Heatmap: Cluster_177 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots
Roots (Meristematic zone)
Roots (Differentiation zone)
Roots (Elongation zone)
Hypocotyl
Leaves
Meristem (Vegetative)
Apical Meristem
Floral Buds
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Style (1d before flowering)
Style (1d after flowering)
Style+pollen (1d after flowering)
Pollen (Germinated)
Pollen (Mature/Ungerminated)
Fruits (Breaker stage)
Fruits (Mature green)
Pericarp/Exocarp (4d Post Anthesis)
Pericarp (5d Post Anthesis)
Pericarp (7d Post Anthesis)
Pericarp (10d Post Anthesis)
Pericarp
Seeds (5d Post Anthesis)
Seeds (7d Post Anthesis)
Seeds (10d Post Anthesis)
Septum/Seed (4d Post Anthesis)
Septum (7d Post Anthesis)
Septum (10d Post Anthesis)
Seedling (Leaves)
Seedling (Roots)
Solyc00g023270.2.1 (Solyc00g023270.2)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc00g187055.1.1 (Solyc00g187055.1)
1.86 - - - - 0.5 - - - 4.72 - - -0.69 - - - - - - - - - - - - -0.56 - - - - - - - 0.34
Solyc01g011500.1.1 (Solyc01g011500.1)
- 2.77 - 4.7 - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc01g020376.1.1 (Solyc01g020376.1)
- - - - - 0.49 - - - - - - - 1.91 - 4.85 - - - - - - - - - - - - - - - - - -
Solyc01g056240.1.1 (Solyc01g056240.1)
- - - - - 1.69 2.93 3.49 - - 3.57 - - - - - - - - - - - - - - - - - - - - - - -
Solyc01g073970.3.1 (Solyc01g073970.3)
-1.24 2.76 0.19 1.88 -2.37 -0.53 -8.54 3.0 -0.55 -1.7 0.91 1.81 -0.41 2.01 - - -10.08 - -12.23 -5.41 -10.26 -6.82 -1.91 -2.89 -3.57 -5.74 -1.84 -3.02 -3.5 -6.67 -8.43 -6.58 - -0.24
Solyc01g086755.1.1 (Solyc01g086755.1)
0.91 - - - 3.56 3.69 - 1.4 - - 0.31 - - - - - - - - - - - - - -0.3 - - 0.24 0.64 - - - - -
Solyc01g086800.3.1 (Solyc01g086800.3)
-2.12 1.76 -1.77 0.67 -0.9 0.91 -7.62 1.46 -3.35 -1.38 1.25 2.39 -0.14 2.25 - - - - - -5.85 -2.17 -7.69 1.38 0.38 -0.31 -5.92 1.26 0.24 -0.79 -6.55 -8.2 -8.26 - -1.22
Solyc01g095500.3.1 (Solyc01g095500.3)
-0.05 -3.03 -0.49 -2.0 0.32 0.1 -1.8 -0.4 -0.11 -0.08 1.37 0.86 0.09 1.7 -3.92 -4.68 -4.76 - -8.6 -0.33 1.56 0.01 -0.21 0.4 1.37 -2.57 -0.75 -0.22 0.49 -0.68 -0.66 0.28 -2.9 1.44
Solyc01g108520.2.1 (Solyc01g108520.2)
-1.09 -2.48 -2.41 -3.46 -0.17 2.33 0.73 1.63 0.82 1.21 0.69 0.02 1.03 -0.38 0.42 0.14 0.01 -6.08 -4.98 -1.58 0.12 -0.76 -5.67 -2.04 -2.45 -0.03 -5.97 -1.82 -1.82 -0.23 -0.48 -1.73 -3.33 1.78
Solyc02g005490.3.1 (Solyc02g005490.3)
4.0 -0.74 -0.85 -1.48 -1.34 0.58 -0.26 -3.71 0.4 -2.12 -1.92 -1.54 0.88 1.84 0.0 -0.45 -0.16 - - -4.88 - -2.89 -5.27 -3.44 -3.26 - -1.54 -2.39 -0.56 -2.69 -2.24 -1.72 -5.02 0.19
Solyc02g014847.1.1 (Solyc02g014847.1)
- - - - -0.44 - - - - - - - - - - - - - - 0.57 4.33 - - - - 2.65 - -0.53 0.63 - - - - 1.67
Solyc02g014850.1.1 (Solyc02g014850.1)
- - - - - - - - - - - - - - - - - - - - - - - - - 5.09 - - - - - - - -
Solyc02g065115.1.1 (Solyc02g065115.1)
- - - - - - - - - - - - - - - - - - - - - - - 5.09 - - - - - - - - - -
Solyc02g085260.1.1 (Solyc02g085260.1)
0.37 -4.58 -2.93 -5.5 - 0.42 - -3.42 -3.22 2.45 -3.0 -0.37 -2.2 3.79 -0.72 -0.12 -0.35 -4.3 -7.34 -3.66 -3.25 -4.15 -4.85 -2.45 -1.59 -0.02 -4.22 -0.75 -0.15 -4.77 -4.78 -1.2 -4.25 2.11
Solyc03g025860.3.1 (Solyc03g025860.3)
-0.1 -2.63 0.48 -0.58 0.37 0.77 - 0.45 0.29 1.56 -1.08 -1.83 -3.02 -1.23 -0.43 -0.6 -0.65 - - -2.01 -0.19 0.45 0.62 0.71 0.86 -4.42 0.24 0.08 0.27 0.67 0.54 1.4 -2.22 1.07
Solyc03g034206.1.1 (Solyc03g034206.1)
1.6 -0.38 -2.27 -3.47 1.27 1.0 -0.98 2.06 -1.94 -2.51 -5.99 -7.01 -3.88 -3.11 -7.07 -7.21 -7.87 - - -6.98 -4.09 1.57 -0.34 0.43 -0.36 - 0.52 0.84 -0.17 1.74 1.8 0.52 -2.41 0.72
Solyc03g044700.1.1 (Solyc03g044700.1)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc04g025230.1.1 (Solyc04g025230.1)
- - - - - 2.22 - - - - - - 0.66 - - - - - - - - - - - - 4.8 - - - - - - - -
Solyc04g025240.2.1 (Solyc04g025240.2)
- - - - - 3.44 - - 3.6 - -1.49 -2.76 -4.32 -1.88 - - - - - - - - - - - 3.34 - -5.6 - - - -4.26 - -
Solyc04g049610.3.1 (Solyc04g049610.3)
1.21 - -0.35 - -1.34 -2.45 - - 1.24 - 1.11 1.13 1.15 0.52 -0.93 - - - - 1.84 2.11 -0.52 -0.47 -0.93 0.39 -0.49 -0.18 -0.5 1.35 - -1.77 1.65 - -
Solyc04g056470.1.1 (Solyc04g056470.1)
- - - - 3.08 3.95 - - - - 3.33 - - - - - - - - - - - - - - - - - - - - - - -
Solyc04g074070.2.1 (Solyc04g074070.2)
- - - -4.13 0.24 0.86 0.69 2.08 2.1 2.15 -0.91 -2.58 -1.69 -2.02 1.56 -0.91 0.0 -1.38 -0.27 - 0.27 -3.98 1.71 0.96 0.21 - 0.56 -2.81 -5.71 - -4.17 - -5.5 -3.78
Solyc04g076600.2.1 (Solyc04g076600.2)
0.34 -1.98 -0.96 -2.12 -5.15 1.24 -1.28 -2.81 0.33 0.14 0.41 0.33 0.45 1.52 1.34 -0.26 0.94 -2.84 -4.32 -2.18 -2.04 -0.42 -0.64 -0.16 -0.12 -0.92 -0.58 1.1 1.85 -0.41 -1.01 0.61 -6.0 -0.42
Solyc04g081600.2.1 (Solyc04g081600.2)
-1.89 - - - 3.73 2.44 - - - - - - -4.26 -2.45 - - - - -4.92 -3.67 -4.03 -1.52 -3.6 -2.9 -0.54 - 0.71 1.53 2.5 0.35 -0.63 0.4 - -
Solyc04g081640.2.1 (Solyc04g081640.2)
- - 0.62 - 0.55 4.71 0.03 - -1.31 -1.47 - - - -2.34 - - -0.63 - - - - - -1.63 - -3.34 - -0.18 -2.35 -2.96 - - - - -0.92
Solyc04g081710.2.1 (Solyc04g081710.2)
- - - - 4.58 3.16 - - -7.27 - -6.94 - - -6.44 - - - -7.99 - - -7.47 -4.57 - -6.25 -4.32 -3.62 -4.99 -2.31 -1.14 -4.38 -5.18 -3.32 - -
Solyc04g081720.1.1 (Solyc04g081720.1)
-4.05 - - - 4.23 3.92 - - - - - - - -5.06 - - - - - - - - - - - - - -7.58 -5.56 - - - - -
Solyc04g082845.1.1 (Solyc04g082845.1)
-0.13 -0.67 -2.22 -3.0 0.1 -0.25 1.29 -0.71 0.48 0.1 0.12 -0.27 0.9 0.56 0.55 0.56 0.55 -3.1 -1.79 -1.88 -0.81 0.19 0.05 0.01 -0.34 -0.23 0.6 0.58 0.46 0.12 0.44 0.01 -1.61 -0.36
Solyc04g082860.2.1 (Solyc04g082860.2)
0.7 0.38 0.95 -0.65 -0.14 -0.3 -0.79 -0.97 -1.1 -0.31 -0.19 -1.17 0.24 0.97 -2.54 -4.56 -2.54 -4.58 - -0.14 0.44 0.02 -0.7 -0.67 -0.23 2.06 -0.33 -0.11 0.26 0.14 0.07 0.15 -2.9 1.88
Solyc05g010750.3.1 (Solyc05g010750.3)
- -0.24 -1.63 -0.8 3.69 1.11 -2.25 2.4 -1.04 -2.09 - -1.79 -2.14 - - - -1.12 - - 1.24 -1.29 -1.23 -1.05 -0.8 -1.52 - 0.24 -1.01 -0.87 -0.06 -1.07 -2.41 - 0.61
Solyc05g018515.1.1 (Solyc05g018515.1)
0.13 - - - - 4.72 - - - - - - - - -1.96 - -1.34 - - 1.24 - -2.14 - -2.6 - - - -0.96 -1.26 -1.49 -1.71 -1.49 - 0.32
Solyc05g024360.1.1 (Solyc05g024360.1)
0.94 - -0.57 0.29 1.67 1.48 - -0.72 -1.17 0.44 -2.38 - - - -2.03 -0.83 -0.22 - - -2.24 -0.76 1.3 0.74 0.64 0.96 - -0.2 0.15 -0.5 0.6 0.37 0.95 -0.84 1.81
Solyc05g024370.1.1 (Solyc05g024370.1)
0.0 - -0.38 0.36 0.34 0.62 - -3.87 -0.39 0.93 -3.81 - - - -1.63 -1.55 -2.54 - - -1.1 0.92 0.9 0.84 0.75 1.23 -1.18 0.31 -0.23 -0.02 0.37 0.16 1.13 -3.3 2.64
Solyc05g024373.1.1 (Solyc05g024373.1)
-0.37 - -0.03 1.04 -0.63 -0.27 - - -0.06 0.39 -2.28 - - - - - -3.71 -3.46 - -1.42 0.16 1.02 1.35 0.65 1.16 0.35 0.9 -0.3 -0.17 0.69 0.66 0.97 - 2.63
Solyc06g006015.1.1 (Solyc06g006015.1)
1.22 - - - 4.09 2.09 - - - 1.31 - -1.48 - - - - - - - - -0.47 - - - - - - - - - - - - 2.77
Solyc06g053265.1.1 (Solyc06g053265.1)
0.71 0.96 - - - -1.65 - 1.03 - 1.67 - - -1.09 2.7 - 0.89 1.64 - - - -0.11 - - -1.98 -1.64 3.14 - -0.2 -1.3 - - -0.46 - -0.65
Solyc06g062710.1.1 (Solyc06g062710.1)
- - - - - 1.48 - - - 1.65 0.52 - 3.25 - 1.5 2.36 - - -0.08 - - - - -0.8 - 0.79 - 0.56 -0.21 - 1.83 - - -
Solyc06g073030.2.1 (Solyc06g073030.2)
-0.24 -1.4 -0.72 -1.69 -0.02 0.81 -0.85 -0.77 2.58 1.37 1.26 1.71 1.15 2.24 -0.51 -3.25 -1.74 - -6.05 -1.83 -1.0 -1.94 -0.69 -1.16 -2.06 -3.92 -2.16 -1.26 -0.4 -2.37 -1.8 -1.53 -3.86 -0.09
Solyc06g073033.1.1 (Solyc06g073033.1)
1.16 -3.64 -1.78 -3.63 -0.58 0.75 -2.16 -0.2 3.07 2.15 0.79 1.33 0.55 1.01 -0.54 -1.45 -1.58 - - -3.46 -1.28 -1.92 -1.32 -0.89 -2.26 -2.08 -1.33 -1.06 -0.79 -3.89 -0.04 -0.83 -4.07 -0.68
Solyc06g083160.1.1 (Solyc06g083160.1)
0.94 2.5 2.57 2.37 1.51 0.15 -1.02 -3.3 -0.56 -1.22 -3.12 -2.39 -1.17 2.25 -3.26 - -3.4 -1.29 - -3.15 -3.36 -3.29 -3.69 -3.68 -3.3 - -5.08 -5.91 -4.68 -4.64 -3.75 -4.2 -0.7 1.08
Solyc07g005410.3.1 (Solyc07g005410.3)
2.92 0.38 1.15 -1.13 -1.29 0.38 -3.83 -1.96 -1.43 -0.99 -1.09 -0.49 1.07 1.77 -2.5 -1.94 -3.99 - - -0.59 -0.86 -2.7 -3.23 -2.35 -1.51 -1.68 -1.61 -0.48 -0.01 -2.44 -3.0 -0.85 -1.25 2.75
Solyc07g006940.2.1 (Solyc07g006940.2)
1.95 - - - 1.56 4.55 - - - 0.41 - - -0.44 -0.03 - - - - - - -0.59 - - - - - - - - - - - - -
Solyc07g052170.1.1 (Solyc07g052170.1)
-3.21 - 0.55 -2.74 -4.07 1.75 -0.36 1.37 0.78 -0.84 -2.64 - - - -1.9 - -2.78 - - -0.76 -2.09 0.66 -2.3 0.07 0.52 - -2.9 -1.56 -0.12 1.18 0.59 2.75 0.79 1.97
Solyc08g045770.1.1 (Solyc08g045770.1)
3.1 - - - 2.24 0.91 - - - - - - - - - - 2.63 - - - - - - - - - - - - - - - - 3.66
Solyc08g061840.1.1 (Solyc08g061840.1)
- - - - 1.54 -0.32 - - - - - - - - - 4.44 2.58 - 1.34 - - - - - - - - - - - - - - -
Solyc08g066935.1.1 (Solyc08g066935.1)
- - 1.32 - - 1.08 - - 0.99 - - 1.02 0.15 2.17 - - 0.62 - - - - - - - - 4.19 - - - - - - - -
Solyc08g067123.1.1 (Solyc08g067123.1)
- - - - 0.23 0.72 - - - - - - - - - - - - 3.74 0.69 - - - - - 0.25 1.12 2.21 1.29 - - 2.52 - -
Solyc08g067580.2.1 (Solyc08g067580.2)
-0.61 -2.01 -2.36 -3.88 0.68 0.97 -3.28 -0.98 -1.3 2.32 0.69 1.18 0.39 0.97 0.65 -0.48 -1.68 -3.6 -4.38 -0.57 -2.35 0.06 -1.27 -0.76 -0.64 0.29 -0.77 -0.6 -0.82 0.94 0.18 0.93 -1.62 0.62
Solyc08g067745.1.1 (Solyc08g067745.1)
- - - - - 3.63 2.06 - - - - - - - - - - - - - - - - - - - 2.34 - - - - - 3.63 -
Solyc08g078710.2.1 (Solyc08g078710.2)
-3.82 1.93 -0.35 1.75 -1.89 -0.47 0.02 -1.28 3.32 -0.96 -1.77 -0.56 -1.95 0.86 -2.55 -3.71 -2.45 - - -2.35 -1.04 - -2.87 -2.15 -1.11 - -0.36 0.08 0.54 -2.31 -3.34 -0.43 -4.79 1.89
Solyc08g078790.1.1 (Solyc08g078790.1)
-0.14 0.04 0.93 0.0 -2.06 0.13 -1.72 -0.49 -0.22 1.16 -0.92 -0.67 -0.59 0.82 0.32 0.39 0.4 -1.08 -1.25 0.21 -0.28 -0.38 -0.35 -0.39 0.11 0.41 -0.22 0.53 0.92 -0.15 -0.33 0.36 -1.47 0.14
Solyc09g059210.1.1 (Solyc09g059210.1)
-0.92 - - - - 3.8 - - 2.03 3.91 - - - - - - - - - - - - - - - - - - - - - - - -1.27
Solyc09g065140.1.1 (Solyc09g065140.1)
-1.23 0.13 -3.71 - -0.8 3.69 -3.34 1.62 1.23 -0.47 -0.34 -1.2 -1.08 0.08 1.85 0.33 0.23 - - - -4.05 -3.72 -4.62 -3.63 -5.86 - 0.42 -2.86 -3.97 -3.34 -1.82 - -1.18 0.32
Solyc10g008180.2.1 (Solyc10g008180.2)
-0.13 -0.92 -0.23 0.01 -0.37 1.36 1.58 -1.12 4.02 -0.03 -2.91 -1.36 -2.35 0.09 -0.91 -1.43 -0.76 -5.43 -5.5 - -3.67 -2.62 - -3.05 -2.32 -3.58 -3.34 -1.53 0.2 -3.56 -4.03 -2.92 -2.77 -0.44
Solyc10g048090.1.1 (Solyc10g048090.1)
- - - 5.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc10g076555.1.1 (Solyc10g076555.1)
2.04 - - - - 0.6 -1.56 - -0.17 3.18 - 2.25 -0.96 3.15 - - - - - - - - - - - - - -1.38 - - - -0.9 - 1.59
Solyc10g082060.1.1 (Solyc10g082060.1)
- 1.99 - - - 2.45 - 2.39 1.49 -1.09 - - - - -0.36 - - - - - - -0.63 -4.33 -0.94 -1.25 - 1.2 2.14 1.68 0.63 -0.02 -0.81 -1.14 -2.84
Solyc11g021050.1.1 (Solyc11g021050.1)
- - - - - 5.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc11g039710.1.1 (Solyc11g039710.1)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc11g044220.1.1 (Solyc11g044220.1)
- 3.29 1.86 2.45 -3.2 1.75 - - -1.8 0.13 -1.35 2.03 - 2.07 - - - - - -2.8 - - -1.58 -1.57 -1.65 - -2.73 -1.71 - - - - - -
Solyc11g068390.1.1 (Solyc11g068390.1)
- -3.28 -0.16 - 4.16 3.22 - - -0.84 -3.25 -1.45 -5.27 -3.31 -4.19 -3.36 1.38 -1.3 - - -3.41 - - - -5.48 - - - -4.95 - - -3.52 - -5.57 0.29
Solyc11g073170.1.1 (Solyc11g073170.1)
0.12 -1.81 1.28 -0.49 0.86 0.45 - - -0.55 - - - -1.17 - 0.54 1.04 2.22 - - 0.59 -1.78 -1.16 - - -3.21 3.59 -2.23 - - -1.41 -0.3 - - 0.3
Solyc12g009065.1.1 (Solyc12g009065.1)
-0.04 - -3.05 - -4.14 2.79 - 2.16 0.4 -0.12 0.01 0.9 0.54 2.61 - -2.03 -1.53 -3.12 -0.23 -0.14 1.39 -4.08 - -2.4 -2.87 - -2.07 -3.7 -3.91 -3.36 - -2.73 0.58 0.27
Solyc12g016155.1.1 (Solyc12g016155.1)
- - - - - -4.29 1.0 - -0.81 1.6 - - -2.97 - 2.71 2.68 0.95 3.1 1.82 -3.93 - - - - - - - -2.77 -0.82 - - - -1.09 -
Solyc12g016160.1.1 (Solyc12g016160.1)
- - - - - -1.35 2.31 - - 0.57 - - - - 2.04 0.94 1.4 3.21 1.7 0.21 - - - - - - - 0.58 1.75 - - - - -
Solyc12g016165.1.1 (Solyc12g016165.1)
- - - - - -1.42 3.51 - - 3.28 - - - - 1.58 - - 2.76 - - - - - - - - - - 1.46 - - - - -
Solyc12g036727.1.1 (Solyc12g036727.1)
3.56 - - -1.64 - 3.03 - -1.66 0.9 - -1.4 - - - - - - - - -3.69 -0.96 -2.72 - -3.62 - 3.11 -2.21 -2.54 -3.11 - - - -0.35 -1.22
Solyc12g036740.1.1 (Solyc12g036740.1)
4.27 - - - - 2.81 -1.1 -0.26 - 0.66 - - - - - - - - - - - - - -2.8 -1.78 - -0.88 - -1.21 - -0.16 - - 1.36
Solyc12g038100.1.1 (Solyc12g038100.1)
- - - - - - 2.11 - - 3.84 - - 1.11 - - - - - - 0.23 - - - - - - - 0.61 1.73 - - 2.02 - 1.64
Solyc12g042750.2.1 (Solyc12g042750.2)
- - - - - 2.64 -3.37 - - - - - - - - - - - - - - - - - - 4.77 - -3.96 -3.72 -2.7 - - - -4.6
Solyc12g043170.1.1 (Solyc12g043170.1)
- - - - - 3.91 - - - - - - - - - - - - - - - - - - - 4.25 - - - - - - - -
Solyc12g062733.1.1 (Solyc12g062733.1)
- - - - - - - - - - - - - - - - - - - - 3.81 - 1.12 - - - - -0.66 4.1 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.