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Heatmap: Cluster_113 (HCCA)

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(Showing raw values)

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Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
0.89 0.83 0.19 0.0 0.0 0.0 0.0 1.15 9.24 51.58 2.14 0.98 1.08 1.44 1.05 0.0 0.0 0.0 63.87 1.17 5.34 0.93 1.91 1.23 1.86 3.21 0.38 1.76 1.12 0.86 3.18 1.47 2.61 3.08 1.32 1.88 2.1 2.02 1.61 3.0 2.01 1.2 13.02 6.92 15.89 6.27 1.62 4.39 4.61 5.58 7.04 10.26 5.23 6.02 7.46 2.56
9.57 9.81 0.15 1.33 0.14 1.01 1.51 12.1 17.81 136.06 6.95 8.32 17.13 5.96 6.63 0.12 0.0 0.64 159.69 8.72 15.46 9.68 14.36 15.91 5.86 12.92 6.28 8.36 7.02 9.7 23.36 24.54 22.84 26.82 20.62 19.7 21.24 30.45 26.57 27.51 27.49 17.2 14.88 13.03 9.43 13.69 13.86 23.86 24.36 51.46 39.14 48.34 49.9 39.27 60.15 24.01
16.04 21.24 11.66 17.23 12.55 18.56 22.57 22.53 60.61 191.0 37.52 29.34 43.06 42.15 27.8 11.89 0.0 22.98 180.62 11.04 23.09 17.22 19.45 20.46 9.98 29.28 12.33 9.65 10.24 11.73 57.16 59.28 54.45 62.48 53.53 48.92 52.49 67.74 64.9 67.96 58.24 40.84 33.74 27.6 21.86 22.03 22.09 45.63 45.65 51.01 50.31 57.92 56.28 48.54 59.69 60.79
28.03 54.0 1.44 4.86 1.63 2.71 4.94 12.35 60.52 321.06 5.28 9.15 26.08 8.94 8.93 2.89 0.0 8.22 275.65 38.85 27.48 17.42 29.3 45.83 39.39 52.2 58.45 44.7 46.05 44.2 98.67 103.51 105.13 115.56 106.17 98.84 100.98 112.28 103.59 99.13 105.56 81.97 18.59 8.25 5.24 22.85 28.76 35.88 41.12 89.06 57.61 48.64 73.99 77.71 37.34 81.25
19.23 12.73 8.59 15.6 11.77 14.85 19.58 19.41 33.36 113.62 9.64 16.26 27.14 17.82 19.0 11.7 0.61 18.19 113.43 14.38 26.01 13.2 19.94 28.48 21.22 17.42 16.75 14.68 13.1 17.2 31.03 29.45 31.36 31.85 26.73 28.82 30.75 33.23 34.94 29.91 38.0 22.15 41.53 27.91 36.06 21.4 22.41 23.89 28.93 28.81 38.97 43.97 37.79 24.27 37.62 22.64
12.21 11.87 0.66 2.03 0.78 0.58 0.75 12.73 19.47 45.15 8.89 9.1 17.16 4.32 8.17 1.57 0.0 2.0 50.66 9.05 14.79 9.42 14.71 14.36 11.0 12.95 10.12 8.37 9.76 11.15 21.06 17.35 21.45 23.81 21.83 20.62 19.68 25.39 22.3 21.58 23.77 15.38 30.74 27.25 28.13 14.68 9.02 11.83 12.87 13.38 15.86 18.37 13.81 11.25 16.93 14.03
0.92 2.42 0.0 0.08 0.0 0.0 0.0 0.95 0.68 6.72 1.17 0.58 0.96 0.72 0.47 0.0 0.0 0.0 8.18 0.4 0.9 0.88 1.02 1.19 0.38 0.77 0.31 0.33 0.26 0.39 0.78 0.92 0.92 1.04 0.63 0.73 0.88 0.95 0.99 1.27 0.92 0.91 0.69 0.74 1.18 1.98 0.79 0.97 0.96 1.01 1.63 1.96 1.18 0.84 1.52 1.82
4.03 6.22 0.0 0.16 0.02 0.0 0.0 4.77 3.4 41.66 1.59 4.82 4.82 5.96 5.85 0.0 0.0 0.0 47.12 0.64 3.67 1.83 1.35 2.13 1.34 3.6 0.4 1.25 1.14 1.0 4.29 4.84 5.32 5.92 5.57 5.66 6.07 6.39 6.73 7.09 6.5 5.15 3.45 3.14 4.76 5.08 1.95 3.87 4.32 4.66 7.76 8.78 5.46 5.32 7.18 12.83
8.96 24.99 1.76 6.51 3.75 2.91 2.19 11.63 9.66 50.9 9.41 10.41 12.1 15.05 9.93 0.65 0.0 3.2 56.31 3.53 12.03 10.08 8.23 6.54 5.83 6.73 2.91 3.29 2.89 3.23 9.67 9.47 10.15 10.98 10.35 9.0 10.41 10.72 11.64 11.5 11.3 8.59 5.23 4.47 11.14 14.59 7.49 7.81 8.44 8.19 12.42 13.61 9.15 7.61 11.05 20.27
1.51 0.58 0.0 0.0 0.0 0.0 0.0 2.62 0.77 5.34 0.0 0.22 0.44 0.24 0.27 0.31 0.0 0.0 4.83 0.09 3.71 0.14 3.04 0.26 0.08 0.42 0.28 0.18 0.16 0.0 1.04 0.89 1.17 0.97 0.59 1.36 1.33 1.33 1.16 1.3 1.3 0.65 1.01 0.83 0.84 1.16 0.91 0.6 0.47 0.51 1.06 1.46 0.37 0.55 2.39 0.49
7.3 7.9 0.0 0.06 0.0 0.0 0.0 3.74 2.48 21.29 0.0 0.91 1.22 0.46 0.86 0.0 0.0 0.0 18.65 1.86 5.92 6.82 4.65 2.87 4.2 2.73 2.67 3.27 3.72 2.9 2.66 3.25 3.88 3.39 3.12 3.35 3.44 4.67 3.02 3.38 3.46 2.62 6.74 4.03 6.65 7.16 2.85 3.17 3.27 4.0 6.8 5.97 3.86 3.84 7.04 2.84
22.74 17.56 4.48 11.25 4.96 8.42 13.65 22.1 27.42 146.69 15.99 23.9 65.77 25.07 22.96 23.94 0.0 16.97 129.85 23.09 47.02 28.15 20.15 31.81 16.84 26.99 33.96 16.16 10.9 21.68 33.89 28.96 36.99 37.9 32.55 33.6 30.04 34.16 30.33 33.2 45.49 24.67 32.75 24.89 34.17 32.25 28.94 21.57 25.2 20.39 36.22 59.24 29.61 29.26 66.77 8.24
51.56 53.71 6.76 26.9 7.54 4.58 1.8 61.11 65.64 302.64 21.21 39.99 66.58 43.13 42.61 6.43 0.0 5.07 283.33 38.21 48.25 50.95 51.19 67.07 52.85 51.85 45.5 47.33 48.75 48.73 77.3 89.4 90.16 94.27 80.73 76.8 82.76 82.89 76.93 71.74 89.12 64.78 51.04 45.02 43.17 49.76 53.94 53.27 56.0 75.62 83.2 73.17 72.68 71.53 85.52 64.74
43.3 5.02 0.0 0.16 0.0 0.0 0.0 1.93 12.28 61.46 0.0 0.4 0.34 0.01 0.58 0.25 0.0 0.0 68.3 1.41 17.48 24.4 4.21 10.53 6.35 2.77 1.55 2.17 1.69 1.15 7.76 7.79 7.99 8.21 7.51 5.16 5.98 6.65 6.59 8.3 9.39 4.76 30.23 19.62 21.15 60.88 24.82 5.14 8.49 5.55 14.78 23.08 8.77 5.52 19.95 0.47
7.44 2.64 0.0 0.19 0.02 0.0 0.0 3.66 12.59 64.54 0.71 1.1 2.97 0.0 1.39 0.0 0.0 0.0 59.51 0.79 6.9 3.69 4.19 5.21 1.98 2.94 0.68 0.87 1.22 0.54 12.69 13.12 16.41 13.81 13.52 10.28 10.86 14.05 10.71 12.59 12.55 9.68 8.48 6.02 4.34 6.16 5.53 4.85 5.58 7.39 13.28 14.41 7.64 5.76 21.67 1.44
60.78 155.57 0.11 0.46 0.1 0.08 0.0 21.95 72.94 804.09 4.9 14.16 34.96 9.55 13.81 0.6 0.0 0.29 673.83 58.95 57.39 51.47 51.89 85.68 94.22 92.16 81.05 101.37 95.9 98.29 197.15 221.58 222.77 244.35 210.92 195.03 215.73 246.75 215.6 205.66 210.64 165.44 34.52 17.12 11.65 44.66 50.22 81.47 89.94 177.79 119.11 95.87 147.61 160.26 78.51 202.26
9.52 20.85 0.06 0.34 0.28 0.36 0.08 4.76 17.66 107.35 1.36 2.7 6.24 1.67 2.77 0.05 0.0 0.15 89.92 11.46 10.62 7.49 9.35 15.6 14.05 17.82 17.87 14.71 15.83 15.51 37.49 39.89 39.47 44.38 40.76 37.19 37.82 41.21 38.67 36.3 40.6 31.44 7.36 3.61 2.41 9.02 9.55 14.65 16.48 25.95 16.89 14.05 21.53 23.31 11.7 30.17
12.29 10.57 1.72 2.72 1.48 1.29 1.2 12.45 18.82 54.82 3.8 6.28 11.63 6.4 6.89 2.11 0.0 3.07 44.62 6.08 14.64 8.32 12.3 7.59 7.49 10.73 6.72 7.26 7.0 6.82 14.17 12.93 14.15 15.68 13.81 13.46 13.1 16.95 14.42 14.73 16.29 10.66 24.6 16.6 18.77 13.73 6.83 8.83 10.36 13.83 24.33 22.19 14.67 12.43 22.3 12.46
24.19 21.22 5.48 14.33 5.25 3.15 6.82 28.68 35.74 353.26 8.08 10.56 17.27 23.03 14.34 14.11 0.0 13.85 378.31 19.2 78.29 17.46 29.81 41.97 23.28 14.26 18.24 22.66 26.45 24.8 46.92 40.54 43.09 46.09 39.01 38.71 42.35 55.3 59.91 63.6 73.67 34.23 38.47 26.14 28.43 43.94 24.16 39.72 33.91 107.63 116.31 132.13 103.58 109.37 147.51 67.77
17.71 11.48 0.24 1.19 0.16 0.16 0.0 12.77 11.42 47.46 1.77 9.07 18.12 6.95 9.77 0.22 0.0 0.19 43.81 6.27 13.15 10.41 15.79 5.18 10.67 9.55 6.83 7.87 6.85 7.84 11.57 12.91 13.4 13.5 11.68 11.32 13.25 14.38 12.38 11.48 13.66 9.82 14.54 10.35 19.17 12.74 7.65 7.98 9.3 8.54 11.07 11.98 9.13 8.28 11.1 12.81
15.01 9.89 0.87 2.13 0.63 0.24 0.0 22.23 32.62 129.65 1.12 7.3 7.54 6.74 8.23 0.61 0.0 0.48 139.56 19.93 50.39 12.03 17.54 10.61 12.62 13.44 10.28 6.45 5.98 8.12 22.23 20.66 27.52 22.74 21.07 20.59 20.21 22.24 16.53 21.28 15.76 16.08 89.11 52.7 61.42 50.44 23.87 18.09 18.3 4.76 8.02 7.8 4.44 4.98 17.04 3.21
11.97 5.42 0.02 0.89 0.41 1.6 5.16 3.14 67.71 296.41 0.0 4.36 11.37 3.82 4.28 9.83 0.0 10.39 215.34 28.41 21.04 13.32 21.31 27.57 48.2 6.79 39.7 34.13 23.87 30.94 18.44 24.65 28.09 31.86 30.62 22.31 21.45 23.91 22.24 24.9 24.0 18.23 7.08 3.75 1.94 7.68 23.93 15.23 14.76 19.0 73.44 65.69 17.03 16.66 92.86 19.16
0.9 0.38 0.0 0.06 0.03 0.0 0.09 1.62 6.55 34.26 11.2 5.12 5.73 3.42 2.74 0.14 0.0 0.08 31.52 1.36 1.94 0.54 0.34 1.27 1.22 3.46 1.63 0.64 0.82 1.55 5.69 3.99 5.37 6.68 6.28 7.66 5.95 5.95 6.37 5.12 6.98 4.07 3.65 3.05 3.66 0.58 0.64 4.58 5.41 3.27 3.61 4.41 3.62 3.26 5.5 3.96
0.9 0.38 0.0 0.06 0.03 0.0 0.09 1.62 6.55 34.26 11.2 5.12 5.73 3.42 2.74 0.14 0.0 0.08 31.52 1.36 1.94 0.54 0.34 1.27 1.22 3.46 1.63 0.64 0.82 1.55 5.69 3.99 5.37 6.68 6.28 7.66 5.95 5.95 6.37 5.12 6.98 4.07 3.65 3.05 3.66 0.58 0.64 4.58 5.41 3.27 3.61 4.41 3.62 3.26 5.5 3.96
14.21 30.24 7.88 16.65 4.49 2.6 1.12 15.74 10.81 125.1 19.29 19.1 19.39 14.75 25.19 1.35 7.54 5.18 187.62 6.09 26.82 13.76 9.97 6.16 6.1 21.42 6.55 5.68 4.62 5.39 18.29 17.39 18.37 19.95 18.58 18.03 19.07 21.89 18.59 19.87 19.9 15.76 12.86 7.65 14.78 25.13 14.25 14.53 13.67 22.82 28.31 31.02 22.7 20.9 33.57 43.94
0.1 0.07 0.06 0.16 0.13 0.13 0.0 0.11 0.89 12.41 0.17 0.2 0.1 0.44 0.07 0.01 0.0 0.0 16.13 0.33 0.16 0.02 0.15 0.17 0.13 0.32 0.18 0.27 0.22 0.16 0.46 0.35 0.29 0.31 0.32 0.27 0.39 0.47 0.3 0.92 0.58 0.28 0.1 0.08 0.02 0.05 0.19 0.08 0.12 2.89 4.45 4.47 3.11 4.35 4.01 0.11
40.82 27.35 2.76 5.43 4.11 2.75 3.85 32.07 41.88 94.96 10.6 22.36 37.05 19.11 23.57 4.56 0.0 5.43 75.93 11.75 28.62 33.25 23.98 17.13 14.26 35.25 11.71 13.38 14.2 11.47 37.91 30.8 39.92 41.58 35.02 35.71 32.41 44.89 40.95 38.98 45.75 27.38 37.91 24.76 35.24 32.22 30.33 26.25 30.82 26.23 43.55 46.15 28.67 24.95 43.65 28.32
2.61 0.91 0.0 0.21 0.0 0.0 0.0 5.14 3.41 20.21 0.0 0.83 2.03 1.35 0.8 0.11 0.0 0.0 18.91 0.18 8.02 0.31 5.71 0.06 0.87 0.96 0.14 0.19 0.18 0.19 2.11 1.8 2.54 2.76 1.54 2.81 1.79 2.74 2.22 2.69 3.53 2.2 6.86 4.71 4.23 2.47 1.33 3.66 3.5 1.25 2.1 3.11 1.36 1.24 7.61 2.01
15.67 8.88 1.07 3.89 0.85 0.58 0.65 13.43 11.83 116.51 2.25 4.66 8.51 5.07 6.61 0.68 0.0 1.69 108.85 6.08 19.12 11.57 13.27 7.41 8.39 14.35 6.65 6.73 5.67 5.81 22.93 22.46 19.17 18.39 16.85 14.96 16.68 18.37 15.8 21.52 26.17 11.8 33.82 16.51 21.07 16.95 14.44 12.1 11.02 22.37 23.41 21.74 22.12 24.32 27.36 17.93
49.41 55.35 15.32 28.36 12.47 12.81 13.71 74.31 51.03 164.22 24.7 31.58 56.25 32.45 32.53 13.68 0.0 28.36 158.8 37.89 57.4 41.62 54.21 41.07 58.23 33.05 42.81 36.79 40.68 40.62 49.49 51.58 52.94 59.21 55.79 53.26 54.49 57.24 58.92 55.21 54.36 45.64 78.25 56.47 42.04 54.88 59.29 41.34 42.43 41.89 53.77 58.49 48.43 36.77 49.88 17.02
11.03 6.78 0.5 1.71 0.33 0.09 0.66 7.16 18.29 48.4 1.21 2.16 6.48 6.17 3.11 0.16 0.0 0.57 56.06 8.76 10.86 10.19 10.09 6.83 8.66 14.02 9.6 10.07 7.77 8.65 18.35 14.35 19.37 21.64 19.43 16.45 15.92 20.34 16.11 20.0 21.26 13.37 22.83 16.83 13.05 13.42 9.86 8.63 9.62 15.78 10.54 11.39 15.19 13.37 17.59 13.17
MA_41251g0030 (UBQ10)
 29.45 43.32 26.8 34.95 23.86 18.89 12.78 60.76 51.16 310.6 27.26 48.54 65.37 31.18 50.55 20.9 0.43 32.7 309.51 34.8 64.64 28.49 41.36 52.84 56.84 44.66 37.96 38.06 33.24 37.62 111.86 113.58 100.79 86.81 78.36 77.2 91.9 101.06 111.69 111.48 116.45 53.77 46.25 34.25 34.62 51.38 44.37 41.33 44.17 51.17 63.21 64.54 52.22 44.93 59.86 46.75
7.3 4.33 0.0 0.17 0.1 0.0 0.0 9.21 7.01 21.11 0.19 5.71 9.55 2.51 7.87 0.0 0.0 0.08 20.64 2.36 5.09 4.22 4.2 3.29 3.06 5.8 1.63 2.24 2.31 2.67 8.27 7.5 9.25 8.82 8.21 8.44 7.07 9.85 7.87 8.33 9.31 7.03 9.92 7.76 6.26 6.33 6.1 4.59 5.59 8.25 9.94 9.34 9.13 7.36 11.32 7.92
MA_43386g0010 (NFXL1)
 5.64 6.43 0.97 1.49 1.62 0.82 0.4 4.39 6.2 22.7 1.8 2.36 4.29 1.9 3.44 0.58 0.0 0.98 28.38 2.98 4.14 4.66 3.72 3.69 3.94 6.19 3.36 3.57 4.0 3.23 10.04 7.89 8.44 7.79 7.52 9.26 8.25 10.88 10.17 9.59 12.06 6.54 10.63 5.2 8.25 5.09 3.95 4.36 4.88 5.63 6.59 5.82 5.11 4.47 5.49 6.78
4.68 2.66 0.74 2.95 0.37 0.31 0.0 4.65 3.05 17.96 0.13 0.96 1.42 1.14 1.52 1.37 0.0 0.45 18.25 4.52 12.1 3.22 3.52 3.03 1.82 2.22 2.26 2.25 1.2 1.84 2.12 2.43 2.67 2.84 2.75 2.5 2.27 1.94 2.07 2.11 2.23 1.5 8.11 5.29 8.77 10.58 6.45 2.05 2.32 0.78 1.43 1.42 0.98 1.0 2.57 0.49
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.9 14.55 1.36 0.66 1.26 0.61 0.45 0.0 0.0 0.0 19.43 0.11 0.23 0.06 0.12 0.43 0.1 0.47 0.23 0.54 0.1 0.0 1.3 1.41 1.04 1.06 1.06 1.07 1.15 1.57 0.81 1.02 1.4 0.76 3.1 2.25 2.57 0.31 0.12 0.99 1.09 0.99 1.72 2.39 0.98 1.31 1.51 0.57
47.94 38.35 4.35 7.13 2.73 0.97 2.46 38.37 35.12 202.18 15.43 27.57 35.79 12.69 29.37 2.41 0.0 3.01 185.01 24.77 46.0 29.15 30.25 40.99 53.07 33.76 29.96 32.71 28.11 30.69 67.54 76.88 54.41 59.62 48.42 44.1 58.49 59.42 68.56 68.42 72.47 34.27 34.05 22.94 18.61 42.1 31.96 38.91 41.65 60.52 79.97 81.2 62.52 58.1 76.61 41.3
18.4 10.61 7.32 14.8 9.28 2.44 0.0 21.16 40.24 219.63 12.89 29.15 39.23 16.41 24.82 10.11 0.0 8.84 202.04 20.76 28.65 16.22 14.27 37.35 59.88 36.82 20.72 28.96 25.46 28.2 85.62 93.2 72.84 82.21 67.73 74.24 88.76 79.86 90.97 104.74 98.15 49.99 43.8 37.18 38.16 30.87 26.2 34.57 37.56 47.82 41.96 47.74 48.8 37.4 41.31 39.56
MA_6119g0010 (SYP124)
 2.5 2.79 2.4 2.22 2.34 1.18 2.85 4.08 4.46 25.8 4.17 2.41 2.44 4.27 2.34 0.71 0.04 2.82 25.12 2.05 6.96 2.63 1.58 4.44 3.1 2.68 2.37 1.81 2.33 2.33 2.8 2.47 2.12 1.96 1.94 2.33 2.18 1.99 1.93 2.5 3.14 1.75 1.47 0.82 1.01 5.32 3.82 3.64 3.59 6.24 6.35 5.96 7.16 7.04 5.36 2.99
0.02 0.14 0.0 0.0 0.0 0.0 0.0 0.07 0.09 3.17 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.0 3.06 0.08 0.26 0.13 0.04 0.12 0.14 0.56 0.09 0.28 0.22 0.3 0.35 0.29 0.37 0.33 0.27 0.4 0.34 0.43 0.35 0.35 0.22 0.22 0.42 0.31 0.39 0.14 0.11 0.14 0.17 0.2 0.17 0.2 0.08 0.17 0.32 0.27
2.78 2.58 1.53 0.84 1.14 0.73 0.63 4.42 11.42 63.94 8.6 5.83 9.99 4.96 3.39 1.33 0.0 0.34 76.93 3.19 14.93 2.33 11.51 4.02 2.13 8.3 2.27 3.79 2.77 3.29 12.89 14.42 12.69 12.18 14.72 11.07 15.42 17.68 14.49 15.43 14.48 11.42 24.88 13.54 22.88 14.71 6.98 7.87 9.34 9.33 15.2 20.3 12.39 14.49 16.66 9.35
4.33 2.81 0.0 0.38 0.65 0.08 0.0 7.19 1.89 19.72 0.0 0.27 1.47 0.75 0.86 0.65 0.0 0.0 18.56 0.38 14.85 1.27 12.49 0.45 0.86 1.07 0.0 0.22 0.2 0.29 1.51 0.97 1.72 1.9 1.57 2.35 1.64 1.49 1.14 1.53 2.25 1.3 5.68 3.62 3.61 5.05 2.24 3.22 2.86 1.31 3.24 4.04 1.63 1.62 9.87 1.65

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)