- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA_429079g0010 (HISN2) | 0.59 | -0.55 | -1.3 | -1.1 | -2.29 | -4.29 | - | -0.46 | 0.22 | -0.46 | -0.3 | -0.5 | 0.43 | -0.78 | -0.87 | -1.42 | - | -1.17 | -0.11 | -0.12 | -0.42 | -0.26 | -0.68 | -0.29 | -0.34 | 0.14 | -0.39 | -0.54 | -0.6 | -1.09 | 0.38 | 0.74 | 0.58 | 0.25 | 0.23 | 0.7 | 0.47 | 0.34 | 0.37 | 0.28 | 0.76 | 0.67 | 0.35 | 0.17 | 1.32 | -0.49 | -0.5 | 0.52 | 0.53 | 0.5 | 0.41 | 0.54 | 0.39 | 0.05 | 0.88 | 0.5 |
| 0.16 | -0.9 | -1.27 | -0.56 | -2.12 | -1.4 | - | -0.67 | -0.19 | 0.14 | 0.11 | -0.73 | -0.14 | -1.76 | -0.67 | -0.59 | - | -3.78 | 0.17 | -0.73 | -0.8 | -0.34 | -0.9 | -0.82 | -1.78 | 0.12 | -1.29 | -0.14 | -1.15 | -0.44 | 0.1 | 0.61 | 0.23 | 0.54 | -0.79 | 0.57 | 0.56 | -0.49 | -0.06 | -0.06 | 0.45 | 0.05 | 0.49 | 0.37 | 1.26 | -0.35 | -1.06 | 0.67 | 0.7 | 0.88 | 1.14 | 1.19 | 0.86 | 0.63 | 1.63 | 0.63 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.