Heatmap: Cluster_86 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Ovule
Ovary
Egg cell
Pollen tricellular
Pollen
Sperm
Flower (buds)
Flower
Panicle
Milk grains
Seeds
Seedling
Seedling (12-day-old, DongJin)
Seedling (12-day-old, DongJin, mutant)
Seedling (22-days-old, 22C)
Seedling (22-days-old, 30C)
Meristem
Stems
Callus
Leaf
Leaf (Azucena)
Leaf (Kinandang puti)
Leaf (Pandan wangi)
Leaf (Tadukan)
Leaf (chilling-treatment, 4C, 33h)
Leaf (drought-stress, 1 day)
Leaf (drought-stress, 3 days)
Leaf (drought-stress, 15 min)
Leaf (drought-stress, 45 min)
Leaf (drought-stress, 90 min)
Leaf (drought-stress, 90 min, recovery 15 min)
Leaf (drought-stress, 90 min, recovery 90 min)
Leaf (drought-stress, 90 min, recovery 210 min)
Leaf (heat-stress, 15 min)
Leaf (heat-stress, 150 min)
Leaf (heat-stress, 210 min)
Leaf (heat-stress, 120 min, recovery 15 min)
Leaf (heat-stress, 120 min, recovery 60 min)
Leaf (heat-stress, 120 min, recovery 120 min)
Leaf (dry season, irrigated field)
Leaf (dry season, rainfed field)
Leaf (wet season, irrigated field)
Leaf (wet season, rainfed field)
Root
Root (heading stage)
Root (tillering stage)
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
LOC_Os01g05520.1 (LOC_Os01g05520)
-2.54 - -0.85 - 2.1 5.4 - 0.89 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-3.59 2.91 1.16 - -2.11 4.94 -3.11 -2.69 -3.28 -3.93 1.4 0.93 - -2.85 - - -0.62 -1.62 - -4.37 -4.91 - -5.0 -4.7 - - - - - - - -2.39 - - - - - - - - -3.1 - - 0.69 - - - - -
LOC_Os01g07680.1 (LOC_Os01g07680)
-7.36 -1.53 - 0.96 -0.48 5.43 0.58 0.13 - -5.41 -6.29 -5.16 - - - - -5.35 - - - - - - - - - - - - - - - - - - - - - - - -7.15 - -5.33 - - - -3.01 - -
LOC_Os01g18830.1 (LOC_Os01g18830)
-0.91 0.62 0.75 -0.64 -1.27 5.19 -2.66 -4.03 -0.09 -2.69 -1.15 - -0.35 -2.02 - - 0.72 -1.84 - -1.04 -2.97 - - -6.04 -1.53 -3.03 - - -1.52 -2.83 - -4.73 - - - -2.8 - -3.04 - -4.38 -3.06 -3.63 -3.3 -1.79 -2.22 -2.0 - - -
LOC_Os01g68400.1 (LOC_Os01g68400)
-1.12 -0.37 -2.41 -5.07 - 5.53 -3.28 -1.77 -3.06 -3.83 -2.68 - - -3.87 - - -1.1 -4.24 - -8.86 - - -6.62 -6.09 - - - - - - - - - - - - - - - -6.62 - - - -6.15 - -3.08 - - -
LOC_Os02g25980.1 (LOC_Os02g25980)
- 4.28 - - - 4.88 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os03g01460.1 (LOC_Os03g01460)
-0.2 1.41 0.09 -1.86 - 4.05 -0.33 0.52 -2.48 1.35 0.72 - -0.18 -0.16 - - 0.37 -0.89 1.03 -3.77 - - -4.36 - - - - - -1.88 - - - - - - - - - - -3.84 - - -4.4 0.44 -2.44 -2.55 3.29 1.65 -2.22
LOC_Os03g11860.1 (LOC_Os03g11860)
-2.85 0.56 -1.82 -5.05 -1.79 5.47 -4.8 -3.3 -1.83 -2.36 -3.79 - -1.55 -0.72 - - -1.3 -4.0 - -5.06 -7.73 - - -5.74 -3.2 - - - - - - -3.98 - - - - - - - -6.81 - - - -3.96 -3.98 - - - -
LOC_Os03g12330.1 (LOC_Os03g12330)
2.33 1.09 - 0.41 - 5.15 - - - - -0.01 - - 1.42 - - -1.03 - - -0.83 - - -2.03 - - - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os03g14190.1 (LOC_Os03g14190)
0.11 -0.2 -0.19 -2.67 -1.14 4.9 -2.63 -5.25 -2.09 -2.59 -1.3 - - -4.42 - - -5.85 -7.74 - -10.03 - -6.52 -4.62 - - - - - - - - -4.95 - - - - -2.92 - - - - - - - -3.47 -3.68 3.6 1.13 -
LOC_Os03g17359.1 (LOC_Os03g17359)
-0.01 1.94 -0.56 -2.0 -0.9 5.19 -1.05 -2.04 -2.63 -2.7 -0.69 - -0.31 -0.2 - - -1.23 -0.02 - -3.59 -4.64 -4.51 - - - - - - - - -1.1 - - - - - - - - - -2.68 -1.13 -2.54 -5.12 - - - - -
LOC_Os03g25190.1 (LOC_Os03g25190)
-0.83 2.43 0.63 2.19 0.47 4.71 1.36 1.08 -1.07 -0.03 -0.31 - - - - - - -4.0 - - - - - - - -0.06 - - - -0.53 - -1.69 - - - - - - - - - - - -4.69 -1.4 - - - -
LOC_Os03g42450.1 (LOC_Os03g42450)
-0.77 -0.63 -2.85 -1.66 -2.03 4.64 -0.83 -0.77 0.56 1.29 1.44 0.28 -0.85 -2.22 - - -1.72 -2.84 - -4.94 - - -6.03 - 2.93 -2.5 - - - -1.97 - - - - - - - - - - - - - -2.45 -1.42 -2.05 0.69 0.24 -2.02
LOC_Os03g49132.1 (LOC_Os03g49132)
1.79 2.46 -0.95 -0.64 -1.4 4.38 -0.96 -1.73 -0.58 -2.2 -1.04 -2.9 - - - - -0.83 -3.53 1.52 -2.46 -3.82 - - -3.6 0.96 - - - - -1.34 - -2.24 - - -1.0 - -1.41 - - - - -2.18 -3.16 -0.82 -0.11 -1.96 1.63 0.76 0.28
LOC_Os03g49890.1 (LOC_Os03g49890)
-2.67 0.65 - 1.58 1.55 5.33 -2.58 - - - -1.64 - - - - - -0.73 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os04g10180.1 (LOC_Os04g10180)
1.18 -0.41 - - -2.67 4.68 - - 1.67 - -5.41 - - - - 1.28 - -0.52 2.98 0.05 - - - - -0.17 1.22 0.16 - - - - - - - - - - - - - - - - -5.13 -0.97 -3.18 - - -
LOC_Os04g13010.1 (LOC_Os04g13010)
-3.11 1.09 -2.4 - -1.37 5.49 - - -1.25 - - -3.14 - - - - - - - - - - - - -0.5 - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os04g33790.1 (LOC_Os04g33790)
-4.27 1.13 -5.25 -0.56 -1.09 5.42 -3.38 -3.76 -2.72 - -6.4 0.48 - - - - -4.32 -5.4 - -2.86 - - - -7.11 - -3.36 -3.34 -1.99 - - - - - - - - -3.31 - - - -6.05 - - -5.49 -2.14 -3.94 - - -
LOC_Os04g36000.1 (LOC_Os04g36000)
-0.98 1.01 2.3 -1.03 -1.32 5.25 -0.96 -0.26 - - -3.27 -4.12 - -3.56 - - - -4.58 - -9.49 - - - - - -0.64 - - - - - -2.14 - - - - - - - - - - -5.19 - - - - - -
LOC_Os04g37440.1 (LOC_Os04g37440)
-0.15 2.34 -2.46 0.83 -0.86 4.91 -3.94 -1.26 - - -0.97 - - 0.91 - - -1.83 -3.39 2.13 -7.66 - - - - - - - - - - - - - - - - - - - - - - - -3.63 - - -0.83 1.16 -
2.29 2.87 0.05 -1.98 0.45 3.87 -1.71 -1.16 -0.23 -1.43 -0.21 -1.17 -2.65 -3.4 -0.42 - 0.46 -0.88 1.27 0.33 -3.83 -3.15 -3.46 -3.0 -1.39 -0.03 -1.73 -1.35 -2.0 -2.34 -2.85 -2.4 -2.53 - - -2.6 - - - -3.1 -2.21 -2.17 -2.22 -0.14 0.44 -2.45 -0.06 0.77 -2.97
LOC_Os04g53260.1 (LOC_Os04g53260)
-1.31 1.62 -0.47 - - 4.94 - - - - -3.09 - - - - - - - - -3.49 - - - - 1.78 - - - - - - - - - - - - - - - - - - 0.71 -0.76 2.94 - -1.14 -
LOC_Os05g14700.1 (LOC_Os05g14700)
-2.69 0.78 - - - 5.51 -3.38 - -1.02 - -4.32 - - - - - -1.23 -2.14 - -4.37 - -3.98 - - - - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os05g38760.1 (LOC_Os05g38760)
-3.51 -1.62 -5.84 - -3.01 5.53 -2.68 - - - -5.18 - -2.76 - - - -2.19 -3.27 - - - - - - - - - - - - - - - - - - - - - - - - - -7.24 - -2.52 - -1.52 -0.08
LOC_Os06g06480.1 (LOC_Os06g06480)
0.12 -0.24 -0.81 - -5.66 5.07 -2.93 -3.31 -0.14 -1.55 -1.07 -4.81 -1.3 -0.7 -2.36 -1.54 -0.33 -0.84 1.62 -3.13 -7.31 -8.18 -6.6 -9.75 -3.75 -5.82 -4.65 - - -5.56 - -8.05 - -5.61 - - - - -4.72 -8.65 -5.45 -5.46 -4.9 -2.0 -1.22 0.74 -2.14 -1.0 0.53
LOC_Os06g21090.1 (LOC_Os06g21090)
-1.41 4.05 - - - 4.72 - - 1.3 - -4.13 - - -0.5 - - -0.53 -1.09 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.26 - - - -
-5.28 1.48 - - -0.12 5.3 - - - -4.88 -0.53 -1.93 - - - - -1.69 -5.91 - - -5.47 - - - - - - - - - - -3.33 - - - - - - - - - - - -1.24 0.73 1.17 - - -
LOC_Os06g23470.1 (LOC_Os06g23470)
- 1.23 - - - 5.22 - - 0.84 - -3.96 - - 1.77 - - -1.97 - - 1.91 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os06g48920.1 (LOC_Os06g48920)
1.54 1.9 1.52 -4.16 -2.04 4.55 1.21 0.44 1.36 - -0.05 -1.74 -2.32 -0.8 - - 1.82 -2.1 - -2.63 -4.65 -6.48 -5.94 -4.23 - - - - - - -2.68 -1.0 - - - - -2.29 - - -6.2 -3.81 -3.49 -2.91 -3.65 -2.83 -0.66 - -2.04 0.29
LOC_Os08g02570.1 (LOC_Os08g02570)
-3.64 1.67 - -1.8 -3.62 5.46 -2.57 - -2.1 - -7.38 - - - - - -4.74 -5.32 - - -3.81 - - -4.57 - - - - - - - -2.26 - - - - - - - - - - - -5.26 - - - -0.74 -
LOC_Os08g06740.1 (LOC_Os08g06740)
0.43 2.92 -2.86 -3.21 - 4.25 -0.67 -2.82 0.65 - -3.18 - -2.19 -0.98 -0.07 -0.01 -2.99 -1.14 - 1.56 -1.61 -2.3 -1.49 -3.3 0.0 1.15 0.23 - -0.61 - - -1.52 -1.14 - - -0.19 - 0.01 0.72 -3.79 -2.45 -2.38 -2.48 -1.26 -0.44 - - - -
LOC_Os08g16460.1 (LOC_Os08g16460)
-3.75 1.94 -2.31 -1.29 -0.98 5.24 -2.12 -4.12 0.67 -2.15 -2.43 -0.84 -1.14 -1.56 - - -4.71 -1.42 - -3.99 -4.04 -3.25 -2.26 -1.98 - - - - - - - -0.65 - - - - - - - - -3.38 -2.47 -2.86 -3.84 - - - -2.39 -
LOC_Os08g38360.1 (LOC_Os08g38360)
-1.25 2.62 - - -1.81 5.32 -1.18 - -1.5 - 0.4 - - - - - - - - - - -9.05 -9.05 -8.58 - - - - - - - - - - - - - - - - -3.22 - - - - - - - -
LOC_Os09g02080.1 (LOC_Os09g02080)
-1.38 2.42 -3.84 -4.56 -2.33 3.99 -5.02 -2.34 -3.56 - -3.76 -2.25 - 3.3 - - -4.16 -1.96 1.05 -2.58 -0.83 -5.58 -0.19 -3.24 - -2.21 -1.96 0.42 -0.03 0.86 - -0.13 - - -0.14 -1.83 -1.89 0.09 -0.4 -1.54 -0.67 -0.2 0.96 - - - - - -
LOC_Os09g12990.1 (LOC_Os09g12990)
-0.17 1.06 0.99 1.03 2.71 4.66 0.18 0.18 -4.06 -3.26 -2.01 - -1.47 0.43 - - 0.52 -1.09 - -0.6 -5.98 - -5.31 - -0.34 -0.36 -1.08 - - - - -3.44 - - - - - - - - -6.44 - - -1.09 -2.78 - -2.82 -2.09 -
LOC_Os09g21500.1 (LOC_Os09g21500)
-6.29 -0.72 2.55 2.98 -1.15 4.85 1.3 1.46 - - -5.05 - - - - - - - - -3.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os09g29680.1 (LOC_Os09g29680)
0.37 0.97 -4.12 - 2.83 4.37 -3.08 -2.44 -1.58 -1.12 -0.94 -0.52 -1.2 -1.05 -2.35 - -3.68 -0.22 - -3.78 -1.39 -1.5 -1.56 -0.26 - - -1.03 0.94 - 1.6 0.21 0.06 - -0.46 -0.54 -0.89 0.05 -2.28 - -4.61 -1.38 -3.8 -2.41 - - - - - -
LOC_Os09g31019.1 (LOC_Os09g31019)
-1.79 -2.44 -3.3 0.85 -1.39 5.0 0.65 0.9 -1.08 -9.29 -1.82 2.43 -4.92 -3.14 - - -8.33 -4.61 1.23 -7.84 -8.54 -7.53 -7.71 -6.07 - - -5.91 - - - - - - - - - - - - -4.98 -9.46 -6.05 -7.45 -6.49 -1.08 -2.31 0.23 -3.03 -5.82
LOC_Os09g32590.1 (LOC_Os09g32590)
-4.97 -0.48 - -2.52 -0.2 5.52 -4.78 - -1.01 -3.28 -4.08 - - - - - - - - - - - - - -0.86 - - - - - - - - - - - - - - - - - - - - - - -3.63 -
LOC_Os09g34080.1 (LOC_Os09g34080)
-0.7 1.79 - - -0.73 5.1 0.36 0.81 -2.62 -3.27 -3.71 - -0.82 -1.18 - - -1.45 -1.02 - - -1.22 - -2.37 - 0.47 - - - - -0.83 - -2.73 - - -0.48 - -0.9 - -0.29 - - - -3.51 - - - - - -
LOC_Os10g28830.1 (LOC_Os10g28830)
-0.69 0.63 0.6 2.23 1.04 4.93 -0.81 1.01 -0.63 - -6.54 - -1.81 -0.76 -1.23 -1.17 - -2.29 - - -2.62 -3.24 -4.59 -4.1 - - - -2.34 - - - -4.26 - - - - -0.85 -0.82 -1.52 -3.17 -3.4 -2.45 -3.3 - -2.77 -2.98 - - -
-2.03 1.95 -2.98 0.43 - 5.35 - -3.83 -0.41 - -4.44 - - - - - 0.49 -3.1 - - -4.58 -4.41 - - - - - - - - - -2.53 - - - - - - - - - - - - - - - - -
LOC_Os11g16720.1 (LOC_Os11g16720)
-1.36 2.47 - -0.69 -2.02 4.93 -0.3 -1.03 - -2.86 -1.62 - -0.74 - - - - -0.92 - -1.39 -3.09 - -3.6 - - - - 0.59 - 0.84 0.67 - - - - - - 1.11 - - - - - -2.11 - -0.04 - - -
LOC_Os11g38180.1 (LOC_Os11g38180)
-0.32 2.95 - 0.44 -0.07 4.72 0.24 -0.76 0.92 -2.43 -0.69 - - - - - 1.68 -3.29 1.56 - - - -5.04 - - - -1.52 - - - - -2.21 - - - - - - - - - - - -5.2 -1.6 -2.36 - - -
LOC_Os11g39690.1 (LOC_Os11g39690)
-3.27 2.49 -1.57 - - 5.36 -1.53 - -0.07 - - - - - - - - -1.97 - -5.31 - - - - - - - - - - - - - - - - - - - - - - - -2.22 - - - - -
LOC_Os11g46030.1 (LOC_Os11g46030)
-2.56 1.94 - - - 5.04 - -1.11 0.77 - -2.11 - 0.62 1.18 - - -0.34 -3.06 - -2.42 - -4.19 -1.77 -1.45 - - - - - - - 0.67 - - - -0.21 - - - -3.94 -2.03 - -2.64 - - -0.86 -0.51 - -
LOC_Os12g21770.1 (LOC_Os12g21770)
-3.85 3.48 -2.97 -3.36 - 4.09 - - - - -4.15 -1.14 - 3.7 1.56 - - -4.23 - -4.43 -3.41 -4.02 -2.28 -2.83 - - - - - -0.62 - -0.16 - - - - - -0.09 - - -3.28 -3.23 - -2.28 - - -0.9 - -
LOC_Os12g23820.1 (LOC_Os12g23820)
- 1.42 - - 0.64 5.47 - -3.38 - - - -1.79 - - - - - - - -7.16 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
LOC_Os12g33030.1 (LOC_Os12g33030)
-7.37 -1.9 - -4.85 -3.12 5.59 - - - - -5.03 - - - - - - - - - -6.11 - - - - - - - - - - - - - - - - - - -3.38 -5.15 -5.1 -3.03 -6.77 - - - - -
LOC_Os12g38830.1 (LOC_Os12g38830)
-1.92 3.65 - -1.84 0.5 4.69 - - - - -4.51 - - 0.54 - - - -2.75 - -0.47 - - - - 2.11 0.78 - - - - - - - - - - - - - - - -1.7 - - - - - - -
LOC_Os12g43710.1 (LOC_Os12g43710)
-5.59 0.4 - 1.67 -1.48 5.11 -1.12 -0.02 - -2.84 -4.05 -3.16 -1.12 -1.07 - - -5.13 -3.6 - -2.8 -4.4 -5.78 -4.81 - - - - - -0.76 -1.46 - -2.04 - - - -1.73 - - - - - -4.07 - -2.56 - - 1.94 0.07 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.