- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3.07 | 0.07 | - | - | -3.45 | - | 0.79 | -1.2 | 2.27 | 0.55 | 0.68 | 0.78 | 0.66 | - | -0.37 | - | - | - | 1.57 | 0.16 | -1.68 | -1.73 | 0.54 | -0.66 | - | -0.61 | -0.79 | - | -0.45 | -0.94 | -1.42 | -0.21 | -0.82 | -2.78 | -2.58 | -0.99 | -2.36 | -1.56 | - | -1.51 | -1.11 | -2.49 | 1.85 | -0.88 | 1.65 | 1.21 | - | -0.97 | -0.25 | -2.86 | 0.73 | -0.6 | -0.5 | -1.36 | 1.21 | 1.07 | |
| 2.81 | -0.36 | - | -1.86 | -1.89 | -0.62 | 0.84 | -1.41 | 2.29 | 0.23 | 1.09 | 0.89 | 1.34 | -0.93 | -0.07 | 0.46 | - | 2.2 | 0.78 | -2.05 | -0.92 | -1.85 | 0.8 | -0.66 | -0.91 | -1.25 | -1.33 | -4.2 | -1.45 | -0.89 | -2.1 | -3.13 | -1.64 | -4.02 | -2.85 | -3.44 | -1.46 | -2.77 | -1.46 | -3.32 | -2.95 | -2.35 | 1.61 | -0.66 | 1.2 | 0.99 | -1.01 | -1.55 | -1.36 | -1.21 | 0.09 | -0.15 | -0.55 | -1.43 | 0.22 | 0.39 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.