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Heatmap: Cluster_38 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - 0.45 - - - - - - - - - - 2.41 - 0.08 0.06 -0.0 - 3.36 2.04 -0.18 -0.06
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- -1.31 - - 0.04 -1.43 -1.44 -1.56 - 0.02 1.83 0.23 - 0.91 0.04 - - -1.11 -1.8 - 0.43 -0.26 2.97 -0.84 1.43 -0.37
- - - - - 3.0 - - - - - - - - - - - - - - 2.54 - 3.61 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - 0.96 - - - - - - - - - 0.71 - 0.77 - 0.29 0.52 0.56 1.44 - 2.82 0.78 0.26 1.96
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - 1.34 - - - - - - - 3.32 0.76 - - - - 3.56 - - -
- - - -1.17 - - -1.04 - - -1.36 -0.32 - - - - -1.27 -1.28 -0.81 - - 3.04 0.04 2.73 0.94 1.45 0.98
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - 2.96 - - - - - - 4.19 - - -
-4.35 - -6.2 -2.46 -2.62 -4.37 -3.44 -3.87 -3.63 -2.83 -2.23 -4.1 - - - -4.66 -4.97 -2.37 -6.55 - 3.52 1.1 2.18 1.36 1.5 0.12
-0.18 - - - - - - 1.02 - 0.08 0.09 - - 0.48 0.04 - - 2.13 - -0.25 - - 3.56 - - 0.62
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - 2.9 - - - - - - - - - - - - - - - - - 4.21 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
-1.15 -1.37 -1.91 0.43 0.29 -1.29 -1.36 -0.77 -0.84 -0.78 -0.21 -1.38 -3.27 -3.78 -4.1 -2.36 -3.2 -0.96 -1.89 -3.24 2.5 2.09 1.45 0.46 1.2 -0.37
- - - - - - - - - - - - - - - - - - - - - - - - - -
- 1.11 - - 0.62 - - - - -0.2 -0.15 - - 0.27 - - - - - - 2.42 - 3.58 0.52 -0.76 -
- - - - - - - - - - - - - - - 3.09 - - - - 2.5 - 3.57 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - 0.62 0.64 - - - 0.71 - - - - 1.59 - - - 3.44 0.22 2.4 - -0.0 -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 1.03 - - - - - 0.98 - - - - - 1.06 0.2 1.89 3.76 - - 0.56
- - - - - - - - - - - 2.68 - - 2.5 - - - - - - - 3.8 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
-2.56 -3.63 - -2.11 -4.58 -3.02 -4.76 -3.88 -3.75 -2.14 -1.66 -4.67 -4.87 -4.35 - - -2.6 -1.22 -1.46 -2.14 2.83 1.92 2.82 1.62 1.11 -3.17
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - 1.82 3.65 2.82 1.54 -
- - - - - - - - - - - - - - 2.0 - - - - - 3.24 - 3.65 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.