- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -1.79 | -2.9 | -3.42 | -2.18 | -4.12 | -5.92 | - | -2.27 | -0.8 | -0.32 | -0.39 | -2.51 | -1.25 | -0.1 | -1.85 | -4.33 | - | -2.02 | 0.1 | 0.86 | -1.69 | -1.06 | -1.02 | -0.13 | 0.72 | 0.29 | 1.15 | 0.87 | 0.82 | 1.06 | 1.19 | 0.82 | 1.04 | 1.33 | 1.45 | 1.08 | 1.34 | 0.82 | 1.08 | 0.89 | 1.29 | 0.86 | -1.18 | -1.49 | -0.58 | -2.1 | -0.54 | -0.4 | -0.23 | -0.69 | -0.16 | -0.36 | -0.41 | -0.79 | -0.42 | -0.88 | |
MA_57846g0010 (SGB1) | -1.24 | -1.35 | - | -4.41 | -2.3 | - | - | -1.54 | -1.14 | -0.15 | -0.84 | -3.34 | -2.21 | -0.58 | -3.08 | - | - | -3.44 | 0.13 | 0.38 | -1.14 | -0.05 | -0.45 | -0.01 | 0.87 | 0.07 | 0.06 | 1.4 | 0.86 | 1.27 | 1.0 | 1.23 | 1.32 | 1.32 | 1.3 | 1.12 | 1.23 | 0.93 | 0.79 | 0.8 | 1.0 | 0.63 | -1.02 | -0.22 | -0.01 | -1.38 | -0.37 | -0.47 | -0.4 | -0.34 | -0.48 | -0.22 | -0.36 | -0.69 | -0.38 | -1.26 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.