24 -2.95 0.03 -0.38 0.0 -1.67 0.85 1.9 0.95 -1.15 1.02 0.51 0.32 -3.97 -1.23 -2.84 -3.94 -1.0 -0.04 -1.2
- 3.61 - - - - - - - - - 3.0 4.0 - 4.16 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.97 - - - - - - - -
-3.51 0.26 -1.4 -4.37 -4.06 -6.32 - 1.65 1.39 1.02 -1.16 -2.08 -1.23 -3.35 -2.07 - - - 0.27 -3.52 1.23 -0.95 0.81 -0.29 -2.59 -3.58 -2.84 -3.53 -3.67 -2.57 -3.93 - - -5.42 -5.21 -5.27 - -3.62 -2.69 -3.64 - - -0.72 -1.59 -4.9 0.97 -2.33 1.38 1.44 1.95 1.93 2.14 1.61 1.49 3.1 1.07
- - - - - - - - 0.7 - - - - - - - - - -0.81 - - - - - - -4.88 - - - - -3.16 - - - - - - - - - - - - - - - - 0.77 1.85 -0.13 -0.31 - 1.02 0.36 -2.23 5.43
-3.31 -3.34 - -4.93 - -9.21 -2.73 -3.42 -0.79 -2.56 - -4.97 -3.72 - -7.54 -0.89 - -0.86 -2.12 1.69 -1.17 -1.38 -1.19 1.22 -0.03 0.6 2.25 1.45 2.04 1.52 0.89 0.73 0.42 0.25 0.46 0.24 0.37 0.19 0.59 0.34 1.07 -0.26 -2.77 -2.65 -2.7 -4.29 -2.89 1.21 1.38 -0.04 -0.96 -0.8 0.23 -0.12 -0.79 1.35
-0.67 -0.19 - - - - - - - 0.97 - - - - - - - - -0.06 - - 1.96 - - - 1.88 - - - - - - - - - - - - - - - - - - -1.31 -0.92 1.1 1.71 1.78 -1.88 - - - - - 5.09
-1.0 1.68 -3.41 -3.18 -3.45 -4.09 -4.48 -1.03 0.32 0.34 -0.62 -1.72 -0.63 -0.66 -1.96 -4.49 - -3.36 -0.52 -0.31 -0.26 -1.6 1.52 -3.26 -0.36 -0.56 -1.14 -1.37 -1.78 -1.72 0.05 -0.96 -0.48 0.15 -0.05 0.61 0.03 1.05 0.46 0.38 0.45 0.32 -0.01 -1.24 -0.09 2.21 -1.26 1.73 1.14 0.08 -1.78 -1.63 0.97 1.43 -1.23 1.93
-3.87 -4.57 - - - - - -6.27 -5.98 - - - - - - - - - - 2.87 -4.36 -5.42 -0.72 -0.96 2.23 -0.83 2.21 1.67 1.26 1.27 1.17 1.79 1.54 1.49 1.33 0.89 0.69 1.28 1.04 0.84 1.26 0.7 - -7.4 - -3.94 -0.27 -1.78 -1.82 - - - - - - -1.72
- 1.07 - - - - - 3.69 - -0.25 - 2.46 1.09 2.79 3.04 - - - 1.67 0.22 - 3.19 - - - - - - - - - - - - - - - - - - - - - - - - - -2.28 - - 0.35 - 0.26 - - 0.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.63 4.6 - - - - - - 2.82
-0.04 - - - - 1.39 2.14 - 0.17 - - -0.59 2.15 - - - - 2.31 -2.44 - 2.73 -1.24 - 0.12 - -0.19 - - - - - - - - - - - - - - - - 1.99 1.37 -2.25 -0.31 2.86 1.76 3.14 - -1.69 -2.88 - - -2.68 -
- - - - 1.39 - - - -3.65 - - 0.11 - - -0.31 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.17 0.99 2.26 2.85 -0.3 1.49 -0.07 -0.4 0.58 -0.08 4.85
- - - - - - - - 1.78 - - - - - - - - - - - 4.17 - - - - - - - - - - - - - - - - - - - - - - - - - - 2.15 - - - - - - - 4.91
- - - - - - - - -3.9 -1.51 - - - - -3.59 - - -1.51 -2.31 - - - - - - 1.25 - - - - - - - - - - - - - - - -3.44 - - - - - 2.98 3.05 -1.24 -1.83 - 0.17 0.43 -0.46 5.02
- - - - - - - 3.07 - - 3.38 - 3.35 2.04 - - - - 1.74 2.43 2.49 1.47 - - - -1.28 - - - - - - 1.41 - - - - - - - - - - - 1.44 - - - - - - - - - - -
3.75 - - - - - - -0.75 3.57 -0.83 - - - - - - - - -0.38 - 1.26 1.56 - - - 2.7 - - - - - - - - - -0.97 - - - -1.11 - - -0.94 - 1.36 - 1.35 0.13 1.43 - - - - - - 2.71
-0.09 -2.78 - - - - - - 0.58 1.11 - -2.83 - - - - - - 0.54 1.61 -3.58 2.0 - 4.07 0.5 -0.84 2.52 1.66 0.57 1.85 - - - - -4.49 - - - - - - - - - - - 0.09 -1.85 -0.92 -2.22 0.65 0.71 -0.23 -1.15 1.46 -1.54
MA_12781g0010 (PDR12)
2.41 - - - - - - 1.89 3.48 0.99 - - - - - - - - 0.24 - 2.89 - 1.89 - - -1.49 0.89 - - - -1.21 - - - - - - - -0.0 - 1.23 0.18 -0.28 - 0.81 1.55 - 0.7 -1.92 0.59 -0.03 1.44 -0.28 - - -0.07
- - - - - - - - 4.27 1.16 0.76 2.14 2.16 2.07 - - - - 2.03 - - - - - - -2.59 - - - - - 0.91 - - - - - - 0.67 - - 1.23 - - 0.85 0.86 - -1.74 - - 1.77 - 0.77 - - -0.64
-3.59 -1.7 - -7.06 -3.6 - -5.09 -1.84 -3.2 -1.85 -5.21 -2.44 -1.3 -1.92 -1.72 -2.22 - -1.08 -1.01 -4.73 - -3.8 -3.08 -4.19 - 2.33 -4.08 - -5.32 -4.23 -4.27 -6.11 -6.12 - -5.98 -5.07 -6.1 -3.27 -2.62 -5.09 -2.01 - -1.75 -1.69 -2.44 -5.94 - 2.68 2.57 -0.33 -0.69 -1.4 0.73 1.35 0.2 4.7
MA_139026g0010 (BCDH BETA1)
-0.52 0.33 -0.64 -0.57 -0.2 -0.93 -2.53 -0.73 -0.48 -2.08 1.08 -0.13 -0.05 -0.27 -0.32 -3.63 -4.33 -1.56 -2.47 -0.16 -0.83 0.22 -0.66 0.11 -0.95 0.36 0.36 0.44 0.27 0.38 0.73 0.84 0.21 0.45 0.28 0.32 0.57 0.58 0.89 0.51 0.91 0.06 -0.71 -0.52 -0.26 0.06 -0.67 0.47 0.51 0.24 0.02 0.11 0.17 0.17 0.09 0.29
MA_141053g0010 (UGT85A1)
-3.28 - - - - - - - -0.36 - - -3.0 -2.28 - - - - - -4.46 -2.33 -3.19 - - -1.72 -3.36 1.86 - - -1.85 -2.34 1.44 1.66 0.48 1.67 1.12 1.19 1.1 1.14 1.83 1.14 1.99 -0.55 -2.0 -3.11 -1.01 -2.53 - 3.2 3.15 -1.45 -3.23 -4.22 -3.35 -2.43 -3.13 -2.17
- - - - - - - - -5.47 -2.03 - - - - - - - - -4.12 - - - - - - 1.36 - - - - 1.93 2.1 1.36 1.14 0.93 1.55 2.3 1.55 1.66 2.11 2.02 1.34 -0.84 - - -1.96 - 2.59 2.62 -2.3 - - - -2.29 - -3.77
MA_14774g0010 (BGAL8)
-2.1 -3.19 -6.19 -4.15 -7.09 -7.59 - -0.05 0.36 -3.33 -0.69 -2.85 -1.92 -3.66 -3.52 - - - -3.42 -4.15 -0.04 -0.15 -1.42 -1.62 -6.94 -0.75 - -7.91 -5.45 -6.96 -2.01 -2.18 -2.33 -2.47 -1.98 -2.48 -2.18 -1.96 -2.77 -1.84 -1.38 -3.0 -2.61 -3.74 -4.14 -3.04 -1.92 0.23 0.05 3.63 1.06 -0.21 3.78 3.08 -0.73 2.31
- - - - - - - - -2.82 - - - - - - - - - -5.75 - - - - 0.05 - -2.46 - - - - -2.24 -0.7 -0.11 -1.89 -0.79 -0.27 0.44 4.37 0.13 - 3.52 -1.92 - - - - - 0.85 2.43 -3.43 - -4.41 -1.59 -0.01 - 2.94
MA_160937g0010 (ATCWINV1)
- - - - - - 2.69 - -0.29 - - - - - -0.55 - - - - - - - - - - 3.46 - - - - -1.29 - -0.06 - - 0.85 - 1.12 1.15 0.14 0.04 - - - - - - 2.47 2.85 2.11 -1.22 - 1.42 2.1 - 1.53
-0.85 -1.16 -0.3 0.55 0.2 0.48 1.13 0.21 -0.33 -0.22 0.42 -0.64 0.08 0.24 -1.21 2.23 - 0.57 0.55 -1.32 -0.08 -0.79 0.15 -0.51 -0.8 0.01 -0.05 -1.05 -0.96 -1.08 -1.61 -2.68 -2.37 -4.24 -2.4 -2.27 -1.51 -2.73 -1.94 -1.0 -1.82 -1.72 0.87 0.39 1.35 0.15 -0.78 0.01 0.34 0.08 0.46 1.21 0.92 0.88 1.01 1.01
3.32 - - - - - - 2.51 - 0.74 - 2.76 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.25 3.22 - 4.15
1.46 2.81 - - - - - -1.45 1.7 - - - -0.26 - -1.66 - - - -0.45 0.41 - 1.53 - -0.56 - -0.99 0.55 1.44 -0.69 -0.6 -0.02 0.54 - 0.73 -1.24 1.03 - -1.71 -1.25 -1.17 - - 1.18 0.8 2.45 1.8 0.64 -0.74 -0.27 - - - 0.72 1.94 -1.41 -1.4
3.93 3.82 - 1.15 - - - -0.58 - 1.04 - 1.51 2.08 - - - - - 2.31 - - - - - - -1.69 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.22
1.33 0.53 - - - - - -2.08 0.7 -2.95 - - - - - 1.45 - - -1.9 -0.02 1.7 2.36 -0.34 1.47 -1.25 1.69 -3.67 -0.78 -1.59 -1.5 -0.65 -1.97 -1.25 -0.77 -0.7 -1.05 -2.36 -1.5 -0.96 -0.82 -1.0 - 0.28 -0.96 -0.98 -0.59 2.75 2.38 2.66 -3.42 -3.12 -1.67 -1.43 -1.24 -3.61 0.54
- - 2.11 0.83 0.18 - -1.37 4.07 0.09 0.01 -0.14 -2.22 - - - - - - -0.05 - 1.81 - - - - -3.45 - -1.48 -1.61 - 1.81 -0.12 0.98 0.09 0.75 -0.98 -0.14 0.95 -0.87 0.22 1.08 -0.74 -2.78 -2.97 - - - 0.72 1.39 - - - - - - 0.78
- - - - - - - - - - - - - - - - - - - - 3.09 2.95 - - - 1.05 - - - - - - - - - - - - - - - - 0.98 1.25 2.51 3.82 2.49 1.69 1.35 - - - - - - 1.15
- - - - - - - - -3.36 0.84 - - - - - - - - 2.72 - - - - - - 2.74 - - - - 0.03 - - - - - - - - - - - - - - 1.06 2.22 3.4 2.55 - - - - - - 4.06
- - - - - - - - 0.9 - - - - - - - - - - - 0.6 - - - - 2.48 - - - - - - - - - - - - - - - - - -1.44 - -0.26 - 4.7 4.32 - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.51 3.39 - - - - - - -
-1.9 1.03 - - - - - -2.05 2.4 -0.9 -3.53 -4.64 -4.74 -4.46 -6.2 - - - -1.02 -1.11 -0.97 3.05 -0.37 -5.09 -2.34 1.96 -3.4 -1.77 -3.22 -2.55 -0.54 -0.58 -0.47 -0.01 -0.61 0.73 -0.57 0.4 0.16 0.29 0.87 -0.26 -3.34 -3.62 -2.4 1.27 -2.08 2.16 1.62 -0.31 -2.55 -4.45 0.42 0.68 -3.37 2.36
- 0.58 - - - - - - - 0.24 - - -0.58 0.28 -1.47 - - - - - - - - - - -0.07 - - - - -1.04 - - - - - - - - - - - 5.12 2.82 2.98 - - - - - - - - - - -
- 4.22 - - - - - - - - - - - - - - - - - - - 2.41 - - - -0.26 - - - - - - - - - - - - - - - - 1.25 2.39 - - - 2.0 1.4 - - - - - - 4.08
1.01 0.46 - -2.19 - - - -3.8 -3.33 -1.99 - - - - - - - -1.97 -0.54 -1.71 -1.8 0.82 -0.8 0.78 - 2.56 -1.22 -0.91 -1.46 0.51 0.81 0.2 -0.5 0.36 0.65 -0.16 1.4 0.79 1.72 0.21 -1.83 -0.82 -2.25 -1.96 -2.55 -0.91 -2.71 1.66 2.54 0.55 0.29 0.13 0.02 -0.16 -0.66 2.03
0.36 1.47 - - - - - - -2.45 - - - - - - - - - -2.41 - -1.13 1.01 -0.34 -0.25 -1.3 2.84 - - -0.59 -1.29 -1.65 0.99 - 0.51 -1.37 -1.98 0.17 -0.2 0.18 0.74 -0.29 -0.55 -3.3 -1.58 -0.61 - - 2.46 3.08 -1.42 1.67 0.35 0.63 0.33 -0.53 2.25
-1.29 -0.83 -3.79 -4.5 -4.57 -4.82 - 2.13 0.47 -1.59 -2.02 -5.8 -4.14 -3.26 -4.05 -6.11 - - -1.54 -1.45 1.63 0.97 0.52 -1.33 -2.59 1.7 -1.56 -2.16 -2.48 -1.92 -0.23 0.08 -0.49 -0.48 -0.24 -0.44 0.02 0.06 -0.81 -0.07 0.4 -1.04 -0.53 -0.56 -2.64 -0.38 0.49 -0.88 -0.76 2.89 1.25 0.55 1.69 2.17 0.95 -2.46
- -1.09 - -5.67 - - - - -2.32 -1.54 - - -1.92 - - - - - 1.81 - -3.28 -3.16 -2.69 -1.81 -3.13 -1.09 -4.29 - -5.53 - -6.23 -5.35 -6.31 -6.28 -4.13 -2.7 -5.3 -2.75 -6.54 -4.61 -6.4 -5.39 -4.95 -4.26 -2.7 -2.04 - -0.55 -1.2 4.15 1.3 -0.48 3.01 3.9 -1.18 1.79
- - - - - - - 5.66 - -1.43 - 0.32 - - - - - - -1.29 - - - - - - - - - - - - - - - - - - -0.09 - - - - - - - - - -1.42 -0.1 - - - - - - 0.23
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.38 3.3 - - - - - - 5.16
- - - - - - - - 2.58 - - - - - - - - - 1.68 - - - - - - - - - - - - 3.25 - - - - - - - - - - 3.1 - - - - 2.79 4.19 - - - - - - 1.83
2.73 4.04 - - - - - - -2.06 0.23 - - - - - - - - 0.12 - - - - - - -0.88 - - - - 2.17 1.72 1.16 - - 2.05 0.52 - 1.22 2.23 1.85 1.13 - - - - - -0.81 -0.12 - - - - - - -
- - - 3.32 - - - 1.25 1.37 - - - 1.31 - 1.94 - - - - - - - - - - 4.02 - - - - 0.53 - - - - - - - - - 1.95 - - - - - - 0.34 1.18 - 0.98 - - - 1.16 2.46
-2.01 0.18 - - - - - 1.63 -1.3 -1.79 - - - - - - - - -1.36 -3.04 1.66 1.23 0.27 -2.23 -6.09 1.27 - -4.45 -4.16 -2.61 -0.59 0.06 -0.75 -0.62 -0.48 -0.6 -0.19 -0.04 -0.45 0.02 -0.03 -1.53 -1.4 -1.4 -5.4 -0.1 0.15 -0.48 -0.39 3.38 1.29 0.1 2.33 2.55 0.51 -0.19
-4.52 -0.92 - - - - - - -1.56 -1.63 -5.6 - -1.65 - - - - - 2.2 - -2.83 -2.31 -2.42 -1.95 - -1.09 - - - - - - - - -3.27 -2.47 - -2.12 - - -5.54 - -4.47 -1.99 -3.03 -1.11 - -0.23 -1.1 4.13 1.33 -1.05 3.16 3.75 -1.68 1.42
4.12 2.01 - - - - - - -2.04 1.77 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.5 2.31 - - - - - - 1.74
- - - - - - - - - -1.95 - - - - - - - - -1.7 - - - - - - -1.95 - - 0.33 - - - - - -0.22 - -0.15 - - - - -0.53 - - - - - 4.41 4.92 - - - - - - -
- - - - - - - - -0.34 -0.03 - 2.3 - - - - - - - - - - - - - -1.41 - - - - - - - - - - - - - - - - - - - - - 4.1 3.02 2.92 - 0.56 3.24 1.91 - 0.6
- -0.78 - - -0.31 - - - -4.89 -0.4 - - - -3.03 - - - - -2.46 - - -2.59 - - - -5.08 - - - - - - - - - - - - - - - - - - -1.63 -2.44 - 2.65 2.58 - - - - - - 5.34
- - - - - - - - -0.85 - - -1.62 - - -0.98 - - - - - - - - - - -5.37 - - - - - - - - - -0.4 - - - - - - - - - -1.83 - 4.47 4.52 - - - -0.92 - - 2.99
-4.46 -3.97 - -3.77 - - - - 0.18 - - - -5.71 - -6.32 - - - -5.32 - - -2.86 - -5.27 - 2.95 - - - - -4.31 - -7.18 - - -2.58 -4.7 -2.77 -4.1 -3.77 -2.67 - - - -4.22 -4.17 -5.07 1.81 1.69 2.9 -1.81 -1.62 2.31 3.08 -3.65 4.13
-0.14 0.87 -5.43 -4.74 -5.09 -5.45 -3.0 -0.03 0.33 -0.74 -1.83 -1.06 0.13 -0.43 -0.84 -4.75 - -4.3 -0.06 -0.16 -0.29 0.33 0.11 0.18 0.29 -0.08 -0.28 -0.02 0.05 0.0 0.25 -0.32 0.45 -0.01 0.5 0.17 0.02 0.67 0.59 0.49 0.07 0.13 0.52 0.72 0.69 0.09 -0.15 -0.94 -0.78 0.57 1.05 0.95 0.76 0.63 0.73 1.06
MA_55965g0010 (BGAL8)
-1.09 -0.46 - - - - - 1.15 0.22 -0.25 -3.75 -2.4 -3.45 - -3.84 - - - -0.1 - 1.37 1.01 1.01 - - 1.94 - - - -2.67 -0.02 0.55 0.05 -0.25 0.67 0.04 0.94 0.95 -0.69 1.7 0.53 -0.56 -2.44 -1.67 - -0.96 0.1 -2.0 -1.85 3.0 0.91 0.36 1.53 1.95 0.27 -3.54
- - - - - - 3.0 - 4.01 - - - - - - - - - - - - - - - - - - - 2.77 3.86 - - - - - - - - - - - - - - - - - 1.77 1.64 - - - - - - 2.0
-2.57 - - - - 1.32 4.39 - -0.85 - - -0.16 1.79 - - -1.01 - 3.29 -5.3 - 1.7 -4.08 - - - -1.87 - - - - - - - - - - - - - - - - 1.27 0.59 - -2.89 2.61 -0.69 1.44 - - -4.06 - - -3.99 -5.68
- - - - - - - - - 2.66 - - 0.23 5.46 0.85 - - - 1.03 - - - - - - -0.55 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - -1.99 - - - - - - -5.79 - - - - - - - - - - - - - - - - - - - -2.6 - 3.07 2.86 -2.94 - - - - - 5.31
- - - - - - - - - -0.9 - 0.53 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.72 4.79 - - - - - - -
- - - - - - - -1.31 -3.8 - - - - - - - - - - - 4.67 - - - - - - - - - - - - - - - - - - - - - 2.36 2.93 1.09 3.37 - 1.09 1.5 - - - - - - -
1.76 0.65 - - - - - - - 1.66 - - - - - - - - 0.64 - - - - - - 2.49 - - - - - - - - - -0.37 - - - - - - - - - - - 1.56 1.62 - - - - - - 5.08
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.