- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -1.55 | - | - | - | - | - | - | - | -0.39 | -1.64 | - | - | - | - | - | - | - | - | -0.05 | 2.8 | 1.0 | 0.72 | -0.95 | 2.1 | 2.06 | -0.62 | 2.88 | 2.3 | 2.17 | 3.18 | -2.93 | -2.91 | -1.01 | -2.36 | -0.5 | -2.1 | -1.11 | -1.37 | -2.9 | -2.93 | - | -2.04 | -3.33 | - | -2.11 | -1.43 | 0.8 | -1.66 | -1.15 | -2.72 | -2.37 | - | -3.22 | - | -1.27 | -2.93 | |
MA_93382g0010 (MT3) | -3.11 | -1.07 | -11.7 | -11.24 | -12.25 | -11.79 | -8.14 | -6.35 | 0.63 | -1.95 | - | -13.57 | -10.96 | -9.68 | -13.96 | -5.66 | - | -8.8 | -2.79 | 2.42 | -1.86 | -1.14 | -1.11 | 2.77 | 2.63 | -0.81 | 2.53 | 2.34 | 2.84 | 2.51 | -0.78 | -0.77 | -0.67 | -0.55 | -0.97 | -0.57 | -0.63 | -0.78 | -0.56 | -0.72 | -0.65 | -0.8 | -3.79 | -4.27 | -8.34 | -3.16 | -0.91 | -0.91 | -1.3 | -3.95 | -2.75 | -2.92 | -4.43 | -5.42 | -3.83 | -11.43 |
| -1.86 | -2.51 | - | -5.13 | - | - | - | -2.58 | -0.01 | -2.45 | -3.88 | -5.04 | -4.04 | -6.13 | -3.44 | - | - | - | -1.24 | 2.39 | 0.19 | 0.62 | -0.34 | 2.2 | 1.77 | -0.16 | 2.33 | 2.65 | 2.5 | 2.66 | -1.66 | -1.64 | -0.78 | -0.9 | -0.36 | -0.8 | -0.42 | -0.67 | -1.66 | -2.17 | -3.06 | -1.59 | -0.07 | -1.47 | -0.62 | -0.33 | 0.6 | -1.26 | -0.59 | -3.21 | -2.12 | -1.81 | -2.45 | -2.71 | -0.52 | -3.24 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.