View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
- | - | - | - | - | 3.92 | - | - | - | 1.01 | - | 3.85 | 1.22 | - | 2.52 | - | - | - | -1.27 | 0.95 | - | - | - | - | - | - | - | - | - | - | -0.25 | - | - | 2.23 | - | - | - | - | - | 1.3 | 1.52 | - | - | - | - | - | - | - | - | - | - | - | 0.7 | 0.68 | - | - | |
- | - | 1.92 | 2.25 | 0.78 | 2.7 | 4.6 | - | - | - | - | 0.59 | - | - | -0.33 | 3.41 | - | - | -1.12 | - | - | - | - | - | - | -3.66 | - | - | - | - | - | - | - | - | - | - | - | -0.45 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.26 | - | - | - | |
- | - | 3.19 | 2.76 | 1.59 | 1.86 | - | - | - | 0.93 | - | 0.6 | -1.02 | -0.64 | -1.39 | 4.07 | - | 2.68 | 0.97 | - | -0.15 | - | - | - | 0.68 | -4.35 | - | - | - | - | - | - | - | - | - | - | - | -1.51 | - | - | - | - | -1.57 | - | - | - | - | -3.72 | -2.78 | - | - | - | - | - | - | - | |
- | - | - | - | 3.62 | 3.78 | - | - | - | - | - | 4.47 | - | - | 1.72 | - | - | - | 2.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | 2.22 | 3.64 | - | - | - | 3.44 | - | 1.91 | - | - | - | - | - | - | 3.95 | - | - | - | - | - | - | -1.29 | - | - | - | - | - | - | - | - | - | 0.51 | - | - | - | - | 1.07 | - | - | - | - | - | - | - | - | 1.66 | - | - | - | - | 0.74 | - | |
- | - | 0.64 | 2.49 | 1.44 | 2.15 | 4.63 | - | -4.03 | - | - | 0.62 | - | - | -2.39 | 3.05 | - | -0.64 | - | - | - | - | - | - | - | -0.06 | - | - | - | - | - | -2.5 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -2.17 | -0.21 | 0.1 | -0.54 | 0.12 | 0.12 | - | |
- | - | - | - | - | 4.29 | - | - | - | - | - | 2.91 | 3.97 | 2.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.41 | - | - | - | - | - | - | - | - | - | - | - | 1.35 | - | 1.65 | - | - | - | - | |
- | - | - | -1.42 | -0.84 | 3.2 | - | - | -0.97 | 3.8 | - | 1.16 | -1.24 | -1.8 | - | - | - | - | 3.47 | -1.31 | - | - | - | - | - | -0.16 | 1.21 | - | - | - | -0.07 | -0.51 | - | -0.36 | - | -0.22 | -1.09 | 0.66 | -0.23 | -0.94 | -0.77 | - | 0.01 | -2.4 | - | 0.22 | - | -3.93 | -1.47 | - | 0.19 | -1.39 | -0.38 | 0.29 | - | -2.86 | |
- | - | - | - | 2.03 | 3.36 | - | - | -2.62 | 2.85 | - | - | - | 3.5 | 3.09 | - | - | - | 2.01 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.67 | - | - | 2.86 | - | - | - | |
- | - | - | 2.86 | - | 2.87 | - | - | - | 3.61 | - | - | - | - | - | - | - | - | 3.69 | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.27 | - | 1.55 | - | - | - | - | - | - | - | - | - | - | - | - | -0.93 | - | 1.14 | - | 1.23 | - | - | 1.38 | -0.27 | |
- | - | - | - | 3.56 | 3.28 | - | - | - | - | - | - | 3.63 | 4.29 | - | - | - | - | 1.03 | - | - | - | - | - | - | -0.78 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | - | 4.39 | - | - | - | - | - | 4.36 | - | 3.86 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | 2.25 | 3.14 | - | - | -2.68 | 2.02 | - | 1.48 | 2.7 | 3.61 | 1.81 | - | - | 2.85 | 0.82 | - | - | - | - | - | - | -2.27 | - | - | - | - | -1.55 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.47 | - | - | - | -0.62 | 0.72 | - | |
- | - | - | -0.83 | - | 3.68 | - | - | - | 2.9 | 2.02 | 1.34 | 2.33 | - | 0.93 | - | - | - | 3.31 | - | - | - | - | - | - | -2.62 | - | - | - | - | - | - | - | - | - | - | - | 1.05 | 0.89 | - | 2.28 | - | 0.95 | - | - | - | - | - | - | - | - | - | - | - | - | -0.42 | |
- | - | - | - | - | 4.68 | - | - | - | - | - | 4.65 | - | - | - | - | - | - | 2.44 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | 1.61 | 2.38 | - | - | -2.99 | 4.33 | - | - | - | - | - | - | - | - | 3.68 | - | - | - | - | - | - | 0.56 | - | - | - | - | - | 0.03 | - | - | - | - | - | - | - | 0.47 | - | - | - | - | 0.69 | 0.1 | 2.26 | - | - | 0.1 | - | - | - | 0.17 | 0.21 | - | |
- | - | 3.5 | - | 1.65 | 3.69 | - | - | -0.93 | - | - | 4.64 | - | - | - | - | - | - | 0.45 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.87 | - | - | - | - | - | - | - | |
- | - | 0.94 | 2.18 | 2.09 | 3.04 | - | - | -3.68 | 1.25 | - | 0.1 | 1.11 | 2.75 | -0.32 | 4.2 | - | 0.75 | 1.02 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.13 | -0.11 | - | - | - | - | |
- | - | - | - | - | 2.46 | - | - | - | - | - | - | - | - | - | 4.94 | - | - | -0.78 | - | - | 3.21 | - | - | 2.08 | -1.21 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.39 | - | - | - | - | - | - | - | - | - | - | |
- | - | - | 2.68 | 1.4 | 3.03 | 4.23 | - | - | - | - | - | - | - | - | 3.93 | - | - | 0.05 | - | 1.66 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.84 | - | - | - | - | - | - | - | |
- | - | - | - | - | 4.62 | - | - | - | - | - | 4.97 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | -0.8 | 1.88 | - | -0.04 | -2.57 | 3.21 | - | - | - | - | - | 2.14 | - | - | 3.19 | 1.39 | - | - | - | 0.75 | 0.69 | 0.15 | 1.86 | - | - | - | 0.4 | - | - | -0.14 | - | - | - | - | - | - | - | - | 0.56 | -1.17 | 0.38 | -0.21 | 1.95 | - | - | - | - | 0.89 | 0.71 | - | 1.49 | -0.67 | |
- | - | - | 2.68 | 1.4 | 3.03 | 4.23 | - | - | - | - | - | - | - | - | 3.93 | - | - | 0.05 | - | 1.66 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.84 | - | - | - | - | - | - | - | |
- | - | - | - | - | 4.02 | - | - | - | 2.98 | - | 3.99 | 2.44 | - | 2.02 | - | - | - | 0.19 | - | - | - | - | - | - | -0.18 | - | - | - | - | - | - | - | - | - | - | 2.2 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | 1.0 | 0.33 | 2.49 | 3.04 | 1.97 | - | -2.72 | 2.85 | -0.19 | -0.84 | 2.16 | 2.4 | -0.24 | 2.67 | - | - | 2.62 | - | - | - | - | - | - | -2.03 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -1.09 | -1.18 | -1.13 | - | -1.34 | 0.03 | - | |
- | - | 2.02 | 1.39 | -0.07 | 2.47 | - | - | -1.79 | 3.64 | 0.83 | -0.81 | -0.78 | - | -1.23 | - | - | - | 3.46 | - | - | - | - | - | - | -1.3 | - | - | - | - | -1.17 | -1.02 | -1.02 | - | 0.69 | -1.15 | -0.72 | -0.22 | - | -0.7 | 0.2 | - | - | - | 0.95 | - | - | - | - | 0.39 | -0.91 | -1.02 | -0.15 | 0.72 | 0.63 | -2.57 | |
- | - | - | - | 2.31 | 3.44 | - | - | - | 2.65 | - | 2.79 | 2.27 | - | 0.8 | - | - | - | 2.37 | - | - | - | - | - | - | 0.26 | - | - | - | - | - | - | - | - | - | - | - | 0.7 | - | - | - | - | - | - | - | 0.99 | - | - | - | 1.85 | - | - | 1.04 | 0.87 | 1.15 | -0.42 | |
- | - | -0.17 | -1.89 | - | 2.01 | 3.05 | -2.19 | -2.03 | 3.4 | -0.22 | -1.0 | 0.14 | -1.38 | - | - | - | - | 3.27 | - | - | - | - | -0.3 | - | 0.37 | -1.19 | - | - | 0.24 | -0.59 | -1.65 | -2.22 | -1.12 | -2.09 | 0.4 | -1.91 | -0.58 | -1.1 | -1.5 | -0.12 | -1.9 | -0.04 | -3.22 | -0.07 | 0.69 | -0.53 | -3.79 | -2.46 | -0.07 | -0.05 | - | -0.23 | -2.3 | 0.04 | -0.92 | |
- | - | - | - | - | 4.41 | - | - | - | - | - | 3.8 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.38 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | - | 4.12 | - | - | - | - | - | 3.76 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.02 | - | - | - | - | - | 1.46 | - | - | 2.22 | 2.23 | - | - | - | - | - | - | - | - | - | - | - | - | -1.23 | 1.04 | 2.35 | 0.52 | - | - | 1.54 | - | |
- | - | - | - | - | 3.04 | - | - | - | - | - | 3.01 | - | 2.28 | - | - | - | - | 1.55 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.12 | - | - | - | - | - | - | 1.15 | - | - | - | - | 2.64 | 3.89 | - | |
- | - | - | - | 1.33 | 4.42 | - | - | - | - | - | 2.34 | 3.29 | 3.67 | 1.96 | - | - | - | - | - | - | - | - | - | - | -0.79 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | 2.15 | - | 3.25 | - | - | -1.57 | 0.19 | - | 4.21 | 1.87 | - | 1.48 | - | - | - | 1.11 | - | - | - | - | - | - | -1.36 | - | - | - | - | 0.61 | - | - | - | 1.81 | 1.86 | 1.48 | - | - | - | - | - | - | 0.68 | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | - | 4.61 | - | - | -0.42 | 3.06 | - | 3.26 | - | - | - | - | - | - | 3.7 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | 1.09 | 0.65 | 3.02 | - | - | - | 0.91 | - | - | 2.25 | 2.6 | 1.3 | - | - | 4.77 | 0.77 | - | - | - | - | - | - | -4.01 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
MA_496130g0010 (COX1) | - | - | - | 1.17 | 1.68 | 4.84 | - | - | - | - | - | 3.3 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.12 | - | - | - | 2.94 |
- | -0.69 | - | 2.88 | 3.54 | 3.31 | - | 1.27 | - | - | - | - | - | - | -3.56 | 2.16 | - | 4.16 | - | - | - | - | - | - | - | -1.51 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.28 | - | - | - | - | - | - | - | - | -4.07 | |
- | - | - | 3.37 | 2.94 | 3.56 | - | - | -2.63 | -1.05 | - | 1.74 | - | 3.31 | 0.3 | - | - | 1.37 | -0.92 | - | - | - | - | - | - | -4.13 | - | - | - | - | -0.16 | - | - | - | - | - | - | - | - | - | 2.81 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
MA_709366g0010 (ALDH11A3) | - | - | 0.79 | 2.85 | 2.76 | 1.97 | - | 1.59 | - | 0.49 | - | -0.07 | -0.99 | -1.67 | -0.46 | 3.71 | - | 3.5 | - | - | -0.23 | - | - | - | - | -2.54 | - | 0.66 | - | - | - | - | -1.17 | - | - | - | -1.25 | -0.49 | - | - | - | -1.33 | - | - | - | - | - | - | - | - | -1.15 | - | - | - | - | - |
- | - | - | - | - | 5.01 | - | - | - | - | - | 4.43 | - | - | - | - | - | - | 1.2 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
0.81 | - | - | - | 0.89 | 4.43 | - | - | - | - | - | 4.27 | - | 1.76 | 2.68 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.2 | - | - | - | -0.27 | - | - | - | |
- | - | - | - | 3.56 | 3.28 | - | - | - | - | - | - | 3.63 | 4.29 | - | - | - | - | 1.03 | - | - | - | - | - | - | -0.78 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | -0.58 | 1.63 | 1.43 | 2.21 | 2.97 | - | 0.98 | - | - | - | -1.18 | 1.14 | 0.73 | 0.37 | 4.01 | - | 3.03 | -2.84 | -1.62 | - | 0.19 | - | - | -0.55 | - | 0.61 | -0.5 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.83 | - | - | - | - | - | - | - | - | - | - | - | -2.92 | |
- | - | - | - | - | 4.16 | - | - | - | 0.62 | - | 3.4 | - | - | 4.26 | - | - | - | 0.48 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.43 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | - | 3.48 | - | - | - | -0.32 | - | - | 1.51 | - | - | - | - | 5.27 | 1.4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | - | 4.84 | - | - | - | - | - | 4.77 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
- | - | - | - | - | 4.13 | - | - | - | - | - | - | 3.52 | 3.86 | 3.11 | - | - | - | -0.28 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.63 | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.