- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.89 | -3.41 | -3.97 | 0.57 | -5.43 | -4.69 | -2.96 | -0.47 | -1.07 | -2.59 | - | -2.44 | -2.91 | -4.11 | -1.68 | -5.16 | 4.79 | -5.38 | -1.76 | -5.32 | 0.24 | -2.1 | -1.17 | - | -6.22 | -1.99 | -6.21 | -6.49 | - | -5.83 | -2.64 | -2.54 | -2.24 | -1.78 | -2.63 | -2.96 | -2.71 | -2.26 | -2.77 | -1.7 | -1.95 | -2.68 | 0.35 | -0.37 | 1.47 | -0.29 | -0.5 | 1.07 | 0.99 | -2.49 | 1.32 | 1.79 | -1.04 | -2.86 | 0.35 | -0.86 | |
| - | - | -3.7 | -2.7 | -3.55 | - | - | - | -4.1 | -3.9 | - | - | - | - | -4.98 | - | 5.51 | - | -5.12 | - | - | - | - | - | - | -6.33 | - | - | - | - | -0.99 | -2.18 | -1.57 | -0.48 | -1.94 | -1.34 | -2.08 | -0.58 | -0.5 | -1.79 | -2.14 | -3.09 | - | - | - | - | - | 1.19 | 0.7 | - | - | - | -3.89 | - | - | 0.26 | |
MA_90036g0020 (UGT85A3) | - | - | - | - | - | - | - | - | - | -4.78 | - | - | - | - | -3.43 | - | 5.61 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -3.05 | - | 2.0 | 1.49 | - | - | - | - | - | - | -2.76 |
| -5.27 | -4.06 | -3.84 | -3.3 | -3.63 | -2.25 | -1.38 | -6.18 | -2.41 | -2.76 | -3.62 | -3.18 | -4.43 | -6.62 | -4.4 | -2.48 | 5.01 | -4.76 | -2.36 | -2.61 | 1.63 | -4.42 | -0.37 | - | -6.34 | -5.05 | -3.18 | - | -6.42 | -6.33 | -5.91 | -7.2 | -5.24 | -4.18 | -4.67 | -5.0 | -6.14 | -5.02 | -5.43 | -6.19 | -5.39 | -5.04 | 0.57 | 1.0 | 2.24 | 0.74 | -1.69 | 1.57 | 1.68 | -7.38 | -4.94 | -4.39 | -7.48 | -7.5 | -2.61 | -1.08 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.