Heatmap: Cluster_28 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots
Roots (Meristematic zone)
Roots (Differentiation zone)
Roots (Elongation zone)
Hypocotyl
Leaves
Meristem (Vegetative)
Apical Meristem
Floral Buds
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Style (1d before flowering)
Style (1d after flowering)
Style+pollen (1d after flowering)
Pollen (Germinated)
Pollen (Mature/Ungerminated)
Fruits (Breaker stage)
Fruits (Mature green)
Pericarp/Exocarp (4d Post Anthesis)
Pericarp (5d Post Anthesis)
Pericarp (7d Post Anthesis)
Pericarp (10d Post Anthesis)
Pericarp
Seeds (5d Post Anthesis)
Seeds (7d Post Anthesis)
Seeds (10d Post Anthesis)
Septum/Seed (4d Post Anthesis)
Septum (7d Post Anthesis)
Septum (10d Post Anthesis)
Seedling (Leaves)
Seedling (Roots)
Solyc01g009940.1.1 (Solyc01g009940.1)
- 4.02 0.37 - 2.95 -0.29 - - - - - - - - - - - - - - - -0.32 - - - - -0.38 0.32 1.1 - 0.93 0.07 - -
Solyc01g049918.1.1 (Solyc01g049918.1)
- - - 3.1 - -0.31 - - - - 2.18 1.82 3.62 - - - - - - - - - - - - - 2.12 - - - - - - -
Solyc01g057410.1.1 (Solyc01g057410.1)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc01g066040.2.1 (Solyc01g066040.2)
0.91 - - - -5.65 -0.3 -5.94 -1.04 -1.56 1.84 2.39 1.88 -0.77 -2.0 -1.39 -1.75 -1.09 - - 0.66 0.62 -2.77 -5.28 -1.11 0.1 -0.73 -4.1 -2.05 -0.01 -4.29 -0.77 2.16 0.01 1.64
Solyc01g066160.1.1 (Solyc01g066160.1)
2.16 - -0.12 -1.93 - -0.79 - -3.66 -0.76 2.98 1.69 1.93 -0.33 -1.81 -1.3 -0.62 -0.02 - - -1.73 0.92 - - -1.88 -0.66 - - -4.28 -1.29 -3.95 -1.78 1.73 -0.5 0.13
Solyc01g066190.1.1 (Solyc01g066190.1)
4.46 - -3.54 - - 0.7 -3.31 -3.9 - -2.99 -2.19 1.66 - - - - - - - -0.45 0.31 -3.15 -2.12 -3.41 - 1.48 -2.42 -6.26 -3.99 -4.1 -3.92 -1.44 -0.93 -2.89
Solyc01g097420.2.1 (Solyc01g097420.2)
1.34 -2.29 -3.54 -2.64 -2.98 -2.78 1.51 -2.5 1.34 0.7 -1.7 -2.28 2.62 2.78 -0.27 -0.45 -0.15 - - -2.08 -1.25 -2.21 -5.97 -3.21 -3.76 -3.93 -0.59 -0.4 -0.76 -0.93 -1.47 -1.42 -7.19 1.65
Solyc01g102910.3.1 (Solyc01g102910.3)
4.35 - - - - -5.16 - -8.81 0.8 -1.3 -10.26 -7.47 -9.41 - - - - - -9.99 -5.76 -7.81 - -8.71 -11.09 -10.86 -0.78 - - - -8.9 - - -6.56 3.44
Solyc01g108080.3.1 (Solyc01g108080.3)
- -1.7 - - -1.35 -0.07 1.51 0.28 - - -0.34 0.74 1.29 4.22 - -1.43 -1.44 - - -1.72 - - -0.58 -1.03 - - - -2.01 -1.61 -1.8 - - -0.33 -0.26
Solyc02g005300.1.1 (Solyc02g005300.1)
- - - - - - - - - - - - - 5.09 - - - - - - - - - - - - - - - - - - - -
Solyc02g068170.1.1 (Solyc02g068170.1)
4.6 - -6.67 - 1.39 1.01 - -3.53 -2.44 -0.6 - -3.01 -6.29 - -4.05 - - - - -5.84 - - - -8.42 - -4.54 - - - -7.34 -7.0 -6.64 0.42 1.34
Solyc02g069760.2.1 (Solyc02g069760.2)
1.61 - - - 1.95 -0.28 1.61 - -4.31 - - - - -6.88 3.05 2.48 2.55 - -6.67 -7.88 -2.63 -4.78 -5.42 -5.3 -4.15 - -1.43 -0.89 0.02 -2.7 -4.28 -2.88 -0.24 -
Solyc02g086480.1.1 (Solyc02g086480.1)
3.25 - -5.29 - -2.34 -0.75 -1.67 -0.63 0.55 -0.18 - - -4.5 - - -5.04 - - - -2.31 -1.04 -0.29 -4.38 -1.75 -0.98 - -1.62 -1.1 -0.03 -0.99 -1.08 2.03 -3.91 3.46
Solyc02g086700.3.1 (Solyc02g086700.3)
3.25 - - - -2.16 1.27 -6.72 -3.13 -2.07 -0.29 -3.76 -4.62 -4.83 - 1.42 0.81 1.02 - - -4.76 -0.35 - - -6.92 -3.56 1.04 - -4.78 -3.48 - - -0.71 -4.72 3.37
Solyc02g087820.1.1 (Solyc02g087820.1)
- - - 1.64 0.32 -0.74 - - - 3.97 - - - - 1.75 - - - - - 1.19 0.38 - -0.06 -0.24 - - 0.65 0.74 - 0.45 - - -
Solyc02g090520.2.1 (Solyc02g090520.2)
- - - 0.53 -0.46 -0.13 - - - - 2.91 0.99 2.43 3.77 - - - - - - - - - - - - - - - - - - - 1.28
Solyc02g094095.1.1 (Solyc02g094095.1)
1.67 - - 0.2 2.52 0.17 - 0.16 - 1.09 - 2.06 1.12 0.17 -0.38 2.75 - 0.93 -1.2 -1.86 - -0.56 - - - - - -0.99 -1.69 - - -1.01 - -
Solyc03g093930.3.1 (Solyc03g093930.3)
4.95 - -0.62 - -2.92 -0.54 - -2.53 - - - -4.67 - - - - - - - - - - - - -4.55 - - - -5.89 - - - - 0.45
Solyc03g111883.1.1 (Solyc03g111883.1)
3.66 - - - 0.27 - - - 0.64 0.87 - -0.16 -1.26 - - - - 0.1 0.87 - 2.34 - - -1.27 - - - - -0.01 - - - - 2.61
Solyc03g117450.2.1 (Solyc03g117450.2)
- 0.5 - -0.46 -1.16 -1.11 - - 1.22 - 0.67 - 0.61 3.22 - - - - - 1.22 - - -0.05 -0.92 -2.18 - 0.01 0.26 -0.92 -0.21 1.68 -1.17 - 2.29
Solyc04g006950.3.1 (Solyc04g006950.3)
2.98 - -4.7 - -1.87 2.31 - -1.43 -0.5 2.44 -4.63 - - - -4.03 -2.04 - - - - - -1.85 - -4.72 -4.69 - -6.23 -5.29 -6.2 -3.05 -1.91 -0.85 3.58 -0.48
Solyc04g024980.2.1 (Solyc04g024980.2)
- - - - - - - - - - - - - - - - - - - - 5.09 - - - - - - - - - - - - -
Solyc04g050967.1.1 (Solyc04g050967.1)
1.96 - - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - - - - -
Solyc04g054253.1.1 (Solyc04g054253.1)
- - - - -0.73 - -2.82 - 0.13 -0.07 -1.89 -1.25 2.11 3.48 - - - - - - - -1.04 - -3.52 - - 2.89 1.59 1.43 -1.17 -0.14 - - -
Solyc05g007530.1.1 (Solyc05g007530.1)
3.57 - 1.68 - - - - - - - -0.65 - - - - - - - - - - - - - - - - - - - - - - 4.19
Solyc05g016615.1.1 (Solyc05g016615.1)
4.96 - - - 1.56 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc05g048780.1.1 (Solyc05g048780.1)
- - - - -3.51 -5.93 -2.66 - 3.6 - - - - 3.51 - - - - - - - 0.02 - -0.11 -0.85 - 0.23 -0.85 -0.61 0.49 0.74 1.22 - -
Solyc06g005310.3.1 (Solyc06g005310.3)
3.49 - 0.68 -5.1 0.67 1.32 - -0.89 -4.06 0.67 -6.15 - - - - - - - - - -3.37 -2.23 -6.13 -4.12 -3.01 - -5.26 -2.15 -1.95 -1.18 -1.29 -0.28 -1.2 3.55
Solyc06g005880.3.1 (Solyc06g005880.3)
4.0 - - - - 0.25 - - 2.76 - -1.1 - -1.09 - - - - - - - - - - - - 0.04 - - - - - - - 3.0
Solyc06g006020.2.1 (Solyc06g006020.2)
4.2 - - - 1.17 1.7 -5.86 -2.83 - -1.3 - -5.13 - - - - - - - - - - - -6.56 -3.63 -0.4 - - -3.91 - - -3.79 - 3.08
Solyc06g006050.2.1 (Solyc06g006050.2)
3.82 - - - 2.15 2.2 - - - - - - - - - - - - - - - - - - - -0.02 - - - - - - - 3.3
Solyc06g006053.1.1 (Solyc06g006053.1)
3.81 - - - - 1.46 - - - - - - - - - - - - - - - - - - - - - - 1.35 - - 1.61 - 3.54
Solyc06g072860.2.1 (Solyc06g072860.2)
2.48 1.27 0.25 -0.98 - -0.08 -2.84 - 0.09 - - - - - -0.24 - - 1.9 0.69 - -0.97 - - 1.1 1.0 - -2.15 1.24 -0.93 -0.73 -0.77 -0.41 -2.48 2.61
Solyc06g083933.1.1 (Solyc06g083933.1)
4.03 - - - - - - - 1.14 - - - -1.35 - - - - - - - - -1.02 - - - - -0.85 -1.63 - -0.03 -1.34 - - 3.63
Solyc07g032745.1.1 (Solyc07g032745.1)
- - - - - - - - - - - - - - - - - - - - - - - 5.09 - - - - - - - - - -
Solyc07g043347.1.1 (Solyc07g043347.1)
- 1.94 - 1.98 - - - 2.0 1.75 - - 2.17 - 0.84 - - - - - - 2.93 - - -0.77 - - - 1.46 0.69 - - - - -
Solyc07g054960.2.1 (Solyc07g054960.2)
2.27 - 3.55 0.91 - - - - - - - - - - -2.36 - - - - - - -0.05 -1.18 -0.09 -0.57 - 1.94 -1.54 -0.74 -2.35 1.43 -0.71 - 2.04
Solyc07g065300.2.1 (Solyc07g065300.2)
4.79 - - - -1.81 0.25 - - - 0.66 - - - - - - - - - - - - - - - - - - -3.39 - - - - 1.65
Solyc08g044336.1.1 (Solyc08g044336.1)
- - - - - - - - - - - - - - - - - - - - 5.09 - - - - - - - - - - - - -
Solyc08g062270.2.1 (Solyc08g062270.2)
- - - - - -0.38 - - - - -0.3 - 3.04 4.37 1.79 - - - - - - - - - - - - - - - - - - -
Solyc08g078110.1.1 (Solyc08g078110.1)
0.53 1.6 0.48 -0.42 - -3.22 1.2 -0.73 0.67 0.9 - 0.1 - - -0.18 -0.02 - - - - - 1.64 1.02 0.58 -0.41 - -0.64 0.68 0.04 1.18 1.65 -1.95 - 0.72
Solyc08g079490.3.1 (Solyc08g079490.3)
0.59 0.04 -0.22 -0.4 0.52 0.87 0.2 0.69 0.11 0.19 0.48 0.62 0.63 0.5 0.13 0.18 0.01 -3.89 -3.56 -0.31 -0.67 -0.21 -0.29 -0.35 -0.58 -0.27 0.02 -0.16 -0.44 -0.1 -0.06 -0.51 -1.29 0.35
Solyc09g005134.1.1 (Solyc09g005134.1)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc09g008917.1.1 (Solyc09g008917.1)
3.61 -0.2 2.81 -0.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.74
Solyc09g014260.1.1 (Solyc09g014260.1)
- - 4.5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.5
Solyc09g014270.1.1 (Solyc09g014270.1)
- - - - - 1.77 - - - - - - - - - - - - - - - - 3.53 - - - - - - - - - - 4.25
Solyc09g015210.1.1 (Solyc09g015210.1)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc09g055425.1.1 (Solyc09g055425.1)
3.26 - - - - 3.37 - - - - - - - - - - - - 2.57 - - - - - - - - - 1.82 - - 2.2 - -
Solyc09g097810.3.1 (Solyc09g097810.3)
4.53 - - - -3.4 0.21 - - -3.3 -0.23 -4.06 - - -6.68 -4.39 -1.9 -2.22 - -7.78 -5.17 - -5.7 - -3.82 -3.37 - - -5.91 -4.21 -3.65 -3.5 -2.31 -2.65 2.87
Solyc10g007154.1.1 (Solyc10g007154.1)
2.23 - - - - 0.0 - - - - - - 3.54 4.06 - - - - - - - - - - - - - - - - - - - -
Solyc10g007156.1.1 (Solyc10g007156.1)
1.94 - - - -0.53 -3.35 - - - - - -0.03 4.14 - - - - - 0.91 - - - - - -1.63 - 1.32 0.35 0.74 - - -0.09 - 1.1
Solyc10g074945.1.1 (Solyc10g074945.1)
5.05 - - - - -0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc11g018660.2.1 (Solyc11g018660.2)
3.11 -2.8 2.59 2.1 0.14 -0.28 - -0.3 -0.13 -0.18 -0.17 -0.68 -2.7 -2.14 -1.96 -4.49 -2.58 - -5.16 -5.04 -2.37 -1.85 -2.54 -2.37 -3.08 -3.11 -3.28 -2.38 -2.92 -1.69 -1.13 -1.53 -3.69 2.39
Solyc11g019940.1.1 (Solyc11g019940.1)
1.12 - 3.32 - - -0.63 - -0.22 - 2.27 - - 2.36 -0.26 - - - - - - - - - - - - 1.68 -1.28 0.23 - - - - 2.25
Solyc11g042710.2.1 (Solyc11g042710.2)
3.97 - - - -3.31 1.44 - - -1.06 1.32 -0.08 -4.6 -4.41 -2.74 - - - - - -5.37 - -3.98 1.21 0.53 -1.67 -2.93 1.42 0.92 -0.92 -3.63 - -4.52 -4.48 0.86
Solyc11g045680.2.1 (Solyc11g045680.2)
2.43 - 2.73 3.29 -0.98 -2.64 - - -0.74 - - -1.95 - - 0.5 - 0.93 - - - -0.13 - - - - - - - - - - - - 2.68
Solyc11g045690.2.1 (Solyc11g045690.2)
2.27 - 3.35 2.71 - -1.5 -1.33 - - - - - - - - - - - - - - - - - - - - - - - - - - 3.55
Solyc11g065710.2.1 (Solyc11g065710.2)
3.16 - - 2.41 4.3 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc12g033010.1.1 (Solyc12g033010.1)
- - - - 0.16 1.1 - - 1.28 - - - - - - 1.97 - - - 0.97 2.91 - 0.78 0.84 - - 1.31 0.84 -0.14 - 0.3 1.77 0.68 -
Solyc12g036860.2.1 (Solyc12g036860.2)
0.85 0.39 - - 2.03 -2.13 0.82 - - 0.91 - -1.7 -0.52 4.2 -0.83 - -1.17 -1.53 -2.11 - - - - - - - -0.22 - 0.07 - - - - -
Solyc12g038730.1.1 (Solyc12g038730.1)
- - - - - -1.2 - - - - - - 1.16 4.82 - - - - - - - - - - - - - -0.09 - - 1.12 - - -
Solyc12g049447.1.1 (Solyc12g049447.1)
- - - - - -0.38 - - 1.26 - 1.74 1.52 2.13 0.03 - - - - - 0.35 0.06 - 1.51 0.42 0.39 1.14 1.6 0.13 0.8 - 0.46 -1.03 - 0.61
Solyc12g099190.1.1 (Solyc12g099190.1)
2.61 -3.61 2.07 0.24 -0.41 -0.82 - -2.49 -2.22 -1.21 -2.59 -1.96 -4.11 -2.88 -3.0 -2.63 -2.85 - - -0.69 2.05 -1.4 -2.47 -1.7 -1.09 -0.83 -0.62 0.31 1.39 -1.01 -1.25 0.06 -0.98 2.49

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.