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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA_10196363g0010 (TPS02) | -1.04 | -4.26 | -0.67 | 2.73 | -0.52 | -7.03 | - | 1.65 | 1.64 | -3.19 | - | -2.61 | -1.13 | 0.32 | -2.83 | -4.36 | - | -6.32 | 0.21 | -2.21 | 4.01 | -1.22 | 3.84 | -6.26 | - | 1.46 | - | - | - | - | -5.42 | -4.93 | -5.36 | -5.84 | -5.95 | -6.61 | -4.4 | -4.98 | -4.93 | -6.82 | -6.61 | -6.21 | -2.7 | -3.89 | -6.75 | -1.67 | -0.07 | 0.09 | 0.25 | - | - | - | - | -9.46 | - | -7.72 |
MA_10268065g0010 (GGPS1) | 1.15 | -3.76 | -2.54 | 2.46 | - | - | - | -1.35 | -6.43 | -1.87 | -3.73 | -2.37 | 0.5 | 3.08 | 0.44 | 0.14 | - | - | -1.25 | -4.79 | 1.69 | 3.65 | 0.65 | - | - | 2.06 | - | - | - | - | - | -4.58 | - | - | -3.79 | - | - | - | - | - | - | - | -1.55 | -1.92 | -3.29 | -1.56 | 2.85 | 0.39 | 1.56 | - | -4.48 | -4.67 | - | - | -3.53 | - |
| 3.33 | - | -1.84 | 3.59 | -4.1 | -1.17 | -1.13 | -0.26 | 1.75 | 1.54 | - | -2.68 | -3.26 | -1.14 | 0.79 | -0.94 | - | 0.55 | 1.49 | - | 1.69 | -1.46 | 0.65 | - | - | 1.89 | - | - | - | - | -5.69 | - | - | - | - | - | - | -4.71 | -4.7 | - | - | - | 1.19 | 0.69 | 0.79 | -1.98 | 0.45 | -2.2 | 0.68 | - | - | - | - | - | -4.36 | -2.4 | |
| - | - | - | 5.35 | - | - | - | - | - | 2.33 | - | - | - | - | - | - | - | - | 2.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.44 | |
MA_10427849g0010 (MYB107) | 2.27 | - | - | 1.48 | -1.21 | - | - | 1.38 | -2.13 | -1.25 | - | -1.81 | -0.21 | 0.57 | 0.61 | - | - | - | -2.32 | -2.19 | 3.86 | 0.33 | 3.44 | - | - | 2.26 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.48 | - | 1.33 | 2.46 | - | - | - | - | - | - | - | - | - |
| -3.07 | -4.29 | -0.1 | 3.66 | -0.54 | -0.71 | 0.53 | -0.22 | 0.65 | -0.34 | -2.72 | -1.09 | 0.19 | 1.66 | 0.87 | 1.68 | - | 1.04 | -0.93 | -2.75 | 1.96 | -0.15 | 1.85 | 2.97 | -4.62 | -7.19 | -3.93 | -5.73 | -7.64 | -3.53 | -1.92 | -0.47 | -1.03 | -1.01 | -0.86 | -1.59 | -1.18 | -1.21 | -1.77 | -1.27 | -1.18 | -0.63 | -5.48 | -6.96 | - | -0.75 | -1.65 | -1.39 | -1.69 | - | -9.31 | -9.12 | - | - | - | -5.82 | |
MA_10430954g0010 (TPS14) | -0.83 | -1.44 | -0.14 | 2.16 | 0.14 | 0.14 | 0.39 | 0.64 | 0.66 | -1.0 | - | -1.61 | -7.06 | - | -0.06 | 2.09 | -0.3 | 0.75 | -1.06 | -2.24 | 2.36 | 1.33 | 3.41 | - | - | 1.9 | - | - | - | - | -4.78 | -5.8 | -5.91 | -4.26 | -6.06 | -5.41 | -6.26 | -4.2 | -3.89 | -4.15 | -5.5 | -4.3 | 1.57 | 0.46 | -0.48 | 0.39 | 2.21 | -5.13 | -1.35 | -8.44 | - | - | - | - | - | -9.91 |
MA_10431788g0010 (TPS03) | -1.94 | -1.0 | 0.06 | 4.1 | -0.75 | -1.23 | -0.24 | 1.97 | -0.51 | -0.73 | -2.16 | 0.19 | 1.46 | 2.78 | 1.02 | 1.24 | -2.8 | -0.08 | -0.82 | -4.37 | 0.83 | 1.32 | 0.65 | - | - | 2.23 | - | - | - | - | - | - | - | - | - | - | - | -8.92 | - | - | - | - | -2.69 | -5.66 | -4.23 | -2.18 | 0.41 | -4.64 | -0.89 | - | - | - | - | - | - | - |
| 0.31 | - | - | 4.86 | - | - | - | - | 3.37 | - | - | - | - | - | -1.8 | - | - | - | - | - | - | -1.65 | -0.59 | - | - | 2.97 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -2.77 | - | -0.07 | -1.46 | 1.49 | -2.62 | 0.89 | - | - | - | - | - | - | - | |
| 2.38 | -0.73 | - | 4.18 | 2.29 | 0.49 | -0.54 | 0.79 | 0.73 | 0.31 | - | -1.34 | -1.4 | - | -1.77 | 2.62 | - | - | 0.26 | - | 0.47 | 1.23 | - | - | - | 0.41 | -0.54 | - | - | - | - | - | - | - | -0.32 | - | - | - | - | - | - | - | -2.7 | 0.61 | - | - | 1.14 | - | - | -0.67 | - | - | -0.62 | -1.72 | - | - | |
| - | - | 3.48 | 3.9 | - | - | - | 2.5 | - | - | - | - | 1.09 | 2.0 | - | - | - | - | - | - | 1.88 | 0.83 | - | - | - | 0.9 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.81 | - | 1.81 | - | 0.87 | 1.9 | - | |
| - | - | - | 4.3 | -0.62 | - | - | - | 0.13 | 2.22 | - | - | - | - | - | 3.78 | - | 2.98 | 1.86 | - | - | - | - | - | - | -1.8 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.64 | - | 0.36 | - | - | - | -2.69 | - | -0.33 | - | - | - | - | -0.78 | |
| - | - | - | 5.15 | 1.92 | - | - | - | - | - | - | 2.54 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.45 | |
| - | - | - | 5.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | 5.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | 4.44 | 1.53 | - | - | 3.05 | - | - | - | - | 3.24 | 1.57 | 2.87 | - | - | - | - | - | - | - | - | - | - | -3.49 | - | - | - | - | - | - | - | - | - | - | - | - | 1.74 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | 2.73 | - | 4.36 | 1.27 | - | - | 2.93 | - | 1.99 | - | - | - | - | - | 3.62 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.32 | - | - | - | - | - | - | - | - | - | - | - | - | |
MA_217856g0010 (UER1) | 0.08 | 0.31 | 0.28 | 2.17 | 0.29 | -0.35 | 0.78 | 0.33 | 0.09 | 1.2 | -1.17 | -0.81 | -0.37 | 0.56 | -0.34 | -0.22 | - | 1.35 | 0.39 | -2.21 | -0.04 | 0.74 | -1.01 | 1.26 | -2.43 | 0.62 | -1.14 | -3.04 | -3.02 | -2.61 | -0.04 | -0.22 | -0.07 | -0.42 | -0.44 | -0.39 | -0.58 | -0.66 | -0.39 | -0.2 | 0.03 | -0.52 | 0.66 | -0.51 | 1.46 | 0.44 | -0.07 | 0.38 | 0.76 | -1.41 | -1.39 | -1.63 | -1.91 | -1.35 | -1.28 | -1.42 |
MA_264263g0010 (MC1) | 3.0 | 0.9 | - | -1.34 | -1.73 | - | - | 1.58 | -0.17 | 1.31 | - | - | - | - | - | - | - | - | 0.51 | - | 3.58 | -1.14 | 2.67 | - | - | 2.86 | - | - | - | - | -1.58 | - | -0.35 | -0.28 | -1.33 | -0.04 | - | - | -0.27 | -0.12 | -1.37 | -1.53 | -1.8 | -0.55 | - | 0.76 | 1.37 | -1.33 | -2.35 | - | - | - | - | - | - | - |
MA_27191g0010 (JRG21) | - | - | - | 5.04 | - | - | - | 3.12 | 1.34 | - | - | - | - | 3.56 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| - | -2.34 | -0.54 | 4.88 | -0.67 | - | -0.56 | -0.82 | - | - | - | -0.38 | - | - | 1.22 | 1.56 | - | 0.5 | - | -3.37 | 1.77 | -0.38 | 2.26 | - | - | 2.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.34 | 0.54 | - | - | - | - | - | - | - | - | - | |
| - | - | - | 5.27 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.98 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.47 | 0.44 | 1.4 | 2.08 | - | - | - | - | - | |
MA_309951g0010 (GAMT2) | 1.8 | - | - | 3.64 | - | - | - | 2.51 | - | - | - | - | - | - | - | - | - | - | - | 0.66 | 1.89 | 0.84 | 3.89 | - | - | 2.5 | - | - | - | - | - | - | 0.86 | - | - | - | 1.17 | - | - | - | - | - | - | - | - | 1.03 | - | - | - | - | - | - | - | - | - | -0.64 |
| - | -3.87 | 1.71 | 4.56 | -4.14 | - | - | - | -3.39 | - | - | - | 1.02 | 2.8 | 1.43 | - | - | - | - | - | - | - | 1.8 | - | - | 1.86 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.49 | - | - | - | - | - | - | - | - | - | - | -0.92 | - | 1.32 | -0.76 | -4.63 | 2.31 | |
| - | -1.2 | 1.49 | 4.3 | -0.18 | -1.6 | 0.3 | 1.76 | -0.79 | -1.28 | -2.43 | 0.25 | 1.55 | 3.27 | 0.93 | 1.76 | - | 1.16 | -1.36 | -4.62 | 0.35 | -2.44 | -0.97 | - | - | -0.91 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -4.59 | - | - | -3.05 | -0.8 | -0.91 | -0.99 | - | - | - | - | - | - | - | |
| - | - | - | 5.55 | - | - | - | - | 1.61 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.73 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.47 | - | - | - | - | - | - | - | - | |
MA_396966g0010 (KS) | -1.7 | - | -0.57 | 4.33 | -2.07 | -2.43 | -4.05 | 2.15 | 0.29 | 0.97 | -3.79 | 0.29 | 2.08 | 2.78 | 1.38 | 0.02 | - | -0.89 | 0.78 | -4.59 | 1.55 | 0.35 | 0.79 | - | - | 0.34 | - | - | - | - | - | - | - | - | - | -6.21 | - | - | - | - | -7.02 | - | -2.54 | -6.17 | -6.84 | -2.88 | -0.36 | -5.77 | -2.42 | - | - | - | - | - | - | - |
| 3.64 | -2.2 | -0.98 | 3.59 | - | -3.59 | - | 0.23 | -6.32 | -0.85 | - | -1.82 | -2.84 | 1.69 | -0.06 | - | - | - | 0.29 | - | -0.41 | 0.9 | 1.01 | - | - | 1.45 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -2.7 | 0.09 | 1.68 | -0.25 | 0.69 | 1.41 | -1.48 | -0.85 | - | -2.1 | -0.45 | -3.3 | - | -1.37 | 1.95 | |
| - | - | -1.58 | 5.5 | - | - | - | 1.04 | -0.2 | -3.91 | - | -2.41 | - | - | 0.93 | - | - | - | 1.34 | - | -2.01 | -4.65 | - | - | - | - | - | - | - | - | -2.6 | -3.31 | -2.64 | -3.53 | -2.71 | -4.45 | -2.62 | -4.86 | -1.86 | -2.92 | -2.0 | -2.48 | -1.62 | - | - | - | -3.51 | -4.66 | -2.68 | - | - | - | - | - | - | - | |
| - | 2.22 | - | 3.25 | -1.0 | -0.95 | - | - | -0.12 | - | - | 1.63 | 0.99 | 3.6 | 1.6 | 3.53 | - | - | - | - | - | - | - | - | - | 2.03 | - | - | - | - | 0.53 | - | - | 0.15 | - | - | - | - | - | 0.13 | - | - | - | - | - | - | - | - | -1.34 | - | - | - | - | - | - | - | |
| -0.12 | -2.45 | 0.95 | 3.38 | 0.68 | -0.06 | -1.52 | 0.55 | -4.23 | -3.03 | - | -1.05 | - | - | 0.44 | 2.37 | - | 1.98 | -0.95 | -1.61 | 2.2 | 1.27 | 3.18 | - | - | 1.85 | - | - | - | - | -3.95 | -4.98 | - | -4.83 | - | -4.68 | - | -4.08 | -5.09 | -2.98 | - | -4.8 | -1.03 | -2.13 | - | -0.33 | 2.17 | -5.66 | -3.31 | - | - | - | - | - | - | - | |
MA_5583880g0010 (TPS02) | - | 0.56 | 0.78 | 3.46 | -2.2 | - | - | 2.03 | 0.68 | 0.36 | -2.73 | -0.07 | 1.33 | 2.91 | 0.03 | 0.46 | - | 1.97 | 0.57 | - | - | -0.26 | 1.03 | - | - | 2.97 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.94 | -1.0 | -1.04 | -1.05 | 1.12 | -5.12 | -0.32 | - | - | - | - | - | - | - |
MA_61045g0010 (MC1) | 1.46 | 0.72 | -2.23 | - | - | - | - | -3.25 | -1.03 | -0.62 | - | -3.06 | -3.02 | - | - | - | - | - | 0.06 | - | 2.88 | 0.7 | 1.66 | 1.09 | - | 1.95 | -2.26 | -1.36 | -2.5 | - | -0.23 | 0.17 | -0.42 | 0.52 | 0.5 | -0.84 | 0.81 | -0.02 | 0.05 | -0.56 | -0.12 | 0.12 | 0.49 | -1.34 | -2.73 | 1.62 | 3.45 | -0.59 | -0.54 | - | - | - | - | - | - | - |
| -0.06 | -2.17 | -0.18 | 3.01 | -0.27 | -1.8 | - | 0.63 | -0.28 | -0.56 | - | -0.78 | - | - | 0.65 | 1.51 | - | -0.07 | -0.09 | -1.06 | 2.47 | 1.39 | 3.34 | - | - | 1.87 | - | - | - | - | -5.55 | -5.43 | - | - | - | - | - | - | -5.1 | -4.02 | - | - | 1.62 | 0.14 | 0.23 | 0.5 | 2.18 | -4.68 | -0.04 | - | - | - | - | - | - | - | |
| - | -2.96 | 1.1 | 4.53 | 0.54 | -0.9 | 1.57 | -0.93 | -5.93 | - | -2.49 | -1.13 | 1.19 | 2.73 | 0.35 | 2.51 | - | 1.97 | - | -5.4 | -1.34 | -0.66 | -0.88 | - | - | 1.03 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -4.95 | -6.38 | -3.82 | -2.79 | -0.45 | - | -6.33 | - | - | - | - | - | - | -7.0 | |
| - | - | - | 4.27 | - | - | - | - | - | 1.16 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.72 | - | - | - | - | - | - | - | - | - | 3.95 | - | - | 3.07 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.88 | - | |
| - | - | - | 5.45 | - | - | - | - | - | - | - | 3.63 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 2.19 | -1.84 | 0.12 | -0.1 | 0.06 | 0.55 | -0.54 | -0.38 | -2.09 | -4.83 | -2.65 | -2.05 | -0.28 | 1.47 | -0.2 | 1.05 | -5.67 | -1.95 | -4.12 | -5.55 | 4.11 | -1.01 | 3.79 | - | - | 1.26 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -4.82 | -6.99 | - | 0.52 | 1.07 | -7.4 | -6.7 | - | - | - | - | - | - | - | |
| - | - | 2.58 | 4.45 | 1.93 | 0.66 | - | -0.11 | 2.14 | 0.31 | - | 0.02 | 1.35 | 2.48 | 1.08 | - | - | 1.07 | -0.74 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -2.07 | -2.64 | - | -0.62 | - | - | - | - | -1.8 | - | -1.92 | - | -0.74 | - | |
MA_81834g0010 (TBL36) | -0.35 | -2.05 | - | 4.49 | - | -2.64 | - | 0.22 | -0.14 | -4.45 | 1.02 | -0.35 | -2.69 | -3.35 | 2.35 | - | - | - | -4.88 | -1.31 | -0.26 | -0.53 | - | - | - | 1.15 | - | - | - | - | -3.55 | -1.35 | 0.32 | -1.15 | -0.64 | -0.75 | -1.5 | -0.31 | -2.65 | -0.0 | -0.04 | -1.28 | -0.75 | -1.0 | 0.34 | -0.51 | -0.76 | 0.76 | 1.96 | - | - | - | - | - | - | 0.52 |
| - | - | - | 5.57 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.1 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | 3.92 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.37 | - | 4.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| -2.3 | -7.16 | -1.59 | 3.21 | -1.43 | 0.83 | 1.13 | -0.61 | -5.32 | -1.99 | -1.41 | -0.81 | 0.41 | 3.44 | 0.53 | 2.67 | - | 0.88 | -1.76 | -4.39 | 0.48 | 0.13 | 1.05 | - | - | 1.98 | - | - | - | - | -3.2 | -3.67 | -3.74 | -3.13 | -2.53 | -3.53 | -3.07 | -3.11 | -3.63 | -2.65 | -2.96 | -4.76 | -0.22 | -1.37 | -0.65 | -0.65 | 0.08 | 0.52 | 1.56 | - | -5.68 | -4.82 | - | - | -3.75 | - | |
| - | - | - | 4.99 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.6 | - | |
MA_9153751g0010 (OMT1) | - | - | - | 4.85 | - | - | - | -2.01 | 0.9 | 0.84 | - | -2.84 | -0.46 | 1.47 | 0.11 | - | - | - | 0.57 | - | - | -2.88 | - | - | - | 1.66 | - | - | - | - | 1.09 | 0.05 | 0.11 | 0.86 | -2.63 | -0.52 | -1.12 | 0.04 | -0.52 | 0.72 | 1.0 | -1.77 | -1.4 | -4.1 | - | - | - | -4.4 | -3.51 | - | - | - | - | - | - | -2.32 |
| - | - | 2.79 | 5.62 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.