- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA_10159692g0010 (C4H) | 2.12 | 0.91 | -0.18 | -2.52 | -0.42 | -3.28 | - | 2.72 | -1.86 | -1.37 | -0.98 | -1.73 | -1.72 | -2.59 | -1.79 | -3.91 | - | -6.1 | -1.84 | -1.93 | 1.16 | 0.76 | 0.08 | 0.05 | -2.32 | -0.65 | -4.34 | -5.89 | -5.17 | -3.35 | 1.56 | 0.27 | 1.53 | 1.04 | 1.66 | 1.78 | -0.36 | 1.24 | 0.04 | 0.58 | 0.42 | -0.23 | - | - | - | 2.46 | 1.01 | -9.43 | - | -2.58 | -6.12 | - | -4.22 | -3.84 | -6.21 | - |
MA_106581g0010 (AIR3) | 2.88 | 2.5 | - | - | - | - | - | 2.37 | -0.56 | -0.32 | - | -3.85 | -0.85 | - | -4.24 | - | - | - | -2.69 | - | 1.37 | -4.08 | - | - | - | 0.61 | - | - | - | - | 1.07 | 0.53 | 1.82 | 0.55 | 1.72 | 1.11 | 0.95 | 1.11 | 0.7 | -0.46 | 1.4 | 0.87 | -0.41 | -1.69 | 0.29 | -0.88 | 0.23 | -2.41 | 0.13 | -2.56 | -1.5 | -3.1 | -2.51 | -4.04 | -2.4 | -3.25 |
| 2.47 | -0.45 | - | -0.23 | -0.62 | - | - | 2.29 | -4.02 | 0.27 | -1.38 | - | -2.09 | - | -0.26 | - | - | - | -0.4 | -0.08 | 1.08 | 1.05 | 0.34 | 0.64 | 1.39 | -0.32 | -1.25 | -0.36 | -0.49 | 0.19 | 0.39 | -0.29 | 1.73 | 0.08 | -1.15 | 1.16 | 0.71 | 0.48 | -0.64 | -1.25 | 0.87 | -1.28 | -2.67 | - | - | 1.51 | -1.16 | -4.8 | -2.24 | -0.51 | -0.62 | 0.29 | 0.18 | -0.09 | 0.6 | -3.74 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.