Heatmap: Cluster_50 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots
Roots (Meristematic zone)
Roots (Differentiation zone)
Roots (Elongation zone)
Hypocotyl
Leaves
Meristem (Vegetative)
Apical Meristem
Floral Buds
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Style (1d before flowering)
Style (1d after flowering)
Style+pollen (1d after flowering)
Pollen (Germinated)
Pollen (Mature/Ungerminated)
Fruits (Breaker stage)
Fruits (Mature green)
Pericarp/Exocarp (4d Post Anthesis)
Pericarp (5d Post Anthesis)
Pericarp (7d Post Anthesis)
Pericarp (10d Post Anthesis)
Pericarp
Seeds (5d Post Anthesis)
Seeds (7d Post Anthesis)
Seeds (10d Post Anthesis)
Septum/Seed (4d Post Anthesis)
Septum (7d Post Anthesis)
Septum (10d Post Anthesis)
Seedling (Leaves)
Seedling (Roots)
Solyc01g006840.3.1 (Solyc01g006840.3)
1.99 -7.19 4.49 2.34 -3.03 -4.41 - -2.85 -4.49 - - - - -8.12 -1.68 -2.86 -3.95 - -8.97 - - -6.45 -4.75 -2.03 -4.33 -4.04 -2.8 -3.38 -7.03 -3.86 -3.86 -7.58 -6.86 -0.36
Solyc01g009215.1.1 (Solyc01g009215.1)
1.87 -0.26 3.67 0.45 1.28 -4.32 - - -1.73 - -3.28 -3.36 - - -1.32 -1.97 -3.89 - -6.08 -2.69 -1.78 -3.24 -3.69 -3.77 -3.7 - -3.9 -3.26 -3.05 -3.99 -2.24 -0.2 - 3.25
Solyc01g009715.1.1 (Solyc01g009715.1)
1.61 1.61 3.01 2.36 0.44 -0.83 -0.47 -0.51 -0.35 -0.25 -2.37 -2.34 -4.68 -5.0 -0.49 -1.68 -1.32 -1.47 - -6.39 -3.98 -2.4 -1.75 -2.41 -3.25 -3.99 -2.64 -2.92 -5.27 -1.12 -1.35 -1.44 -3.26 2.3
Solyc01g107590.3.1 (Solyc01g107590.3)
1.43 -6.4 2.12 -0.39 0.98 -0.31 -8.49 -0.44 -0.5 -0.98 -1.0 -3.59 -4.82 -3.02 0.24 -0.59 -0.6 -8.21 -9.74 -5.08 0.35 -0.72 -0.07 -0.07 -0.27 -3.48 0.87 1.03 0.81 -0.04 -0.17 -0.2 -1.38 2.24
Solyc01g107910.3.1 (Solyc01g107910.3)
2.16 -5.79 3.27 0.39 0.1 -1.49 -7.34 -1.55 1.63 -0.46 -4.5 -5.68 -5.2 -5.08 -0.83 -0.35 -1.21 -10.03 -11.81 -4.43 -1.57 -1.43 -1.98 -1.8 -1.59 -2.88 -2.21 -1.64 -1.19 -1.36 -1.48 -0.45 -3.09 2.74
Solyc01g109480.3.1 (Solyc01g109480.3)
2.43 -2.11 3.41 2.01 -1.18 -3.21 -6.66 -0.36 -2.09 1.31 -4.51 -5.82 -5.45 -5.66 -1.38 -4.18 -2.76 - - -4.0 -6.87 -4.02 -4.06 -3.68 -4.2 -5.15 -1.65 -2.58 -3.33 -2.05 -1.78 -2.05 -3.75 2.85
Solyc01g112070.3.1 (Solyc01g112070.3)
1.2 0.59 3.56 1.2 -2.44 -0.85 -0.19 -1.15 -0.42 0.86 0.21 0.03 -0.37 1.12 -0.28 -0.41 0.18 -4.81 -5.98 -2.4 -3.04 -3.38 -2.97 -3.06 -4.86 -2.34 -2.48 -2.05 -2.37 -2.95 -2.27 -3.31 -3.23 0.61
Solyc02g066960.3.1 (Solyc02g066960.3)
-0.65 -7.08 4.27 1.04 -0.54 -7.18 -7.53 -5.61 -3.07 -3.57 - -5.29 -6.91 - -4.49 -4.69 -5.7 - - - - -0.85 -1.48 -0.78 -0.75 -9.59 1.22 0.76 -1.0 -0.2 -0.4 -1.56 - 1.21
Solyc02g067430.3.1 (Solyc02g067430.3)
3.24 2.16 2.95 3.0 -2.24 -9.73 - - - - -6.52 - - - - - -8.2 - - - - - - - - - - - - - - - - 2.07
Solyc02g067700.1.1 (Solyc02g067700.1)
2.17 -4.61 3.08 0.26 1.91 -0.78 -1.71 -0.5 -1.16 0.28 0.93 -1.32 -1.13 -2.89 -2.55 -2.22 -1.77 - -8.26 -2.97 -2.48 -4.2 -3.31 -3.49 -3.14 -3.5 -4.42 -3.75 -4.05 -4.22 -4.49 -0.62 -1.36 2.83
Solyc02g068490.3.1 (Solyc02g068490.3)
1.45 -2.04 2.28 0.02 1.17 -0.42 -0.14 -1.56 -1.09 0.09 -0.7 0.2 0.51 0.47 -0.74 -0.99 -0.78 1.03 -0.16 -0.92 -0.13 -1.89 -2.0 -1.92 -1.87 -0.51 -1.78 -1.74 -1.52 -1.81 -1.76 -1.33 -2.39 2.29
Solyc02g077260.3.1 (Solyc02g077260.3)
1.54 -3.83 3.68 1.45 2.12 -0.81 -3.28 -1.03 -1.41 -2.38 -3.25 -2.77 -1.6 -1.1 -4.47 -7.79 -6.94 - - -5.78 -0.79 -2.87 -3.25 -2.86 -3.21 -5.14 -1.11 -1.39 -1.73 -1.56 -1.92 -3.19 -4.28 2.4
Solyc02g084880.3.1 (Solyc02g084880.3)
2.11 -4.37 3.56 1.16 1.01 -1.31 - -1.04 -0.32 0.12 -3.33 -2.84 -6.02 - -1.55 -2.35 -2.27 - - -6.0 -5.6 -0.71 -2.51 -1.92 -3.18 - -1.47 -1.9 -2.83 0.3 0.02 -0.08 -3.29 2.19
Solyc02g093090.1.1 (Solyc02g093090.1)
1.77 -6.83 3.7 0.29 0.34 -0.95 -4.45 -1.41 -0.96 -2.79 -3.04 -3.3 -2.83 -4.0 -3.63 -5.16 -5.52 - -9.94 -6.2 -0.65 -2.58 -0.41 -2.29 -3.35 -5.54 -3.6 -4.21 -4.22 -3.18 -2.24 -3.28 -2.41 3.35
Solyc02g093480.3.1 (Solyc02g093480.3)
0.48 0.32 3.24 2.18 -1.16 -2.51 -0.46 -1.29 1.12 -2.15 -0.09 0.46 -2.98 -1.83 -3.85 -4.7 -4.42 -0.6 -1.28 -5.57 -0.44 -0.06 0.57 0.48 0.27 - -1.83 -1.43 -1.4 -1.31 -0.76 -1.21 -4.93 -0.03
Solyc03g006230.1.1 (Solyc03g006230.1)
0.63 - 4.12 3.83 -2.53 -4.58 - - -5.13 - - - - - - - - - - - - - - - - - - - - - - - - -0.71
Solyc03g043920.3.1 (Solyc03g043920.3)
0.82 -2.99 3.76 2.74 0.67 -4.07 - -6.6 -7.51 - -6.48 -6.15 -8.7 -7.62 -7.16 -4.58 -3.96 - - -4.73 -1.97 -4.53 -4.14 -3.54 -4.42 -1.75 -3.77 -4.88 -5.73 -4.75 -3.86 -4.71 - 3.17
Solyc03g070380.3.1 (Solyc03g070380.3)
1.44 -0.5 4.3 2.92 -3.66 -2.89 -5.72 -2.79 -2.13 -5.01 -6.95 -8.13 - - -8.46 -8.55 -6.74 - -6.88 - - -5.97 -7.84 -7.17 -7.89 - -7.09 -8.0 -9.09 -6.75 -6.94 -9.11 -6.24 1.36
Solyc03g082450.3.1 (Solyc03g082450.3)
1.58 -0.47 2.32 0.95 0.88 -1.16 1.43 -1.36 0.21 -0.1 0.37 -1.08 -0.48 -1.61 -1.26 -1.84 -1.55 -7.56 - -5.26 -1.33 -1.68 -0.76 -1.68 -2.87 -3.14 -1.82 -2.44 -2.84 -2.26 -1.18 -2.33 -4.66 3.12
Solyc03g097650.3.1 (Solyc03g097650.3)
-0.51 -2.95 1.64 0.12 0.37 0.06 - 0.0 0.58 1.09 -2.86 -2.51 -4.53 -7.17 1.17 0.3 0.71 - -8.99 -1.95 -2.14 0.65 -1.11 -0.05 0.67 -3.98 -0.45 -0.3 -0.6 0.91 0.59 1.41 -2.23 1.56
Solyc03g115450.1.1 (Solyc03g115450.1)
1.4 -1.2 2.05 1.28 -0.45 -0.36 -6.24 -0.69 -0.43 -0.59 -3.59 -4.78 -3.96 -0.43 -0.93 -0.81 -2.45 - - -5.69 0.68 -1.1 -2.06 -1.54 -1.26 -3.05 1.03 0.67 0.65 0.27 -0.84 -0.98 -4.09 2.97
Solyc03g115690.1.1 (Solyc03g115690.1)
0.64 -1.37 4.04 0.78 -1.38 -2.7 -10.58 -1.31 0.47 0.96 -4.53 -4.67 -7.43 -8.24 -3.89 -4.28 -4.23 - -10.1 -3.23 1.58 -1.76 -2.71 -2.49 -2.76 -1.72 -2.6 -1.94 -1.65 -1.42 -1.69 -1.13 -2.07 1.59
Solyc04g008155.1.1 (Solyc04g008155.1)
0.3 2.24 3.91 3.38 -3.5 -7.32 -0.79 -3.84 - - - - - - - - - -1.68 -5.69 - - - - - -5.58 - - - - - - - - 0.53
Solyc04g078990.3.1 (Solyc04g078990.3)
0.98 -6.19 4.21 2.37 -0.35 -2.82 - -3.35 -3.51 -3.9 -4.18 -6.03 -7.28 -5.0 -5.33 -6.95 -7.78 - - - -3.85 -3.87 -4.34 -4.62 -5.29 - -5.56 -5.43 -5.89 -4.24 -3.51 -4.42 -7.8 2.72
Solyc05g005040.3.1 (Solyc05g005040.3)
-3.06 -4.34 3.9 2.88 -7.24 -5.39 - - -1.08 -4.59 - -5.09 - - -3.5 -4.85 -6.72 -8.17 - - - - -4.72 -5.34 -6.01 - -3.1 -3.9 -7.54 - -4.56 - - 3.39
Solyc05g005830.3.1 (Solyc05g005830.3)
0.89 - 3.84 1.99 1.87 -2.4 - -2.21 -0.59 -3.78 -5.78 - - - -3.92 - -3.45 - - - - -3.68 -5.7 -3.65 -3.15 - -0.69 -1.09 -2.26 -3.2 -2.68 -2.89 -2.51 2.74
Solyc05g009700.3.1 (Solyc05g009700.3)
1.8 -5.35 2.08 0.58 -0.8 -2.14 -3.33 -1.92 -1.98 -0.68 -0.92 -1.69 -0.22 -0.33 -1.32 -0.46 1.13 - - -1.88 -0.91 -2.1 -2.47 -1.87 -1.99 -2.99 0.56 0.08 0.5 -1.1 -1.4 0.44 -1.04 3.08
Solyc05g051800.3.1 (Solyc05g051800.3)
1.18 -0.99 2.53 0.68 -0.72 -0.78 0.07 -2.59 -0.49 -0.06 1.12 0.78 -0.35 -0.35 -2.41 -2.6 -2.34 - - 0.05 -0.29 -0.52 -0.89 -0.77 -0.67 1.89 -1.24 -0.95 -0.8 -0.7 -0.5 -0.31 -3.77 1.04
Solyc05g054850.1.1 (Solyc05g054850.1)
1.55 -0.36 4.05 1.07 -0.41 -3.67 -2.61 -3.9 -2.6 -2.04 -5.46 -5.39 -0.68 -6.64 -5.79 -5.57 -7.2 - - -4.97 -3.18 -2.94 -5.45 -3.36 -2.73 -3.84 -7.72 -4.08 -3.19 -1.99 -2.05 -0.15 -2.94 2.84
Solyc06g011350.3.1 (Solyc06g011350.3)
0.6 -6.81 3.96 2.09 -0.89 -2.38 -3.64 -5.8 -4.44 -1.66 -7.62 -6.74 -4.7 -4.67 -5.57 -4.77 -5.06 - -14.66 -4.34 -3.55 -0.64 -4.25 -1.77 -0.98 -2.87 -1.62 -0.89 -0.86 -0.24 -0.84 0.2 -2.55 2.43
Solyc06g051350.3.1 (Solyc06g051350.3)
0.89 -6.12 1.92 -0.62 1.66 -0.53 -5.47 0.21 -0.13 -0.71 -2.22 -2.96 -4.29 -3.38 -2.89 -4.32 -4.59 - -10.17 -8.71 0.21 1.2 0.37 0.6 0.5 - -0.6 -0.28 -0.19 1.09 0.79 1.11 -2.87 2.08
Solyc06g066830.3.1 (Solyc06g066830.3)
1.45 -6.2 4.33 1.93 -3.16 -1.54 -6.87 -1.63 -4.0 -6.31 - - - - -8.27 -8.29 -9.22 - - -12.1 - -2.56 -10.99 -5.55 -4.51 - -6.35 -3.43 -4.14 -2.31 -2.8 -1.0 -1.71 2.28
Solyc06g067870.3.1 (Solyc06g067870.3)
1.62 -4.37 4.33 1.29 0.48 -1.64 -8.33 -2.91 -8.34 -4.93 -10.51 - -8.9 - -7.15 -6.55 -7.73 - - - - -9.01 -7.46 -8.52 -7.79 - -5.94 -7.35 -9.85 -7.9 -6.99 -10.6 -5.43 2.68
Solyc06g068650.3.1 (Solyc06g068650.3)
1.57 -2.99 3.47 0.72 -0.6 -0.83 -1.65 -1.29 0.31 -0.04 -0.06 0.48 -0.7 -1.02 -0.17 -0.58 -0.79 -11.17 - -6.1 -4.09 -2.23 -0.24 -1.54 -2.61 -5.21 -1.84 -2.51 -2.79 -2.45 -2.02 -1.99 -2.36 2.39
Solyc06g068930.2.1 (Solyc06g068930.2)
2.86 0.76 3.61 2.87 -4.37 -8.34 - - -5.97 - - -9.45 -5.63 -2.05 - - - - - -6.88 -2.77 -5.08 -4.76 -5.25 -5.15 -5.93 -0.82 -1.15 -1.11 -3.01 -3.38 -4.72 - 1.69
Solyc07g008550.3.1 (Solyc07g008550.3)
1.74 0.69 2.93 1.75 -0.43 -0.7 -6.31 -3.35 1.33 -0.48 0.26 -0.61 1.68 0.67 -0.75 0.01 -0.06 - - -4.47 - -3.68 -1.0 -2.48 -3.34 -2.13 -2.3 -2.59 -2.28 -4.01 -3.55 -6.75 -5.13 1.17
Solyc07g018430.3.1 (Solyc07g018430.3)
2.28 -4.87 4.52 1.97 -1.65 -7.15 -5.28 - -5.05 -3.39 -5.52 -6.0 -5.04 - - - -5.42 - - -4.62 -2.38 -6.94 - -7.67 -7.6 -5.25 - -5.86 -6.11 -6.18 -6.04 -5.26 -7.35 0.39
Solyc07g041070.3.1 (Solyc07g041070.3)
1.29 -0.76 2.05 -0.23 -1.01 -1.1 0.38 -1.16 -0.28 -1.6 1.54 0.2 1.59 1.45 -1.63 -2.64 -1.02 -5.72 -4.42 -4.35 0.7 -2.96 -2.28 -2.02 -1.7 -4.11 -1.68 -1.58 -1.22 -2.75 -2.27 -2.36 -1.55 2.74
Solyc07g041230.3.1 (Solyc07g041230.3)
1.82 -7.83 3.07 -0.02 -0.12 -0.45 -2.23 -0.59 0.15 -0.72 -2.25 -2.06 -0.75 -0.6 -4.23 -3.68 -4.64 -3.25 -0.98 -4.51 -2.26 -0.74 -1.38 -1.48 -1.73 -3.68 0.43 0.1 -0.71 -0.15 -0.31 -0.51 -1.26 2.71
Solyc07g061920.3.1 (Solyc07g061920.3)
-0.65 -3.16 0.58 0.45 0.83 -0.23 -6.07 -0.33 -0.54 1.32 -1.16 -1.82 -3.52 -4.15 1.3 1.08 1.26 -3.1 -4.09 -2.26 -1.41 0.2 -0.67 -0.14 -0.14 -2.29 -0.27 -0.32 -0.81 0.83 0.38 1.29 -6.06 1.86
Solyc08g006730.1.1 (Solyc08g006730.1)
1.74 -5.27 4.55 0.26 -4.14 -3.57 -5.22 -4.85 -2.1 -3.18 -3.5 -4.33 -7.06 -5.7 -3.9 -4.62 -3.06 - - -7.09 -5.29 -8.04 -7.9 -5.59 -6.39 -6.07 -11.81 -8.21 -5.12 -7.52 -6.06 -4.8 -3.68 2.28
Solyc08g007420.3.1 (Solyc08g007420.3)
1.31 1.3 1.23 2.38 -0.46 -1.19 0.94 -1.9 0.28 -0.21 -1.36 -2.68 -2.87 -2.75 0.37 -0.12 -0.01 -5.01 -4.14 -1.56 -0.14 -0.9 -1.91 -1.46 -1.33 -1.31 -0.47 -0.7 -0.25 -0.51 -0.68 0.38 -2.98 1.92
Solyc08g079630.3.1 (Solyc08g079630.3)
1.24 0.44 1.59 0.88 -0.58 -1.42 0.97 -1.71 -0.0 -0.74 1.06 0.54 0.88 0.53 -0.4 -0.09 -0.65 - -10.42 -2.37 -1.86 -0.53 0.09 -0.49 -1.2 -2.49 -0.93 -1.32 -1.57 -0.79 -0.23 -0.99 -3.17 2.17
Solyc09g007420.3.1 (Solyc09g007420.3)
0.84 -5.61 4.12 1.66 -0.56 -1.08 - -0.19 -0.7 -2.46 -4.46 -6.7 - -9.99 -2.82 -5.62 -4.42 - - -8.09 -3.94 -2.44 -2.45 -2.84 -3.39 - -3.49 -4.08 -5.07 -2.17 -2.17 -2.73 -3.12 2.8
Solyc09g007640.3.1 (Solyc09g007640.3)
1.56 0.53 -0.75 -0.16 0.93 0.54 0.13 -0.53 -0.21 -0.25 0.39 0.08 0.36 0.05 0.45 -0.02 -0.08 -10.06 -8.77 -2.29 -1.12 -0.63 -0.28 -0.71 -1.24 -2.48 0.04 -0.56 -0.89 -0.59 -0.25 -0.37 -1.68 2.35
Solyc09g015350.3.1 (Solyc09g015350.3)
0.19 -5.08 4.55 1.08 0.19 -1.93 - -0.43 -2.09 -2.67 -2.9 - -5.51 -7.04 -2.97 -4.59 -4.52 - - - -7.66 -2.77 -3.45 -3.41 -4.18 - -3.68 -4.03 -5.38 -2.43 -2.36 -2.41 -3.48 1.64
Solyc09g082900.3.1 (Solyc09g082900.3)
0.54 -2.27 3.63 3.12 1.23 -1.67 - -4.04 -2.86 -1.83 - -7.25 - - - - - - - -6.58 - -6.71 - -8.67 - - -6.96 -8.1 - - -6.3 -4.69 -3.07 2.98
Solyc09g091950.1.1 (Solyc09g091950.1)
-0.18 -3.41 3.96 3.58 -4.07 -9.16 - - -7.59 - - -6.73 - - - - - - -10.71 - -8.15 -8.29 - -10.14 -8.24 -6.23 - -9.43 -9.39 - -10.23 -6.59 - 2.41
Solyc10g045100.2.1 (Solyc10g045100.2)
0.21 0.91 3.47 2.6 1.37 -3.09 0.76 -2.84 -3.4 -2.44 0.08 -0.22 -2.17 -3.63 -4.96 -4.5 -4.77 -9.06 -6.01 -7.42 -5.19 -1.73 -0.65 -1.2 -1.28 -7.71 -0.11 -1.85 -3.51 -1.81 -1.15 -3.81 -6.41 1.44
Solyc10g076730.1.1 (Solyc10g076730.1)
0.53 -8.13 3.32 0.44 1.83 -1.68 -1.71 -0.29 1.77 -2.99 -5.02 -5.5 -6.61 - -6.74 - - - - -9.57 -6.56 -1.12 -1.6 -2.33 -3.24 -4.71 -2.88 -2.62 -3.47 -0.77 -0.61 -1.94 -0.19 3.12
Solyc10g081390.1.1 (Solyc10g081390.1)
-0.06 -0.5 4.36 3.41 -5.29 -9.39 - - -2.98 - - - - - - - - - - - -6.47 -9.26 - -10.28 -8.74 - -9.11 -6.98 -6.25 - - -9.01 -3.89 -0.29
Solyc11g005760.2.1 (Solyc11g005760.2)
0.88 -3.84 3.14 0.96 -0.26 -1.99 -2.1 -1.44 0.76 -0.7 -2.57 -1.98 0.28 0.29 -2.06 -3.21 -2.39 -0.82 -1.38 -4.13 1.19 -1.74 -1.99 -1.72 -1.73 -2.49 0.18 0.13 0.01 -0.91 -0.99 -1.27 -4.25 2.2
Solyc11g066970.2.1 (Solyc11g066970.2)
-0.44 -1.19 3.3 2.48 1.44 -0.36 -3.03 -0.48 -0.53 -0.59 0.61 0.31 -1.09 -0.12 -3.05 -4.64 -4.33 -9.16 - -6.13 -2.6 -2.22 -1.42 -1.9 -2.29 -7.23 -1.18 -1.91 -2.09 -1.51 -1.71 -1.87 -5.0 2.06
Solyc12g014420.2.1 (Solyc12g014420.2)
1.94 0.61 2.42 0.6 -0.85 -1.71 -0.03 -0.23 1.27 -2.52 -2.01 0.04 -4.49 -2.25 -3.09 -4.51 -3.0 -7.78 -5.55 -3.63 -1.38 -1.27 -0.31 -1.23 -2.15 -3.41 0.73 -1.0 -1.88 -1.03 0.21 -2.56 0.59 2.69
Solyc12g038843.1.1 (Solyc12g038843.1)
1.28 - 3.86 3.55 -4.8 -3.33 - - - - -4.92 - - - - - - - - -2.98 -1.08 -3.18 - -3.87 - - - -5.49 -1.36 - - -5.01 - 2.0
Solyc12g062940.2.1 (Solyc12g062940.2)
1.38 -6.26 4.64 1.35 -5.34 -3.07 - - - -7.3 -8.3 -8.32 -4.92 -4.24 - -6.93 - -2.92 -3.98 - - -4.17 -7.22 -5.61 -4.94 -5.03 -2.91 -3.06 -2.11 -3.97 -3.81 -4.93 - 1.43
Solyc12g098100.2.1 (Solyc12g098100.2)
1.81 -0.46 3.92 2.36 -1.47 -2.27 1.11 -1.5 1.38 -1.46 -6.78 - -6.74 - -0.76 -1.85 -1.63 - - - - -4.26 -4.48 -5.0 - -5.89 - -7.35 -6.54 -5.99 -4.67 - -3.89 1.0

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.