Heatmap: Cluster_606 (HCCA)

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Gene	Immature female cone	Immature male cones	Cambium and expanding xylem	Cambium	Expanding xylem	Expanding and mature xylem	Maturing xylem	Wood	Bark	Bark, healthy	S1 xylem tracheids	S1 whole sections	S2 ray cells	S2 xylem tracheids	S2 whole sections	Dead late wood	Phloem and cambium	Dear early and late wood	Bark, root and butt rot	Vegetative shoots - needles	Vegetative shoots - stem	Vegetative shoots	Girdled twig - stem	Dried twig - needles	Girdled twig - needles	Needles	Needles - dawn	Needles - later afternoon	Needles - midday	Needles - night	Light, 1 hour	Light, 3 hours	Light, 5 hours	Light, 7 hours	Light, 9 hours	Light, 13 hours	Light, 15 hours	Darkness, 1 hour	Darkness, 3 hours	Darkness, 5 hours	Darkness, 7 hours	Darkness, 11 hours	Vegetative buds	Female buds	Male buds	Buds	Pineapple galls	Somatic germinants - abnormal type	Somatic germinants - normal type	Cell culture - H20 - 5 days	Cell culture - KI added - 5 days	Cell culture - KI added - 20 days	Cell culture - KI removed - 4 days	Cell culture - KI removed - 12 days	Cell culture - solid medium	Somatic embryogenic cell line
MA_10434970g0020 (HMA1)	0.07	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.04	0.0	0.15	0.11	0.05	0.12	0.0	0.0	0.0	0.02	0.03	0.0	0.0	0.0	0.0	0.06	0.08	0.0	0.0	0.0	0.0	0.73	1.05	1.73	0.73	1.54	1.02	1.34	1.36	1.15	1.13	1.18	0.82	0.0	0.0	0.0	0.03	0.07	0.0	0.0	0.03	0.06	0.0	0.0	0.03	0.03	0.0
MA_170085g0010	0.0	0.07	0.0	0.0	0.0	0.0	0.0	0.05	0.0	0.0	0.02	0.04	0.02	0.05	0.05	0.0	0.0	0.0	0.01	0.0	0.0	0.0	0.0	0.0	0.0	0.01	0.0	0.0	0.0	0.0	0.33	0.43	0.62	0.67	0.3	0.33	0.45	0.77	1.01	0.3	0.63	0.47	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.02	0.03	0.0	0.0	0.0	0.03	0.01
MA_171787g0010 (CSI1)	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.35	0.26	0.32	0.25	0.0	0.0	0.0	0.01	0.1	0.0	0.0	0.0	0.0	0.0	0.09	0.0	0.0	0.0	0.0	1.34	1.16	1.87	2.31	2.02	1.87	1.17	2.8	1.87	1.49	1.03	1.21	0.0	0.0	0.0	0.04	0.0	0.0	0.0	0.0	0.14	0.0	0.04	0.04	0.05	0.0
MA_35652g0010 (CSI1)	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.02	0.0	0.19	0.0	0.05	0.02	0.0	0.06	0.0	0.0	0.0	0.12	0.0	0.04	0.07	0.0	0.0	0.0	0.06	0.0	0.0	0.0	0.0	0.51	0.69	1.1	0.95	0.67	0.88	0.51	1.45	0.68	1.03	0.86	0.58	0.02	0.01	0.03	0.04	0.0	0.0	0.0	0.0	0.02	0.02	0.02	0.0	0.0	0.0
MA_406979g0010 (CSI1)	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.13	0.0	0.85	0.42	0.23	0.54	0.0	0.0	0.0	0.17	0.0	0.11	0.0	0.0	0.0	0.1	0.13	0.0	0.0	0.0	0.0	1.58	1.95	3.05	3.52	2.44	2.37	2.09	3.61	1.7	2.18	1.52	2.19	0.0	0.0	0.08	0.05	0.0	0.01	0.01	0.06	0.0	0.0	0.05	0.09	0.12	0.0
MA_4903044g0010	0.0	0.32	0.0	0.0	0.14	0.0	0.0	0.72	0.39	0.34	0.4	0.01	0.39	0.4	0.2	0.33	0.0	1.29	0.19	0.62	0.37	0.28	1.83	0.23	1.16	0.43	2.04	1.33	0.47	3.57	5.02	6.47	7.21	8.74	6.05	7.9	7.37	12.96	9.5	5.94	9.23	6.03	0.34	0.25	0.54	4.23	0.16	0.57	0.58	1.22	1.09	0.26	0.33	0.99	0.61	0.12

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)