Heatmap: Cluster_87 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots
Roots (Meristematic zone)
Roots (Differentiation zone)
Roots (Elongation zone)
Hypocotyl
Leaves
Meristem (Vegetative)
Apical Meristem
Floral Buds
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Style (1d before flowering)
Style (1d after flowering)
Style+pollen (1d after flowering)
Pollen (Germinated)
Pollen (Mature/Ungerminated)
Fruits (Breaker stage)
Fruits (Mature green)
Pericarp/Exocarp (4d Post Anthesis)
Pericarp (5d Post Anthesis)
Pericarp (7d Post Anthesis)
Pericarp (10d Post Anthesis)
Pericarp
Seeds (5d Post Anthesis)
Seeds (7d Post Anthesis)
Seeds (10d Post Anthesis)
Septum/Seed (4d Post Anthesis)
Septum (7d Post Anthesis)
Septum (10d Post Anthesis)
Seedling (Leaves)
Seedling (Roots)
Solyc01g010500.2.1 (Solyc01g010500.2)
- - - - -1.22 -2.85 -4.37 -5.14 3.27 3.18 -6.28 - - - -0.62 -0.4 -0.45 2.93 2.28 - - - - - - - - - - - - - -6.52 -
Solyc01g056430.1.1 (Solyc01g056430.1)
- - - - - - - - 1.19 4.39 - - - - -0.76 - -0.54 2.09 2.11 - - - - - - - - -3.16 -2.04 - - -0.76 - -
Solyc01g066710.3.1 (Solyc01g066710.3)
-1.28 2.75 -5.29 -3.92 -4.9 -1.85 -5.64 -4.06 2.37 3.23 -3.89 -3.67 0.08 0.29 -0.19 0.33 0.12 1.04 0.72 -2.0 -1.16 -3.65 -4.33 -4.06 -4.02 -0.84 -2.94 -3.13 -2.62 -4.09 -4.23 -3.26 -5.46 -1.6
Solyc01g105730.1.1 (Solyc01g105730.1)
- - - - - - - - 4.9 1.33 - - - - -0.79 - - -1.2 -0.71 - - - - - - - - - - - - - - -
Solyc01g105740.1.1 (Solyc01g105740.1)
- - - - - -3.21 - - 4.7 0.75 - - -0.99 - 0.22 - -2.35 1.63 0.28 - - - - - - - - - - - - - - -
Solyc02g062870.3.1 (Solyc02g062870.3)
- - - - - -3.07 - - -2.35 4.44 - - - - -0.11 - -1.52 2.64 2.14 - - - - - - - - - - - - - - -
Solyc02g067880.2.1 (Solyc02g067880.2)
-3.69 - - - -2.86 -1.64 - - 2.35 3.4 - -4.68 -4.81 -3.57 -0.34 -1.03 -0.21 2.9 1.97 - -2.67 -4.63 -4.42 -3.86 -3.07 - 0.69 -0.31 -0.48 -2.04 -3.03 -3.17 -3.93 -5.2
Solyc02g092850.1.1 (Solyc02g092850.1)
-0.11 - 0.51 -0.51 -4.03 -1.23 -4.9 - 2.03 2.96 -2.69 -4.17 -2.52 -2.51 -2.01 - - 1.85 3.05 -3.99 - -2.6 - -4.03 -1.99 - -1.67 -1.52 -1.36 -0.52 -0.34 0.45 -2.58 0.31
Solyc03g005150.3.1 (Solyc03g005150.3)
-1.01 -4.32 -2.16 -5.51 -0.57 -2.83 -1.23 -5.5 3.61 -0.59 -1.88 -1.67 -1.08 -1.58 -3.11 -4.72 -3.3 -0.85 -2.06 -6.8 - -2.17 -1.15 -2.38 -2.34 -2.22 2.91 1.73 0.75 0.15 -0.23 -3.18 -5.1 -0.4
Solyc03g031520.3.1 (Solyc03g031520.3)
-11.16 -9.32 -7.87 -5.8 -8.43 -9.76 -11.44 -11.04 3.76 4.33 -9.62 -12.16 - - -2.14 -8.58 -4.89 - - -7.38 -6.55 -11.61 - - -12.38 - - - - -11.27 -11.88 - -11.46 -
Solyc03g031710.2.1 (Solyc03g031710.2)
- - - 0.42 - -4.77 - - 3.85 3.61 - - - - -2.02 -3.04 -2.42 1.81 0.8 - - - - - - - - - - - - - - -2.7
Solyc03g044210.3.1 (Solyc03g044210.3)
-2.41 - -7.63 - -1.99 -4.11 -8.14 - 3.85 3.93 -6.64 -4.99 -8.82 -6.78 -1.84 -4.15 -2.71 0.75 0.34 -2.35 -5.39 -7.39 - -9.29 -9.44 - - -10.1 -8.2 -7.97 -7.02 -5.84 -6.11 -4.13
Solyc03g080000.1.1 (Solyc03g080000.1)
-1.23 3.58 -1.8 -0.28 -5.23 -4.59 - - 1.66 3.44 -5.11 -4.33 -5.6 -3.61 -3.76 - -1.81 0.74 1.32 -6.58 -4.52 - - - - - -6.03 -6.5 -4.46 - - -5.28 - 0.67
Solyc03g082810.1.1 (Solyc03g082810.1)
- -0.54 - - - -0.93 1.38 - 4.42 -0.51 - - - - - - - 1.64 0.57 - -1.97 -2.55 -2.64 -4.54 - - -0.93 -1.9 -1.09 - -1.2 - 0.18 -
Solyc03g113360.3.1 (Solyc03g113360.3)
- - - - -6.54 -5.47 -6.77 - 2.55 3.78 -6.42 -6.96 -5.93 - -4.81 -4.65 -2.06 2.94 2.65 - -5.83 - - - - - - -6.28 -7.71 - - -6.3 - -
Solyc03g114200.3.1 (Solyc03g114200.3)
-0.49 -1.05 -2.67 0.91 -1.22 -1.21 -3.34 -1.68 4.36 0.73 -1.88 -1.87 -5.93 -0.53 -0.65 -1.0 -0.75 0.38 0.22 -4.45 -1.36 -5.42 -2.95 -3.78 -3.06 -0.89 -4.64 -4.61 -5.65 -5.08 -5.69 -4.07 -3.36 -1.82
Solyc04g011590.3.1 (Solyc04g011590.3)
- - - - -3.59 -4.21 - - 4.74 1.83 -4.71 -5.72 -5.45 - -0.24 - 0.55 -0.87 -0.5 - - - - - - - - - - - - - - -
Solyc04g011763.1.1 (Solyc04g011763.1)
- - - - 2.02 -0.82 - - - 3.54 - - - - - - - 2.69 3.42 - - - - - - - - -0.8 - - - - - -
Solyc04g049440.2.1 (Solyc04g049440.2)
- - - - - - - - 2.52 4.75 - - - - - - - 0.12 -1.46 - - - - - - - - - - - - - - -
Solyc05g005333.1.1 (Solyc05g005333.1)
- - - - - - - - 1.24 3.18 - - - - -2.62 - -1.32 4.28 1.37 - - - - - - - - - - - - - - -
Solyc05g006343.1.1 (Solyc05g006343.1)
-1.31 - - - -3.35 0.61 - -0.39 3.97 3.0 - - - - - -2.4 -1.67 0.82 1.9 -3.62 -2.99 -3.4 -2.73 -1.54 -2.41 - -2.68 -3.76 -3.38 -2.23 - - - -
Solyc05g008680.1.1 (Solyc05g008680.1)
- - - - - - - - 3.66 1.52 -5.16 - - -5.37 - - -1.68 3.25 3.04 - -4.22 - - - - - - - - - - - - -1.76
Solyc05g008700.2.1 (Solyc05g008700.2)
- - - - - - - - 3.94 3.61 - - 1.02 -0.5 - - - 0.8 - - - - - -2.97 - - -1.29 -2.38 -2.38 - - - - 0.05
Solyc05g008720.1.1 (Solyc05g008720.1)
- - - - - - - - 3.49 3.9 - - - - -0.35 - -1.61 2.23 0.99 - - - - - - - - - - - - - - -
Solyc05g008730.1.1 (Solyc05g008730.1)
- - - - - -4.37 -2.95 - 2.74 4.17 - - - - - - -1.34 2.24 1.48 0.09 - - - -3.04 - - - -3.43 - - - - - -
Solyc05g046040.2.1 (Solyc05g046040.2)
- - - -2.52 - - - - 3.3 4.02 -3.44 - - - -1.42 - -1.61 0.8 2.39 - - - - - - - - - - - - - - -
Solyc05g050690.2.1 (Solyc05g050690.2)
- - - - 0.03 -2.72 -2.72 -1.77 3.77 2.0 - - -2.86 - -2.35 -0.67 - 3.18 2.08 - - - - -4.36 -2.32 - - - -2.48 - - - - -
Solyc05g052290.2.1 (Solyc05g052290.2)
- - 1.93 0.54 -1.35 -0.07 - -0.72 2.67 3.2 - - -3.76 - - - -5.29 2.33 2.15 - - -5.16 - -6.49 -5.63 - -3.04 -2.06 -1.59 -2.2 - - - -0.44
Solyc05g055750.3.1 (Solyc05g055750.3)
-8.12 - -3.35 -7.54 -4.08 -0.1 - -2.01 2.94 3.6 - - - - -3.0 -6.94 -1.7 2.15 2.98 - - - - - -9.26 - - - - - - - -3.02 -7.61
Solyc06g008530.2.1 (Solyc06g008530.2)
-1.84 1.06 -2.17 0.15 -0.28 -0.75 0.89 -0.23 1.66 2.81 0.24 -0.07 0.75 0.43 -1.33 -2.93 -2.06 -0.47 -0.74 -2.21 -0.41 -0.48 -0.45 -0.61 -1.09 -0.97 -0.27 -0.42 -0.77 -0.7 -0.14 -0.66 -7.66 -1.52
Solyc06g059790.3.1 (Solyc06g059790.3)
- - - - - - - - 3.89 4.22 - - -10.16 -9.4 -3.55 -9.44 -6.66 - -12.96 -11.05 -8.06 -6.71 -9.54 -7.88 -6.82 - -5.19 -3.77 -2.51 -5.06 -6.18 -6.78 - -
Solyc06g063390.3.1 (Solyc06g063390.3)
0.08 -0.26 - -2.37 -2.24 -0.84 - - -0.29 1.84 -1.07 -1.88 -1.29 -0.4 -1.48 - - 0.54 -1.06 -3.3 - -0.3 -3.03 -0.4 -0.47 - 0.83 1.97 2.94 0.86 0.71 -0.78 0.19 0.55
Solyc06g064700.1.1 (Solyc06g064700.1)
- - - - - - - - 4.94 - - - - - - - - 1.52 -0.96 - - - - - - - - - - - - - - -
Solyc06g064730.1.1 (Solyc06g064730.1)
- - - - - - - - 4.67 0.41 - - - - 1.88 - - 1.68 -1.56 - - - - - - - - - - - - - - -
Solyc06g075260.3.1 (Solyc06g075260.3)
-5.26 -0.15 -3.77 -2.22 -2.33 -3.32 -2.46 -1.94 4.0 3.74 -6.97 -8.98 -7.71 - -2.14 -5.26 -2.11 -0.12 -0.66 -8.48 -6.85 -4.37 -6.34 -6.15 -7.22 - -6.21 -6.37 -6.49 -3.65 -4.36 -7.29 -8.32 -1.54
Solyc06g075320.3.1 (Solyc06g075320.3)
-2.15 -3.03 -3.53 -4.03 -4.45 -3.47 -4.24 -6.53 3.85 3.73 -2.32 -2.5 -3.73 -4.19 -1.39 -3.49 -1.55 0.88 0.22 -2.7 -2.13 -4.68 -4.36 -4.59 -4.53 -6.45 -4.23 -3.64 -3.88 -4.47 -4.88 -4.55 -5.98 -1.34
Solyc06g075710.1.1 (Solyc06g075710.1)
- - - - - - - - 2.93 3.92 - - -2.82 - -1.28 - -1.32 2.66 1.81 - - - - - -2.76 - - - -1.8 - - - - -
Solyc07g021003.1.1 (Solyc07g021003.1)
- - - - - -5.76 - - 1.97 4.46 -0.8 - - - - -1.1 - 1.67 1.96 - - - - - - - - - - - - - - -
Solyc07g021007.1.1 (Solyc07g021007.1)
- - - - - - - - 2.3 4.28 - - - - - - - 2.22 2.34 - - - - - - - - - - - - - - -
Solyc07g047920.2.1 (Solyc07g047920.2)
- 0.02 - - - -3.42 - - 3.09 4.04 - - - - - - - 1.29 2.4 - - - - - - - - -1.91 - - - - - -
Solyc07g052620.1.1 (Solyc07g052620.1)
-2.16 -5.5 -5.4 -6.82 -3.24 -3.96 -5.17 -5.65 3.56 3.44 -3.93 -3.07 -4.18 -4.19 1.75 1.38 1.02 - - -5.53 -6.44 -2.84 -6.31 -5.44 -4.49 - -5.56 -4.52 -3.59 -3.22 -3.95 -1.53 -6.26 0.71
Solyc07g052630.2.1 (Solyc07g052630.2)
- - - - - -4.89 - - 3.3 2.73 - - - - - - -1.24 3.28 1.81 - - -3.15 - -3.17 -2.84 - 0.19 -0.42 0.41 - -2.55 -3.68 - -
Solyc08g075110.2.1 (Solyc08g075110.2)
- - - - - 0.67 - 2.93 4.02 - - - - - - - - - 1.88 - - - - - - - 1.78 0.51 - - - - - -
Solyc09g007820.2.1 (Solyc09g007820.2)
-3.89 -3.45 -3.96 - -4.26 -6.38 -3.51 - 3.39 3.75 - - - -5.36 -3.71 -3.19 -3.28 0.48 -0.29 -4.93 -3.3 -1.15 -5.18 -2.61 -2.71 - -0.37 0.63 -0.14 0.81 0.01 -2.74 - -3.58
Solyc09g008415.1.1 (Solyc09g008415.1)
- - - - - - - - 4.43 1.54 - -3.85 2.66 0.56 -1.39 - -3.32 -1.77 - - -2.71 - - - - - -3.37 -1.86 -4.87 - - - - -1.28
Solyc09g010730.1.1 (Solyc09g010730.1)
-1.44 -1.6 2.44 0.19 -3.47 0.03 - -2.59 3.74 2.36 -3.1 - - - -0.96 -2.76 -2.62 0.69 0.62 - - -1.81 -3.08 -3.83 -4.2 - -3.45 -3.08 -3.41 -1.25 -4.27 -0.01 - -0.86
Solyc09g064560.1.1 (Solyc09g064560.1)
- - - - - -6.09 - - 4.74 -1.79 - - - -2.66 -1.91 - -1.48 2.12 0.01 - - - - - - - -2.76 - -4.37 - - - - -0.66
Solyc09g064570.1.1 (Solyc09g064570.1)
- - - - - -4.19 - - 4.69 - - - - - -0.03 - -0.92 2.06 -1.65 -0.63 -0.8 - - - - - -0.65 -1.78 - - - - - -
Solyc10g005940.1.1 (Solyc10g005940.1)
-2.75 - - - -3.33 -1.96 - - 4.72 1.85 - - -1.21 - 0.32 -1.44 -0.15 - - - - - - -4.3 -3.25 - - -5.16 -3.39 - - -3.34 - -2.18
Solyc10g017715.1.1 (Solyc10g017715.1)
- - - - - - - - 5.01 - - - - - 0.79 - - - - - - - - - - - - - - - - - - -
Solyc10g019140.2.1 (Solyc10g019140.2)
- - - - - - - - 1.18 4.68 - - 1.08 -0.16 - - - 0.78 0.18 - - - - - - -1.83 - - - - - - - -
Solyc10g019260.2.1 (Solyc10g019260.2)
-1.04 -2.13 - -1.21 -3.76 -4.11 - -2.13 2.89 3.39 1.03 -2.06 - - -2.35 0.6 -0.17 1.65 1.96 - - - -3.49 -5.68 -4.93 - - - -4.58 - - - - 1.31
Solyc10g037940.2.1 (Solyc10g037940.2)
-1.61 -4.24 -1.97 -0.73 -0.94 -3.43 -2.93 - 3.04 3.13 -3.52 - -5.29 - 0.11 1.05 -0.21 2.43 2.34 -3.25 - - - -4.92 -3.92 - - -5.52 -4.88 -4.41 - -3.63 - -3.77
Solyc10g062085.1.1 (Solyc10g062085.1)
-4.62 - - - - -5.8 - - 3.53 4.3 - - - - - -4.89 -3.46 0.54 0.02 - - - - - - - - - - - - - - -2.91
Solyc10g062090.1.1 (Solyc10g062090.1)
- - - - - - - - 3.7 4.21 - - - - - - - 0.67 -0.71 - -2.51 - - - - - - - -4.33 - - -3.72 - -
Solyc10g062100.1.1 (Solyc10g062100.1)
- - - - - - - - 3.44 4.36 - - - - - - - 0.43 0.29 - - - - - - - - -3.86 - - - - - -
Solyc10g076640.1.1 (Solyc10g076640.1)
- - - - - -1.76 - - 4.45 0.19 - - - - -0.51 - 0.1 2.66 1.3 - - - - - - - - - - - - - -3.79 -
Solyc10g083540.2.1 (Solyc10g083540.2)
-0.01 - 0.05 - -1.77 0.42 -2.72 0.65 3.49 -0.08 - - -1.09 -1.7 -3.19 - -1.82 2.34 2.95 -5.02 - -3.71 -4.0 -5.21 -4.62 - 0.17 -2.89 -4.77 - - - - -0.14
Solyc10g085650.2.1 (Solyc10g085650.2)
- - -4.39 - -2.32 -1.76 - -2.39 4.28 0.79 -5.73 -5.77 -2.97 -4.5 -0.41 -4.89 -1.94 2.48 2.0 -4.66 - -5.56 - - -4.2 -4.11 -4.35 -2.41 -1.07 -2.1 - -3.0 - -6.14
Solyc11g010290.2.1 (Solyc11g010290.2)
0.23 -3.7 - -1.64 2.56 0.57 -3.75 0.6 3.32 1.35 -3.43 -3.59 -5.53 -3.29 -1.26 -1.42 -0.45 0.91 0.38 -8.32 -4.67 -0.89 -2.61 -2.4 -3.55 - -0.9 -1.1 -2.62 -0.15 -0.58 -0.89 -0.22 -0.37
Solyc11g042850.2.1 (Solyc11g042850.2)
- -7.43 - -3.66 - -8.04 -4.24 - 4.18 2.79 -6.72 -6.62 0.21 1.35 -0.95 -1.33 -0.46 0.99 0.1 -7.06 -4.29 -6.0 -6.38 -6.4 -7.64 - -3.47 -3.7 -4.05 -5.6 -5.15 -6.75 - -5.26
Solyc11g050710.2.1 (Solyc11g050710.2)
- - - - - -4.0 - - 2.84 4.52 - - -3.12 -2.84 - - -2.52 0.99 0.49 - - - - - - - - - - - - - - -
Solyc12g088010.2.1 (Solyc12g088010.2)
-1.77 -1.44 -2.65 -1.11 -1.53 -2.93 1.48 -2.99 1.39 3.62 -1.28 -2.42 0.29 -1.1 -0.6 -1.2 -1.33 -0.42 -0.42 -3.73 -2.22 -0.15 -0.43 -0.45 -1.16 -3.0 0.51 0.15 -0.29 -0.06 0.16 -1.09 - -6.28
Solyc12g088160.2.1 (Solyc12g088160.2)
-4.31 - - - -2.08 -3.96 -0.47 - 4.39 0.66 - - -4.41 - -1.86 - -0.77 -0.52 -0.99 1.29 0.68 -1.49 - -2.72 -1.99 - -3.97 -2.4 -1.74 -1.01 -1.3 -0.78 -5.22 0.52

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.